Diff of the two buildlogs:

--
--- b1/build.log	2025-03-14 06:56:58.051898243 +0000
+++ b2/build.log	2025-03-14 07:49:43.617267697 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Thu Apr 16 01:15:41 -12 2026
-I: pbuilder-time-stamp: 1776345341
+I: Current time: Fri Mar 14 20:57:02 +14 2025
+I: pbuilder-time-stamp: 1741935422
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
 I: copying local configuration
@@ -28,52 +28,84 @@
 dpkg-source: info: applying sphinx.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/642106/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/4080173/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos11-amd64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar 14 06:58 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/4080173/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/4080173/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='amd64'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
-  DISTRIBUTION='trixie'
-  HOME='/root'
-  HOST_ARCH='amd64'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=amd64
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 '
+  DIRSTACK=()
+  DISTRIBUTION=trixie
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=x86_64
+  HOST_ARCH=amd64
   IFS=' 	
   '
-  INVOCATION_ID='77b4c6fbd19847a7874f412134be3c22'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='642106'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=aac10bee89f04624b579eb81db6c42cf
+  LANG=C
+  LANGUAGE=et_EE:et
+  LC_ALL=C
+  MACHTYPE=x86_64-pc-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=4080173
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wHaKwDZB/pbuilderrc_zc4f --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wHaKwDZB/b1 --logfile b1/build.log salmon_1.10.2+ds1-1.dsc'
-  SUDO_GID='110'
-  SUDO_UID='105'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://213.165.73.152:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wHaKwDZB/pbuilderrc_exKX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wHaKwDZB/b2 --logfile b2/build.log salmon_1.10.2+ds1-1.dsc'
+  SUDO_GID=111
+  SUDO_UID=106
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://46.16.76.132:3128
 I: uname -a
-  Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 Mar  4  2025 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/642106/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 Mar  4 11:20 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/4080173/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -399,7 +431,7 @@
 Get: 226 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [29.7 kB]
 Get: 227 http://deb.debian.org/debian trixie/main amd64 rapmap-dev all 0.15.0+dfsg-4 [193 kB]
 Get: 228 http://deb.debian.org/debian trixie/main amd64 sphinx-doc all 8.1.3-5 [3487 kB]
-Fetched 153 MB in 4s (40.7 MB/s)
+Fetched 153 MB in 20s (7853 kB/s)
 Preconfiguring packages ...
 Selecting previously unselected package fonts-lato.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19802 files and directories currently installed.)
@@ -1141,8 +1173,8 @@
 Setting up tzdata (2025a-2) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Thu Apr 16 13:16:28 UTC 2026.
-Universal Time is now:  Thu Apr 16 13:16:28 UTC 2026.
+Local time is now:      Fri Mar 14 07:03:48 UTC 2025.
+Universal Time is now:  Fri Mar 14 07:03:48 UTC 2025.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up libboost-atomic1.83.0:amd64 (1.83.0-4.1+b1) ...
