Diff of the two buildlogs: -- --- b1/build.log 2025-03-05 19:29:34.097774523 +0000 +++ b2/build.log 2025-03-05 19:31:24.892762039 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Apr 7 13:49:09 -12 2026 -I: pbuilder-time-stamp: 1775612949 +I: Current time: Thu Mar 6 09:29:36 +14 2025 +I: pbuilder-time-stamp: 1741202976 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,51 +26,83 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/281659/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3199343/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 5 19:29 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3199343/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3199343/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f59048d13ce3466db4b0b58928701f67' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='281659' - PS1='# ' - PS2='> ' + INVOCATION_ID=c359da4fa7114e03aacb7be21a1e61fc + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3199343 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PtuBEia0/pbuilderrc_VITi --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PtuBEia0/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PtuBEia0/pbuilderrc_pQjt --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PtuBEia0/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/281659/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3199343/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -195,7 +227,7 @@ Get: 71 http://deb.debian.org/debian trixie/main amd64 libspoa-dev amd64 4.1.4-2+b1 [9808 B] Get: 72 http://deb.debian.org/debian trixie/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 73 http://deb.debian.org/debian trixie/main amd64 rampler amd64 2.1.1-1 [21.2 kB] -Fetched 42.9 MB in 1s (30.3 MB/s) +Fetched 42.9 MB in 0s (92.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) @@ -502,7 +534,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/3199343/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3199343/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -528,7 +564,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (1.3s) +-- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -555,16 +591,16 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -[ 20%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -[ 20%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp -[ 40%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp +[ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp -[ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +[ 30%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +[ 50%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 @@ -575,18 +611,18 @@ make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build -make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' +make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -[ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o -[ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o +[ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp +[ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 @@ -609,112 +645,112 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (1 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (0 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (2 ms) +[ OK ] RaconInitializeTest.WindowLengthError (0 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (0 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (5 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (34 ms) -[----------] 5 tests from RaconInitializeTest (44 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (1 ms) +[----------] 5 tests from RaconInitializeTest (6 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000596 s -[racon::Polisher::initialize] loaded sequences 0.035551 s -[racon::Polisher::initialize] loaded overlaps 0.000392 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.027190 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.038198 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.054593 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.066023 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.080686 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.093823 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.125824 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.141737 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.154517 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.166134 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.181844 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.195340 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.210063 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.217409 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.227688 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.235918 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.243503 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.256644 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.268036 s [racon::Polisher::initialize] aligning overlaps [====================] 0.275415 s -[racon::Polisher::initialize] transformed data into windows 0.001946 s -[racon::Polisher::polish] generating consensus [=> ] 0.017810 s [racon::Polisher::polish] generating consensus [==> ] 0.036559 s [racon::Polisher::polish] generating consensus [===> ] 0.055687 s [racon::Polisher::polish] generating consensus [====> ] 0.068382 s [racon::Polisher::polish] generating consensus [=====> ] 0.074534 s [racon::Polisher::polish] generating consensus [======> ] 0.084964 s [racon::Polisher::polish] generating consensus [=======> ] 0.094827 s [racon::Polisher::polish] generating consensus [========> ] 0.103615 s [racon::Polisher::polish] generating consensus [=========> ] 0.111588 s [racon::Polisher::polish] generating consensus [==========> ] 0.132388 s [racon::Polisher::polish] generating consensus [===========> ] 0.153865 s [racon::Polisher::polish] generating consensus [============> ] 0.183905 s [racon::Polisher::polish] generating consensus [=============> ] 0.220734 s [racon::Polisher::polish] generating consensus [==============> ] 0.258750 s [racon::Polisher::polish] generating consensus [===============> ] 0.290443 s [racon::Polisher::polish] generating consensus [================> ] 0.311289 s [racon::Polisher::polish] generating consensus [=================> ] 0.339568 s [racon::Polisher::polish] generating consensus [==================> ] 0.339595 s [racon::Polisher::polish] generating consensus [===================>] 0.355851 s [racon::Polisher::polish] generating consensus [====================] 0.395035 s -[racon::Polisher::] total = 0.723727 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (734 ms) +[racon::Polisher::initialize] loaded target sequences 0.000341 s +[racon::Polisher::initialize] loaded sequences 0.024799 s +[racon::Polisher::initialize] loaded overlaps 0.000188 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.017122 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.025209 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.034539 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.042011 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.051464 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.059867 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.080541 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.090694 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.098985 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.106227 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.116326 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.124945 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.134485 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.139169 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.145831 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.164141 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.169749 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.177475 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.188373 s [racon::Polisher::initialize] aligning overlaps [====================] 0.199411 s +[racon::Polisher::initialize] transformed data into windows 0.001509 s +[racon::Polisher::polish] generating consensus [=> ] 0.014803 s [racon::Polisher::polish] generating consensus [==> ] 0.028378 s [racon::Polisher::polish] generating consensus [===> ] 0.039647 s [racon::Polisher::polish] generating consensus [====> ] 0.048755 s [racon::Polisher::polish] generating consensus [=====> ] 0.055194 s [racon::Polisher::polish] generating consensus [======> ] 0.061610 s [racon::Polisher::polish] generating consensus [=======> ] 0.067493 s [racon::Polisher::polish] generating consensus [========> ] 0.074449 s [racon::Polisher::polish] generating consensus [=========> ] 0.083805 s [racon::Polisher::polish] generating consensus [==========> ] 0.093766 s [racon::Polisher::polish] generating consensus [===========> ] 0.110708 s [racon::Polisher::polish] generating consensus [============> ] 0.131631 s [racon::Polisher::polish] generating consensus [=============> ] 0.159998 s [racon::Polisher::polish] generating consensus [==============> ] 0.187440 s [racon::Polisher::polish] generating consensus [===============> ] 0.207142 s [racon::Polisher::polish] generating consensus [================> ] 0.222395 s [racon::Polisher::polish] generating consensus [=================> ] 0.239926 s [racon::Polisher::polish] generating consensus [==================> ] 0.252906 s [racon::Polisher::polish] generating consensus [===================>] 0.265568 s [racon::Polisher::polish] generating consensus [====================] 0.324330 s +[racon::Polisher::] total = 0.561493 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (567 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000422 s -[racon::Polisher::initialize] loaded sequences 0.015143 s -[racon::Polisher::initialize] loaded overlaps 0.000216 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.019372 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.035474 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.051088 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.068575 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.080003 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.082474 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.103976 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.116792 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.127278 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.136426 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.149331 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.160135 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.172041 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.177901 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.191631 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.199988 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.215724 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.231938 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.249370 s [racon::Polisher::initialize] aligning overlaps [====================] 0.252808 s -[racon::Polisher::initialize] transformed data into windows 0.000309 s -[racon::Polisher::polish] generating consensus [=> ] 0.018295 s [racon::Polisher::polish] generating consensus [==> ] 0.038636 s [racon::Polisher::polish] generating consensus [===> ] 0.055488 s [racon::Polisher::polish] generating consensus [====> ] 0.070693 s [racon::Polisher::polish] generating consensus [=====> ] 0.080557 s [racon::Polisher::polish] generating consensus [======> ] 0.090188 s [racon::Polisher::polish] generating consensus [=======> ] 0.102164 s [racon::Polisher::polish] generating consensus [========> ] 0.112371 s [racon::Polisher::polish] generating consensus [=========> ] 0.124079 s [racon::Polisher::polish] generating consensus [==========> ] 0.141465 s [racon::Polisher::polish] generating consensus [===========> ] 0.165972 s [racon::Polisher::polish] generating consensus [============> ] 0.193783 s [racon::Polisher::polish] generating consensus [=============> ] 0.233843 s [racon::Polisher::polish] generating consensus [==============> ] 0.266356 s [racon::Polisher::polish] generating consensus [===============> ] 0.296657 s [racon::Polisher::polish] generating consensus [================> ] 0.326381 s [racon::Polisher::polish] generating consensus [=================> ] 0.359981 s [racon::Polisher::polish] generating consensus [==================> ] 0.378225 s [racon::Polisher::polish] generating consensus [===================>] 0.405606 s [racon::Polisher::polish] generating consensus [====================] 0.517106 s -[racon::Polisher::] total = 0.796646 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (807 ms) +[racon::Polisher::initialize] loaded target sequences 0.000336 s +[racon::Polisher::initialize] loaded sequences 0.008825 s +[racon::Polisher::initialize] loaded overlaps 0.000163 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.014884 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.022846 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.033323 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.040722 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.050178 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.058677 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.079470 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.089701 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.098033 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.105378 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.115506 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.124220 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.133738 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.138426 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.144729 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.155259 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.160045 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.167592 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.180475 s [racon::Polisher::initialize] aligning overlaps [====================] 0.192322 s +[racon::Polisher::initialize] transformed data into windows 0.000260 s +[racon::Polisher::polish] generating consensus [=> ] 0.015701 s [racon::Polisher::polish] generating consensus [==> ] 0.033580 s [racon::Polisher::polish] generating consensus [===> ] 0.047977 s [racon::Polisher::polish] generating consensus [====> ] 0.060291 s [racon::Polisher::polish] generating consensus [=====> ] 0.069034 s [racon::Polisher::polish] generating consensus [======> ] 0.077307 s [racon::Polisher::polish] generating consensus [=======> ] 0.087324 s [racon::Polisher::polish] generating consensus [========> ] 0.096307 s [racon::Polisher::polish] generating consensus [=========> ] 0.106666 s [racon::Polisher::polish] generating consensus [==========> ] 0.123231 s [racon::Polisher::polish] generating consensus [===========> ] 0.144247 s [racon::Polisher::polish] generating consensus [============> ] 0.168935 s [racon::Polisher::polish] generating consensus [=============> ] 0.204323 s [racon::Polisher::polish] generating consensus [==============> ] 0.231827 s [racon::Polisher::polish] generating consensus [===============> ] 0.258356 s [racon::Polisher::polish] generating consensus [================> ] 0.284533 s [racon::Polisher::polish] generating consensus [=================> ] 0.309647 s [racon::Polisher::polish] generating consensus [==================> ] 0.324320 s [racon::Polisher::polish] generating consensus [===================>] 0.341308 s [racon::Polisher::polish] generating consensus [====================] 0.439033 s +[racon::Polisher::] total = 0.650793 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (657 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000416 s -[racon::Polisher::initialize] loaded sequences 0.031952 s -[racon::Polisher::initialize] loaded overlaps 0.016736 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.003094 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.003288 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003299 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003533 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.003558 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.003568 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003708 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003897 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.004010 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.004056 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.004161 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.004343 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.004474 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.004485 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.004625 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004750 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004919 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004998 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.005063 s [racon::Polisher::initialize] aligning overlaps [====================] 0.005124 s -[racon::Polisher::initialize] transformed data into windows 0.001970 s -[racon::Polisher::polish] generating consensus [=> ] 0.020780 s [racon::Polisher::polish] generating consensus [==> ] 0.036310 s [racon::Polisher::polish] generating consensus [===> ] 0.053936 s [racon::Polisher::polish] generating consensus [====> ] 0.068588 s [racon::Polisher::polish] generating consensus [=====> ] 0.075842 s [racon::Polisher::polish] generating consensus [======> ] 0.083230 s [racon::Polisher::polish] generating consensus [=======> ] 0.091464 s [racon::Polisher::polish] generating consensus [========> ] 0.099158 s [racon::Polisher::polish] generating consensus [=========> ] 0.109587 s [racon::Polisher::polish] generating consensus [==========> ] 0.121385 s [racon::Polisher::polish] generating consensus [===========> ] 0.143606 s [racon::Polisher::polish] generating consensus [============> ] 0.166839 s [racon::Polisher::polish] generating consensus [=============> ] 0.200662 s [racon::Polisher::polish] generating consensus [==============> ] 0.235236 s [racon::Polisher::polish] generating consensus [===============> ] 0.258508 s [racon::Polisher::polish] generating consensus [================> ] 0.283477 s [racon::Polisher::polish] generating consensus [=================> ] 0.307907 s [racon::Polisher::polish] generating consensus [==================> ] 0.325329 s [racon::Polisher::polish] generating consensus [===================>] 0.341833 s [racon::Polisher::polish] generating consensus [====================] 0.383785 s -[racon::Polisher::] total = 0.452593 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (461 ms) +[racon::Polisher::initialize] loaded target sequences 0.000377 s +[racon::Polisher::initialize] loaded sequences 0.025492 s +[racon::Polisher::initialize] loaded overlaps 0.013474 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.002518 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002525 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002528 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002571 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002663 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002754 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002795 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002904 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.002998 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003076 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003151 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003236 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003378 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003395 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003466 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003557 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003637 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003723 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003729 s [racon::Polisher::initialize] aligning overlaps [====================] 0.003778 s +[racon::Polisher::initialize] transformed data into windows 0.001638 s +[racon::Polisher::polish] generating consensus [=> ] 0.015442 s [racon::Polisher::polish] generating consensus [==> ] 0.029291 s [racon::Polisher::polish] generating consensus [===> ] 0.040963 s [racon::Polisher::polish] generating consensus [====> ] 0.050538 s [racon::Polisher::polish] generating consensus [=====> ] 0.057262 s [racon::Polisher::polish] generating consensus [======> ] 0.063435 s [racon::Polisher::polish] generating consensus [=======> ] 0.069844 s [racon::Polisher::polish] generating consensus [========> ] 0.077161 s [racon::Polisher::polish] generating consensus [=========> ] 0.085440 s [racon::Polisher::polish] generating consensus [==========> ] 0.095089 s [racon::Polisher::polish] generating consensus [===========> ] 0.111187 s [racon::Polisher::polish] generating consensus [============> ] 0.133018 s [racon::Polisher::polish] generating consensus [=============> ] 0.159778 s [racon::Polisher::polish] generating consensus [==============> ] 0.186714 s [racon::Polisher::polish] generating consensus [===============> ] 0.208707 s [racon::Polisher::polish] generating consensus [================> ] 0.224445 s [racon::Polisher::polish] generating consensus [=================> ] 0.244736 s [racon::Polisher::polish] generating consensus [==================> ] 0.256443 s [racon::Polisher::polish] generating consensus [===================>] 0.267477 s [racon::Polisher::polish] generating consensus [====================] 0.323856 s +[racon::Polisher::] total = 0.380577 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (386 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000488 s -[racon::Polisher::initialize] loaded sequences 0.013535 s -[racon::Polisher::initialize] loaded overlaps 0.016522 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.002430 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002491 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002616 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002659 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002728 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002826 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002955 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003022 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003113 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003213 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003333 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003432 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003530 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003580 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003683 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003739 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003778 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003848 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003924 s [racon::Polisher::initialize] aligning overlaps [====================] 0.003970 s -[racon::Polisher::initialize] transformed data into windows 0.000279 s -[racon::Polisher::polish] generating consensus [=> ] 0.017232 s [racon::Polisher::polish] generating consensus [==> ] 0.036437 s [racon::Polisher::polish] generating consensus [===> ] 0.052046 s [racon::Polisher::polish] generating consensus [====> ] 0.066278 s [racon::Polisher::polish] generating consensus [=====> ] 0.074830 s [racon::Polisher::polish] generating consensus [======> ] 0.082394 s [racon::Polisher::polish] generating consensus [=======> ] 0.091912 s [racon::Polisher::polish] generating consensus [========> ] 0.103079 s [racon::Polisher::polish] generating consensus [=========> ] 0.114354 s [racon::Polisher::polish] generating consensus [==========> ] 0.132113 s [racon::Polisher::polish] generating consensus [===========> ] 0.153847 s [racon::Polisher::polish] generating consensus [============> ] 0.180083 s [racon::Polisher::polish] generating consensus [=============> ] 0.221027 s [racon::Polisher::polish] generating consensus [==============> ] 0.252289 s [racon::Polisher::polish] generating consensus [===============> ] 0.284425 s [racon::Polisher::polish] generating consensus [================> ] 0.312852 s [racon::Polisher::polish] generating