@@ -1349,7 +1381,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/salmon-1.10.2+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../salmon_1.10.2+ds1-1_source.changes
+I: user script /srv/workspace/pbuilder/4080173/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/4080173/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/salmon-1.10.2+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../salmon_1.10.2+ds1-1_source.changes
 dpkg-buildpackage: info: source package salmon
 dpkg-buildpackage: info: source version 1.10.2+ds1-1
 dpkg-buildpackage: info: source distribution unstable
@@ -1504,8 +1540,8 @@
 TBB_LIBRARIES = 
 TBB_LIB_INSTALL_DIR = 
 TBBGLOBS = 
--- Configuring done (3.2s)
--- Generating done (0.1s)
+-- Configuring done (26.0s)
+-- Generating done (1.3s)
 CMake Warning:
   Manually-specified variables were not used by the project:
 
@@ -1524,330 +1560,213 @@
    debian/rules override_dh_auto_build
 make[1]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1'
 dh_auto_build
-	cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1
+	cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1
 make[2]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 /usr/bin/cmake -S/build/reproducible-path/salmon-1.10.2+ds1 -B/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks
 make  -f CMakeFiles/Makefile2 all
 make[3]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 make  -f external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/build.make external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/depend
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+make  -f external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/build.make external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/depend
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+make  -f external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/build.make external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/depend
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-make  -f src/CMakeFiles/salmon_core.dir/build.make src/CMakeFiles/salmon_core.dir/depend
+make  -f external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/build.make external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/depend
+make  -f external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/build.make external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/depend
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 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/salmon-1.10.2+ds1 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/DependInfo.cmake "--color="
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-make  -f src/CMakeFiles/UnitTestsMain.dir/build.make src/CMakeFiles/UnitTestsMain.dir/depend
+make  -f external/pufferfish/src/CMakeFiles/puffer.dir/build.make external/pufferfish/src/CMakeFiles/puffer.dir/depend
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+make  -f src/CMakeFiles/salmon_core.dir/build.make src/CMakeFiles/salmon_core.dir/depend
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+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
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+make  -f external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/build.make external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/build
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
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+make  -f external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/build.make external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/build
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+make  -f src/CMakeFiles/alevin_core.dir/build.make src/CMakeFiles/alevin_core.dir/depend
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+make  -f src/CMakeFiles/UnitTestsMain.dir/build.make src/CMakeFiles/UnitTestsMain.dir/depend
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+make  -f src/CMakeFiles/salmon_core.dir/build.make src/CMakeFiles/salmon_core.dir/build
+make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[  1%] Building CXX object external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o
+make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/salmon-1.10.2+ds1 /build/reproducible-path/salmon-1.10.2+ds1/src /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src/CMakeFiles/alevin_core.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/salmon-1.10.2+ds1 /build/reproducible-path/salmon-1.10.2+ds1/src /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src/CMakeFiles/UnitTestsMain.dir/DependInfo.cmake "--color="
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphdump && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/../common -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/. -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/graphdump.cpp
 make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 make  -f external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/build.make external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/build
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-make  -f src/CMakeFiles/alevin_core.dir/build.make src/CMakeFiles/alevin_core.dir/build
+make  -f external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/build.make external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/build
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-make  -f src/CMakeFiles/UnitTestsMain.dir/build.make src/CMakeFiles/UnitTestsMain.dir/build
+[  1%] Building CXX object external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -O3 -MD -MT external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o -MF CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o.d -o CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/Common/SignalHandler.cpp
 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
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+[  1%] Building CXX object external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o
+make  -f external/pufferfish/src/CMakeFiles/puffer.dir/build.make external/pufferfish/src/CMakeFiles/puffer.dir/build
+[  2%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphdump && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/../common -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/. -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/streamfastaparser.cpp
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+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/dnachar.cpp
+[  3%] Building CXX object external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/nthll.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -O3 -MD -MT external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/nthll.cpp.o -MF CMakeFiles/ntcard.dir/nthll.cpp.o.d -o CMakeFiles/ntcard.dir/nthll.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/nthll.cpp