consensus [=================> ] 0.342112 s [racon::Polisher::polish] generating consensus [==================> ] 0.356859 s [racon::Polisher::polish] generating consensus [===================>] 0.373608 s [racon::Polisher::polish] generating consensus [====================] 0.472314 s -[racon::Polisher::] total = 0.515904 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (518 ms) +[racon::Polisher::initialize] loaded target sequences 0.000309 s +[racon::Polisher::initialize] loaded sequences 0.010175 s +[racon::Polisher::initialize] loaded overlaps 0.014080 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.001908 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.001916 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.001975 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002025 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002093 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002169 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002282 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002336 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.002409 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.002495 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.002595 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.002679 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.002756 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.002798 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.002906 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003035 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003079 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003144 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003204 s [racon::Polisher::initialize] aligning overlaps [====================] 0.003239 s +[racon::Polisher::initialize] transformed data into windows 0.000470 s +[racon::Polisher::polish] generating consensus [=> ] 0.015779 s [racon::Polisher::polish] generating consensus [==> ] 0.032087 s [racon::Polisher::polish] generating consensus [===> ] 0.046447 s [racon::Polisher::polish] generating consensus [====> ] 0.059491 s [racon::Polisher::polish] generating consensus [=====> ] 0.067194 s [racon::Polisher::polish] generating consensus [======> ] 0.073144 s [racon::Polisher::polish] generating consensus [=======> ] 0.081817 s [racon::Polisher::polish] generating consensus [========> ] 0.091163 s [racon::Polisher::polish] generating consensus [=========> ] 0.101598 s [racon::Polisher::polish] generating consensus [==========> ] 0.115970 s [racon::Polisher::polish] generating consensus [===========> ] 0.135522 s [racon::Polisher::polish] generating consensus [============> ] 0.159618 s [racon::Polisher::polish] generating consensus [=============> ] 0.192659 s [racon::Polisher::polish] generating consensus [==============> ] 0.222781 s [racon::Polisher::polish] generating consensus [===============> ] 0.253894 s [racon::Polisher::polish] generating consensus [================> ] 0.278111 s [racon::Polisher::polish] generating consensus [=================> ] 0.302842 s [racon::Polisher::polish] generating consensus [==================> ] 0.315578 s [racon::Polisher::polish] generating consensus [===================>] 0.330049 s [racon::Polisher::polish] generating consensus [====================] 0.412331 s +[racon::Polisher::] total = 0.447066 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (450 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.000522 s -[racon::Polisher::initialize] loaded sequences 0.032595 s -[racon::Polisher::initialize] loaded overlaps 0.000216 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.019198 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.028863 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.042009 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.051297 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.063148 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.073655 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.099439 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.112155 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.122479 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.131715 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.144508 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.155555 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.167639 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.173605 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.181599 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.196958 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.202956 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.212624 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.226055 s [racon::Polisher::initialize] aligning overlaps [====================] 0.240241 s -[racon::Polisher::initialize] transformed data into windows 0.001723 s -[racon::Polisher::polish] generating consensus [=> ] 0.058380 s [racon::Polisher::polish] generating consensus [==> ] 0.058601 s [racon::Polisher::polish] generating consensus [===> ] 0.111288 s [racon::Polisher::polish] generating consensus [====> ] 0.111337 s [racon::Polisher::polish] generating consensus [=====> ] 0.138485 s [racon::Polisher::polish] generating consensus [======> ] 0.138511 s [racon::Polisher::polish] generating consensus [=======> ] 0.161121 s [racon::Polisher::polish] generating consensus [========> ] 0.161159 s [racon::Polisher::polish] generating consensus [=========> ] 0.196197 s [racon::Polisher::polish] generating consensus [==========> ] 0.197874 s [racon::Polisher::polish] generating consensus [===========> ] 0.261829 s [racon::Polisher::polish] generating consensus [============> ] 0.273842 s [racon::Polisher::polish] generating consensus [=============> ] 0.386906 s [racon::Polisher::polish] generating consensus [==============> ] 0.386938 s [racon::Polisher::polish] generating consensus [===============> ] 0.459139 s [racon::Polisher::polish] generating consensus [================> ] 0.459189 s [racon::Polisher::polish] generating consensus [=================> ] 0.528663 s [racon::Polisher::polish] generating consensus [==================> ] 0.528691 s [racon::Polisher::polish] generating consensus [===================>] 0.591982 s [racon::Polisher::polish] generating consensus [====================] 0.719316 s -[racon::Polisher::] total = 1.010955 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1028 ms) +[racon::Polisher::initialize] loaded target sequences 0.000301 s +[racon::Polisher::initialize] loaded sequences 0.023772 s +[racon::Polisher::initialize] loaded overlaps 0.000160 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.015560 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.023630 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.034565 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.041935 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.051458 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.059815 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.080784 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.091045 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.099453 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.107070 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.117135 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.125743 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.135220 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.139885 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.146116 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.163720 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.169964 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.178264 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.191219 s [racon::Polisher::initialize] aligning overlaps [====================] 0.199081 s +[racon::Polisher::initialize] transformed data into windows 0.001460 s +[racon::Polisher::polish] generating consensus [=> ] 0.054312 s [racon::Polisher::polish] generating consensus [==> ] 0.054441 s [racon::Polisher::polish] generating consensus [===> ] 0.100333 s [racon::Polisher::polish] generating consensus [====> ] 0.100395 s [racon::Polisher::polish] generating consensus [=====> ] 0.123397 s [racon::Polisher::polish] generating consensus [======> ] 0.123416 s [racon::Polisher::polish] generating consensus [=======> ] 0.142864 s [racon::Polisher::polish] generating consensus [========> ] 0.142894 s [racon::Polisher::polish] generating consensus [=========> ] 0.175355 s [racon::Polisher::polish] generating consensus [==========> ] 0.175376 s [racon::Polisher::polish] generating consensus [===========> ] 0.234659 s [racon::Polisher::polish] generating consensus [============> ] 0.235952 s [racon::Polisher::polish] generating consensus [=============> ] 0.348367 s [racon::Polisher::polish] generating consensus [==============> ] 0.348387 s [racon::Polisher::polish] generating consensus [===============> ] 0.412584 s [racon::Polisher::polish] generating consensus [================> ] 0.412633 s [racon::Polisher::polish] generating consensus [=================> ] 0.469584 s [racon::Polisher::polish] generating consensus [==================> ] 0.469603 s [racon::Polisher::polish] generating consensus [===================>] 0.517561 s [racon::Polisher::polish] generating consensus [====================] 0.595977 s +[racon::Polisher::] total = 0.830611 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (840 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.000628 s -[racon::Polisher::initialize] loaded sequences 0.043287 s -[racon::Polisher::initialize] loaded overlaps 0.000285 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.019837 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.031587 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.045125 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.060234 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.070305 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.073130 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.094297 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.106088 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.115594 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.127674 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.137151 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.158149 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.183072 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.187908 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.210081 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.220482 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.232588 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.240303 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.254509 s [racon::Polisher::initialize] aligning overlaps [====================] 0.257389 s -[racon::Polisher::initialize] transformed data into windows 0.002319 s -[racon::Polisher::polish] generating consensus [=> ] 0.022842 s [racon::Polisher::polish] generating consensus [==> ] 0.041744 s [racon::Polisher::polish] generating consensus [===> ] 0.055920 s [racon::Polisher::polish] generating consensus [====> ] 0.067763 s [racon::Polisher::polish] generating consensus [=====> ] 0.074583 s [racon::Polisher::polish] generating consensus [======> ] 0.082780 s [racon::Polisher::polish] generating consensus [=======> ] 0.091913 s [racon::Polisher::polish] generating consensus [========> ] 0.100785 s [racon::Polisher::polish] generating consensus [=========> ] 0.114226 s [racon::Polisher::polish] generating consensus [==========> ] 0.130729 s [racon::Polisher::polish] generating consensus [===========> ] 0.153454 s [racon::Polisher::polish] generating consensus [============> ] 0.177034 s [racon::Polisher::polish] generating consensus [=============> ] 0.212319 s [racon::Polisher::polish] generating consensus [==============> ] 0.247398 s [racon::Polisher::polish] generating consensus [===============> ] 0.277598 s [racon::Polisher::polish] generating consensus [================> ] 0.298551 s [racon::Polisher::polish] generating consensus [=================> ] 0.326241 s [racon::Polisher::polish] generating consensus [==================> ] 0.342553 s [racon::Polisher::polish] generating consensus [===================>] 0.358573 s [racon::Polisher::polish] generating consensus [====================] 0.406941 s -[racon::Polisher::] total = 0.723943 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (726 ms) +[racon::Polisher::initialize] loaded target sequences 0.000305 s +[racon::Polisher::initialize] loaded sequences 0.024232 s +[racon::Polisher::initialize] loaded overlaps 0.000158 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.015376 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.023117 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.033381 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.040641 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.049987 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.058360 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.078746 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.088798 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.096942 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.104148 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.114112 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.122674 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.132080 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.136719 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.142864 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.157392 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.162228 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.169925 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.180713 s [racon::Polisher::initialize] aligning overlaps [====================] 0.194802 s +[racon::Polisher::initialize] transformed data into windows 0.001505 s +[racon::Polisher::polish] generating consensus [=> ] 0.013982 s [racon::Polisher::polish] generating consensus [==> ] 0.026962 s [racon::Polisher::polish] generating consensus [===> ] 0.038273 s [racon::Polisher::polish] generating consensus [====> ] 0.047108 s [racon::Polisher::polish] generating consensus [=====> ] 0.052685 s [racon::Polisher::polish] generating consensus [======> ] 0.058801 s [racon::Polisher::polish] generating consensus [=======> ] 0.064497 s [racon::Polisher::polish] generating consensus [========> ] 0.071194 s [racon::Polisher::polish] generating consensus [=========> ] 0.080019 s [racon::Polisher::polish] generating consensus [==========> ] 0.090082 s [racon::Polisher::polish] generating consensus [===========> ] 0.105527 s [racon::Polisher::polish] generating consensus [============> ] 0.125661 s [racon::Polisher::polish] generating consensus [=============> ] 0.151823 s [racon::Polisher::polish] generating consensus [==============> ] 0.177715 s [racon::Polisher::polish] generating consensus [===============> ] 0.196412 s [racon::Polisher::polish] generating consensus [================> ] 0.210759 s [racon::Polisher::polish] generating consensus [=================> ] 0.229249 s [racon::Polisher::polish] generating consensus [==================> ] 0.240319 s [racon::Polisher::polish] generating consensus [===================>] 0.251398 s [racon::Polisher::polish] generating consensus [====================] 0.311031 s +[racon::Polisher::] total = 0.540249 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (541 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.040069 s -[racon::Polisher::initialize] loaded sequences 0.040015 s -[racon::Polisher::initialize] loaded overlaps 0.008373 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.023287 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.037360 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.048136 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.053961 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.065187 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.075983 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.094336 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.104678 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.120857 