+[  4%] Building CXX object external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphdump && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/../common -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/. -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/dnachar.cpp
 make  -f external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/build.make external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/build
 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-make  -f src/CMakeFiles/salmon_core.dir/build.make src/CMakeFiles/salmon_core.dir/build
-make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
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-make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[  5%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -msse3 -mssse3 -msse4 -msse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extd2_sse.c
+make  -f src/CMakeFiles/alevin_core.dir/build.make src/CMakeFiles/alevin_core.dir/build
 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
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-[  7%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/constructor.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -mno-sse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extf2_sse.c
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishIndexer.cpp.o -MF CMakeFiles/puffer.dir/PufferfishIndexer.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishIndexer.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishIndexer.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/UnitTestsMain.dir/__/tests/UnitTests.cpp.o -MF CMakeFiles/UnitTestsMain.dir/__/tests/UnitTests.cpp.o.d -o CMakeFiles/UnitTestsMain.dir/__/tests/UnitTests.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/tests/UnitTests.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -msse3 -mssse3 -msse4 -msse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o -MF CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o.d -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extz2_sse.c
-[  7%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o
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-[ 12%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -msse3 -mssse3 -msse4 -msse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extf2_sse.c
+[  6%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -mno-sse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extz2_sse.c
-[ 15%] Building CXX object src/CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o
-[ 15%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o
-[ 17%] Building CXX object external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o
-[ 17%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/streamfastaparser.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -mno-sse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extd2_sse.c
-[ 18%] Building CXX object src/CMakeFiles/alevin_core.dir/edlib.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/kalloc.c
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o -MF CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBaseIndex.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphdump && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/../common -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/. -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/streamfastaparser.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extd.c
+[  7%] Building CXX object external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/Common/Fcontrol.cpp.o
+[  8%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -O3 -MD -MT external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/Common/Fcontrol.cpp.o -MF CMakeFiles/ntcard.dir/Common/Fcontrol.cpp.o.d -o CMakeFiles/ntcard.dir/Common/Fcontrol.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/Common/Fcontrol.cpp
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -mno-sse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extd2_sse.c
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+make  -f src/CMakeFiles/UnitTestsMain.dir/build.make src/CMakeFiles/UnitTestsMain.dir/build
+[ 10%] Building CXX object src/CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o -MF CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o.d -o CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/jellyfish/mer_dna.cc
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -O3 -MD -MT external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o -MF CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o.d -o CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/Common/SignalHandler.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/dnachar.cpp
-[ 20%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o
-[ 21%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/alevin_core.dir/edlib.cpp.o -MF CMakeFiles/alevin_core.dir/edlib.cpp.o.d -o CMakeFiles/alevin_core.dir/edlib.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/edlib.cpp
-[ 22%] Building CXX object external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o
-[ 23%] Building C object src/CMakeFiles/salmon_core.dir/xxhash.c.o
-[ 24%] Building CXX object external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o
-[ 26%] Building CXX object src/CMakeFiles/salmon_core.dir/backtrace.cc.o
-[ 26%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o
-[ 25%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o
+[ 11%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -DKSW_SSE2_ONLY -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -mno-sse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extf2_sse.c
+make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[ 12%] Building C object src/CMakeFiles/salmon_core.dir/xxhash.c.o
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-[ 26%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o
-[ 26%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -msse3 -mssse3 -msse4 -msse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o -MF CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o.d -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extd2_sse.c
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_gg2_sse.c
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_gg.c
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphdump && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/../common -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/. -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/graphdump.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/compressedstring.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o -MF CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishSparseIndex.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphdump && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/../common -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump/. -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/dnachar.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/backtrace.cc.o -MF CMakeFiles/salmon_core.dir/backtrace.cc.o.d -o CMakeFiles/salmon_core.dir/backtrace.cc.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/backtrace.cc
-[ 26%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/test.cpp
+[ 11%] Building CXX object src/CMakeFiles/salmon_core.dir/backtrace.cc.o
+[ 13%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/concurrentbitvector.cpp
-[ 26%] Building CXX object src/CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o
+[ 14%] Building CXX object src/CMakeFiles/alevin_core.dir/edlib.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/alevin_core.dir/edlib.cpp.o -MF CMakeFiles/alevin_core.dir/edlib.cpp.o.d -o CMakeFiles/alevin_core.dir/edlib.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/edlib.cpp
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+[ 15%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishIndexer.cpp.o
+[ 15%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o
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+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/constructor.cpp
+[ 16%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o
 cc1: warning: command-line option '-Wno-reorder' is valid for C++/ObjC++ but not for C
 cc1: warning: command-line option '-Wno-deprecated-copy' is valid for C++/ObjC++ but not for C
-[ 26%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishIndex.cpp.o
-[ 30%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o
-[ 31%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/spooky/SpookyV2.cpp
-[ 32%] Building CXX object src/CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o -MF CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o.d -o CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/AlevinUtils.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishIndex.cpp.o -MF CMakeFiles/puffer.dir/PufferfishIndex.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishIndex.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishIndex.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extz.c
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/kalloc.c
+[ 16%] Building CXX object src/CMakeFiles/UnitTestsMain.dir/__/tests/UnitTests.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/UnitTestsMain.dir/__/tests/UnitTests.cpp.o -MF CMakeFiles/UnitTestsMain.dir/__/tests/UnitTests.cpp.o.d -o CMakeFiles/UnitTestsMain.dir/__/tests/UnitTests.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/tests/UnitTests.cpp
+[ 17%] Building CXX object src/CMakeFiles/alevin_core.dir/SingleCellProtocols.cpp.o
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+[ 18%] Building CXX object src/CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o -MF CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o.d -o CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/TranscriptGroup.cpp
-[ 28%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o
-[ 28%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o
-[ 33%] Building CXX object external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/nthll.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o -MF CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishLossyIndex.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/vertexenumerator.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/Common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -O3 -MD -MT external/pufferfish/external/ntcard/CMakeFiles/ntcard.dir/nthll.cpp.o -MF CMakeFiles/ntcard.dir/nthll.cpp.o.d -o CMakeFiles/ntcard.dir/nthll.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/ntcard/nthll.cpp
-[ 34%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/edlib.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/edlib.cpp.o -MF CMakeFiles/puffer.dir/edlib.cpp.o.d -o CMakeFiles/puffer.dir/edlib.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/edlib.cpp
-[ 35%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o
-[ 33%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/Util.cpp.o
+[ 19%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extd.c
+[ 20%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -msse3 -mssse3 -msse4 -msse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o -MF CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o.d -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extf2_sse.c
+[ 21%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extz.c
+[ 22%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/compressedstring.cpp
+[ 23%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o
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+[ 24%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_gg2.c
-[ 35%] Building CXX object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++ -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/KSW2Aligner.cpp
-[ 33%] Building CXX object src/CMakeFiles/alevin_core.dir/SingleCellProtocols.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/alevin_core.dir/SingleCellProtocols.cpp.o -MF CMakeFiles/alevin_core.dir/SingleCellProtocols.cpp.o.d -o CMakeFiles/alevin_core.dir/SingleCellProtocols.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/SingleCellProtocols.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/Util.cpp.o -MF CMakeFiles/puffer.dir/Util.cpp.o.d -o CMakeFiles/puffer.dir/Util.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/Util.cpp
-[ 36%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/common.cpp
-[ 37%] Building CXX object src/CMakeFiles/salmon_core.dir/EffectiveLengthStats.cpp.o
+[ 25%] Building CXX object src/CMakeFiles/salmon_core.dir/EffectiveLengthStats.cpp.o
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-[ 38%] Building CXX object src/CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o
+[ 26%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -O3 -msse -msse2 -msse3 -mssse3 -msse4 -msse4.1 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o -MF CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o.d -o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_extz2_sse.c
+[ 27%] Building CXX object src/CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o -MF CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o.d -o CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/LibraryFormat.cpp
-[ 39%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/rank9sel.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/rank9sel.cpp.o -MF CMakeFiles/puffer.dir/rank9sel.cpp.o.d -o CMakeFiles/puffer.dir/rank9sel.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/rank9sel.cpp