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.133766 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.148101 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.169790 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.184898 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.202522 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.214068 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.232719 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.244545 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.254114 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.262364 s [racon::Polisher::initialize] aligning overlaps [====================] 0.283369 s -[racon::Polisher::initialize] transformed data into windows 0.002699 s -[racon::Polisher::polish] generating consensus [=> ] 0.016008 s [racon::Polisher::polish] generating consensus [==> ] 0.031196 s [racon::Polisher::polish] generating consensus [===> ] 0.047153 s [racon::Polisher::polish] generating consensus [====> ] 0.047336 s [racon::Polisher::polish] generating consensus [=====> ] 0.057210 s [racon::Polisher::polish] generating consensus [======> ] 0.063291 s [racon::Polisher::polish] generating consensus [=======> ] 0.072658 s [racon::Polisher::polish] generating consensus [========> ] 0.074890 s [racon::Polisher::polish] generating consensus [=========> ] 0.093917 s [racon::Polisher::polish] generating consensus [==========> ] 0.102795 s [racon::Polisher::polish] generating consensus [===========> ] 0.110842 s [racon::Polisher::polish] generating consensus [============> ] 0.113942 s [racon::Polisher::polish] generating consensus [=============> ] 0.122825 s [racon::Polisher::polish] generating consensus [==============> ] 0.123107 s [racon::Polisher::polish] generating consensus [===============> ] 0.143795 s [racon::Polisher::polish] generating consensus [================> ] 0.144288 s [racon::Polisher::polish] generating consensus [=================> ] 0.184387 s [racon::Polisher::polish] generating consensus [==================> ] 0.199472 s [racon::Polisher::polish] generating consensus [===================>] 0.211170 s [racon::Polisher::polish] generating consensus [====================] 0.212183 s -[racon::Polisher::] total = 0.587098 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (589 ms) +[racon::Polisher::initialize] loaded target sequences 0.023647 s +[racon::Polisher::initialize] loaded sequences 0.023646 s +[racon::Polisher::initialize] loaded overlaps 0.004973 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.017380 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.030000 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.034969 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.043226 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.051647 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.060158 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.074744 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.082854 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.095478 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.106194 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.117342 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.134596 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.146612 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.160749 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.169906 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.184791 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.193853 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.199004 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.210160 s [racon::Polisher::initialize] aligning overlaps [====================] 0.218630 s +[racon::Polisher::initialize] transformed data into windows 0.002153 s +[racon::Polisher::polish] generating consensus [=> ] 0.013280 s [racon::Polisher::polish] generating consensus [==> ] 0.026392 s [racon::Polisher::polish] generating consensus [===> ] 0.040190 s [racon::Polisher::polish] generating consensus [====> ] 0.040522 s [racon::Polisher::polish] generating consensus [=====> ] 0.051053 s [racon::Polisher::polish] generating consensus [======> ] 0.057633 s [racon::Polisher::polish] generating consensus [=======> ] 0.067925 s [racon::Polisher::polish] generating consensus [========> ] 0.068250 s [racon::Polisher::polish] generating consensus [=========> ] 0.088031 s [racon::Polisher::polish] generating consensus [==========> ] 0.095379 s [racon::Polisher::polish] generating consensus [===========> ] 0.101905 s [racon::Polisher::polish] generating consensus [============> ] 0.103001 s [racon::Polisher::polish] generating consensus [=============> ] 0.110650 s [racon::Polisher::polish] generating consensus [==============> ] 0.110946 s [racon::Polisher::polish] generating consensus [===============> ] 0.128336 s [racon::Polisher::polish] generating consensus [================> ] 0.128589 s [racon::Polisher::polish] generating consensus [=================> ] 0.161637 s [racon::Polisher::polish] generating consensus [==================> ] 0.172426 s [racon::Polisher::polish] generating consensus [===================>] 0.179242 s [racon::Polisher::polish] generating consensus [====================] 0.181005 s +[racon::Polisher::] total = 0.454393 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (455 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.041120 s -[racon::Polisher::initialize] loaded sequences 0.041110 s -[racon::Polisher::initialize] loaded overlaps 0.008667 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.362904 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.610224 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.818974 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.110088 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.347562 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.560935 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.789201 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.018855 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.228666 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.440966 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.616487 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.863845 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.110043 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.316212 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.554295 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.767150 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.992088 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.223317 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.377642 s [racon::Polisher::initialize] aligning overlaps [====================] 4.479132 s -[racon::Polisher::initialize] transformed data into windows 0.048396 s -[racon::Polisher::polish] generating consensus [=> ] 0.702070 s [racon::Polisher::polish] generating consensus [==> ] 1.359832 s [racon::Polisher::polish] generating consensus [===> ] 1.935512 s [racon::Polisher::polish] generating consensus [====> ] 2.267289 s [racon::Polisher::polish] generating consensus [=====> ] 2.630487 s [racon::Polisher::polish] generating consensus [======> ] 3.056893 s [racon::Polisher::polish] generating consensus [=======> ] 3.480682 s [racon::Polisher::polish] generating consensus [========> ] 3.789591 s [racon::Polisher::polish] generating consensus [=========> ] 4.183216 s [racon::Polisher::polish] generating consensus [==========> ] 4.742820 s [racon::Polisher::polish] generating consensus [===========> ] 5.258968 s [racon::Polisher::polish] generating consensus [============> ] 5.815487 s [racon::Polisher::polish] generating consensus [=============> ] 6.277706 s [racon::Polisher::polish] generating consensus [==============> ] 6.805930 s [racon::Polisher::polish] generating consensus [===============> ] 7.486110 s [racon::Polisher::polish] generating consensus [================> ] 7.857365 s [racon::Polisher::polish] generating consensus [=================> ] 8.189991 s [racon::Polisher::polish] generating consensus [==================> ] 8.327386 s [racon::Polisher::polish] generating consensus [===================>] 8.436436 s [racon::Polisher::polish] generating consensus [====================] 8.539865 s -[racon::Polisher::] total = 13.160810 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (13163 ms) +[racon::Polisher::initialize] loaded target sequences 0.023808 s +[racon::Polisher::initialize] loaded sequences 0.023527 s +[racon::Polisher::initialize] loaded overlaps 0.004912 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.244788 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.408208 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.558651 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.762162 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.945897 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.073251 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.256429 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.482440 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.701061 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.910645 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.070212 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.298817 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.529175 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.716953 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.982440 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.224493 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.445381 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.689100 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.929483 s [racon::Polisher::initialize] aligning overlaps [====================] 4.141082 s +[racon::Polisher::initialize] transformed data into windows 0.039499 s +[racon::Polisher::polish] generating consensus [=> ] 0.561308 s [racon::Polisher::polish] generating consensus [==> ] 0.964860 s [racon::Polisher::polish] generating consensus [===> ] 1.408265 s [racon::Polisher::polish] generating consensus [====> ] 1.772484 s [racon::Polisher::polish] generating consensus [=====> ] 2.172426 s [racon::Polisher::polish] generating consensus [======> ] 2.641217 s [racon::Polisher::polish] generating consensus [=======> ] 3.121269 s [racon::Polisher::polish] generating consensus [========> ] 3.472995 s [racon::Polisher::polish] generating consensus [=========> ] 3.908834 s [racon::Polisher::polish] generating consensus [==========> ] 4.414989 s [racon::Polisher::polish] generating consensus [===========> ] 4.838501 s [racon::Polisher::polish] generating consensus [============> ] 5.297833 s [racon::Polisher::polish] generating consensus [=============> ] 5.698261 s [racon::Polisher::polish] generating consensus [==============> ] 6.129360 s [racon::Polisher::polish] generating consensus [===============> ] 6.598414 s [racon::Polisher::polish] generating consensus [================> ] 6.854423 s [racon::Polisher::polish] generating consensus [=================> ] 7.387079 s [racon::Polisher::polish] generating consensus [==================> ] 7.872969 s [racon::Polisher::polish] generating consensus [===================>] 8.339933 s [racon::Polisher::polish] generating consensus [====================] 8.610311 s +[racon::Polisher::] total = 12.845695 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (12847 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.013796 s -[racon::Polisher::initialize] loaded sequences 0.014410 s -[racon::Polisher::initialize] loaded overlaps 0.006622 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.306296 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.504562 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.730367 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.069171 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.359564 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.560555 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.832699 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.087595 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.291158 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.496733 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.651489 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.874225 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.168104 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.407903 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.659040 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.890916 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.023102 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.148936 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.275502 s [racon::Polisher::initialize] aligning overlaps [====================] 4.377974 s -[racon::Polisher::initialize] transformed data into windows 0.009750 s -[racon::Polisher::polish] generating consensus [=> ] 0.731951 s [racon::Polisher::polish] generating consensus [==> ] 1.356705 s [racon::Polisher::polish] generating consensus [===> ] 2.043510 s [racon::Polisher::polish] generating consensus [====> ] 2.575191 s [racon::Polisher::polish] generating consensus [=====> ] 3.190483 s [racon::Polisher::polish] generating consensus [======> ] 3.858832 s [racon::Polisher::polish] generating consensus [=======> ] 4.486636 s [racon::Polisher::polish] generating consensus [========> ] 4.914058 s [racon::Polisher::polish] generating consensus [=========> ] 5.443103 s [racon::Polisher::polish] generating consensus [==========> ] 6.095487 s [racon::Polisher::polish] generating consensus [===========> ] 6.669008 s [racon::Polisher::polish] generating consensus [============> ] 7.224198 s [racon::Polisher::polish] generating consensus [=============> ] 7.745290 s [racon::Polisher::polish] generating consensus [==============> ] 8.300512 s [racon::Polisher::polish] generating consensus [===============> ] 8.822410 s [racon::Polisher::polish] generating consensus [================> ] 9.127746 s [racon::Polisher::polish] generating consensus [=================> ] 9.803577 s [racon::Polisher::polish] generating consensus [==================> ] 10.422754 s [racon::Polisher::polish] generating consensus [===================>] 11.089545 s [racon::Polisher::polish] generating consensus [====================] 11.254191 s -[racon::Polisher::] total = 15.679568 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (15681 ms) +[racon::Polisher::initialize] loaded target sequences 0.008979 s +[racon::Polisher::initialize] loaded sequences 0.009025 s +[racon::Polisher::initialize] loaded overlaps 0.004948 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.244389 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.405641 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.552522 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.768100 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.954195 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.082825 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.259011 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.487411 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.697474 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.908035 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.068530 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.298892 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.531589 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.720971 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.985818 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.225698 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.438708 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.668032 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.921334 s [racon::Polisher::initialize] aligning overlaps [====================] 4.131794 s +[racon::Polisher::initialize] transformed data into windows 0.006674 s +[racon::Polisher::polish] generating consensus [=> ] 0.756236 s [racon::Polisher::polish] generating consensus [==> ] 1.325288 s [racon::Polisher::polish] generating consensus [===> ] 1.901323 s [racon::Polisher::polish] generating consensus [====> ] 2.336507 s [racon::Polisher::polish] generating consensus [=====> ] 2.865682 s [racon::Polisher::polish] generating consensus [======> ] 3.454232 s [racon::Polisher::polish] generating consensus [=======> ] 4.082901 s [racon::Polisher::polish] generating consensus [========> ] 4.538397 s [racon::Polisher::polish] generating consensus [=========> ] 5.132137 s [racon::Polisher::polish] generating consensus [==========> ] 5.822668 s [racon::Polisher::polish] generating consensus [===========> ] 6.394239 s [racon::Polisher::polish] generating consensus [============> ] 7.025930 s [racon::Polisher::polish] generating consensus [=============> ] 7.624266 s [racon::Polisher::polish] generating consensus [==============> ] 8.214223 s [racon::Polisher::polish] generating consensus [===============> ] 8.820791 s [racon::Polisher::polish] generating consensus [================> ] 9.146031 s [racon::Polisher::polish] generating consensus [=================> ] 9.918461 s [racon::Polisher::polish] generating consensus [==================> ] 10.627461 s [racon::Polisher::polish] generating consensus [===================>] 11.274043 s [racon::Polisher::polish] generating consensus [====================] 11.703903 s +[racon::Polisher::] total = 15.866342 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (15868 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.033903 s -[racon::Polisher::initialize] loaded sequences 0.034038 s -[racon::Polisher::initialize] loaded overlaps 0.007343 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.307365 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.530139 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.726780 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.005569 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.265824 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.434811 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.665600 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.945599 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.158548 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.364168 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.517876 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.823579 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.125919 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.349873 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.586188 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.797434 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.035472 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.241487 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.462648 s [racon::Polisher::initialize] aligning overlaps [====================] 4.519117 s -[racon::Polisher::initialize] transformed data into windows 0.060832 s -[racon::Polisher::polish] generating consensus [=> ] 0.660785 s [racon::Polisher::polish] generating consensus [==> ] 1.187121 s [racon::Polisher::polish] generating consensus [===> ] 1.702360 s [racon::Polisher::polish] generating consensus [====> ] 2.070287 s [racon::Polisher::polish] generating consensus [=====> ] 2.446902 s [racon::Polisher::polish] generating consensus [======> ] 2.981742 s [racon::Polisher::polish] generating consensus [=======> ] 3.524339 s [racon::Polisher::polish] generating consensus [========> ] 3.901942 s [racon::Polisher::polish] generating consensus [=========> ] 4.352810 s [racon::Polisher::polish] generating consensus [==========> ] 4.897469 s [racon::Polisher::polish] generating consensus [===========> ] 5.358371 s [racon::Polisher::polish] generating consensus [============> ] 5.847442 s [racon::Polisher::polish] generating consensus [=============> ] 6.270575 s [racon::Polisher::polish] generating consensus [==============> ] 6.687401 s [racon::Polisher::polish] generating consensus [===============> ] 7.112914 s [racon::Polisher::polish] generating consensus [================> ] 7.358402 s [racon::Polisher::polish] generating consensus [=================> ] 7.823041 s [racon::Polisher::polish] generating consensus [==================> ] 8.195147 s [racon::Polisher::polish] generating consensus [===================>] 8.391795 s [racon::Polisher::polish] generating consensus [====================] 8.573942 s -[racon::Polisher::] total = 13.231840 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (13235 ms) -[----------] 10 tests from RaconPolishingTest (46946 ms total) +[racon::Polisher::initialize] loaded target sequences 0.024471 s +[racon::Polisher::initialize] loaded sequences 0.023775 s +[racon::Polisher::initialize] loaded overlaps 0.004508 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.260111 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.428479 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.575669 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.781412 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.963268 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.090843 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.265324 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.491711 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.705657 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.906859 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.065438 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.298073 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.558198 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.775738 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.039059 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.279975 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.481770 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.738144 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.999638 s [racon::Polisher::initialize] aligning overlaps [====================] 4.141407 s +[racon::Polisher::initialize] transformed data into windows 0.039032 s +[racon::Polisher::polish] generating consensus [=> ] 0.609968 s [racon::Polisher::polish] generating consensus [==> ] 1.051825 s [racon::Polisher::polish] generating consensus [===> ] 1.496842 s [racon::Polisher::polish] generating consensus [====> ] 1.875220 s [racon::Polisher::polish] generating consensus [=====> ] 2.323208 s [racon::Polisher::polish] generating consensus [======> ] 2.808392 s [racon::Polisher::polish] generating consensus [=======> ] 3.278500 s [racon::Polisher::polish] generating consensus [========> ] 3.655420 s [racon::Polisher::polish] generating consensus [=========> ] 4.096473 s [racon::Polisher::polish] generating consensus [==========> ] 4.659416 s [racon::Polisher::polish] generating consensus [===========> ] 5.125544 s [racon::Polisher::polish] generating consensus [============> ] 5.615210 s [racon::Polisher::polish] generating consensus [=============> ] 6.080522 s [racon::Polisher::polish] generating consensus [==============> ] 6.584534 s [racon::Polisher::polish] generating consensus [===============> ] 7.216360 s [racon::Polisher::polish] generating consensus [================> ] 7.664580 s [racon::Polisher::polish] generating consensus [=================> ] 8.508554 s [racon::Polisher::polish] generating consensus [==================> ] 9.180553 s [racon::Polisher::polish] generating consensus [===================>] 9.500596 s [racon::Polisher::polish] generating consensus [====================] 9.644231 s +[racon::Polisher::] total = 13.879413 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (13881 ms) +[----------] 10 tests from RaconPolishingTest (46496 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (46991 ms total) +[==========] 15 tests from 2 test suites ran. (46502 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp @@ -754,8 +790,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. +dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -763,12 +799,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3199343/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3199343/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/281659 and its subdirectories -I: Current time: Tue Apr 7 13:52:33 -12 2026 -I: pbuilder-time-stamp: 1775613153 +I: removing directory /srv/workspace/pbuilder/3199343 and its subdirectories +I: Current time: Thu Mar 6 09:31:24 +14 2025 +I: pbuilder-time-stamp: 1741203084