-[ 40%] Building CXX object src/CMakeFiles/salmon_core.dir/VersionChecker.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/VersionChecker.cpp.o -MF CMakeFiles/salmon_core.dir/VersionChecker.cpp.o.d -o CMakeFiles/salmon_core.dir/VersionChecker.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/VersionChecker.cpp
-[ 41%] Building CXX object src/CMakeFiles/salmon_core.dir/GenomicFeature.cpp.o
+[ 28%] Building CXX object src/CMakeFiles/salmon_core.dir/GenomicFeature.cpp.o
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-[ 42%] Building CXX object src/CMakeFiles/salmon_core.dir/SBModel.cpp.o
+[ 29%] Building CXX object src/CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o -MF CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o.d -o CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/AlevinUtils.cpp
+[ 29%] Building C object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/ksw2_gg2_sse.c
+[ 30%] Building CXX object external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++ -DHAVE_KALLOC -DKSW_CPU_DISPATCH -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/src/CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -MF CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o.d -o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/ksw2pp/KSW2Aligner.cpp
+[ 31%] Building CXX object src/CMakeFiles/salmon_core.dir/VersionChecker.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/VersionChecker.cpp.o -MF CMakeFiles/salmon_core.dir/VersionChecker.cpp.o.d -o CMakeFiles/salmon_core.dir/VersionChecker.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/VersionChecker.cpp
+[ 32%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/streamfastaparser.cpp
+[ 33%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/test.cpp
+[ 34%] Building CXX object src/CMakeFiles/salmon_core.dir/SBModel.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/SBModel.cpp.o -MF CMakeFiles/salmon_core.dir/SBModel.cpp.o.d -o CMakeFiles/salmon_core.dir/SBModel.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/SBModel.cpp
-[ 42%] Building CXX object src/CMakeFiles/salmon_core.dir/FastxParser.cpp.o
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[ 34%] Built target ksw2pp_sse2
+[ 34%] Building CXX object src/CMakeFiles/salmon_core.dir/FastxParser.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/FastxParser.cpp.o -MF CMakeFiles/salmon_core.dir/FastxParser.cpp.o.d -o CMakeFiles/salmon_core.dir/FastxParser.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/FastxParser.cpp
-[ 43%] Building CXX object src/CMakeFiles/salmon_core.dir/StadenUtils.cpp.o
+[ 35%] Building CXX object src/CMakeFiles/salmon_core.dir/StadenUtils.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/StadenUtils.cpp.o -MF CMakeFiles/salmon_core.dir/StadenUtils.cpp.o.d -o CMakeFiles/salmon_core.dir/StadenUtils.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/StadenUtils.cpp
-[ 44%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/rank9b.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/rank9b.cpp.o -MF CMakeFiles/puffer.dir/rank9b.cpp.o.d -o CMakeFiles/puffer.dir/rank9b.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/rank9b.cpp
-[ 45%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishStats.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishStats.cpp.o -MF CMakeFiles/puffer.dir/PufferfishStats.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishStats.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishStats.cpp
-[ 46%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishValidate.cpp.o
-[ 47%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishValidate.cpp.o -MF CMakeFiles/puffer.dir/PufferfishValidate.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishValidate.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishValidate.cpp
+[ 36%] Linking CXX static library libntcard.a
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/cmake -P CMakeFiles/ntcard.dir/cmake_clean_target.cmake
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/cmake -E cmake_link_script CMakeFiles/ntcard.dir/link.txt --verbose=1
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinOpts.hpp:5,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SingleCellProtocols.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SingleCellProtocols.cpp:1:
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 37%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o -MF CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o.d -o CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonUtils.cpp
-[ 48%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o
-[ 49%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o -MF CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishKmerQuery.cpp
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o -MF CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishTestLookup.cpp
-[ 49%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishExamine.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishExamine.cpp.o -MF CMakeFiles/puffer.dir/PufferfishExamine.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishExamine.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishExamine.cpp
-[ 50%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/FastxParser.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/FastxParser.cpp.o -MF CMakeFiles/puffer.dir/FastxParser.cpp.o.d -o CMakeFiles/puffer.dir/FastxParser.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FastxParser.cpp
-[ 51%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferFS.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferFS.cpp.o -MF CMakeFiles/puffer.dir/PufferFS.cpp.o.d -o CMakeFiles/puffer.dir/PufferFS.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferFS.cpp
-[ 52%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o -MF CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp
-[ 53%] Building C object external/pufferfish/src/CMakeFiles/puffer.dir/xxhash.c.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/xxhash.c.o -MF CMakeFiles/puffer.dir/xxhash.c.o.d -o CMakeFiles/puffer.dir/xxhash.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/xxhash.c
-cc1: warning: command-line option '-Wno-reorder' is valid for C++/ObjC++ but not for C
-[ 54%] Building CXX object src/CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o
+/usr/bin/ar qc libntcard.a CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o CMakeFiles/ntcard.dir/Common/Fcontrol.cpp.o CMakeFiles/ntcard.dir/nthll.cpp.o
+/usr/bin/ranlib libntcard.a
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[ 37%] Built target ntcard
+[ 38%] Building CXX object src/CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o -MF CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o.d -o CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/DistributionUtils.cpp
-[ 55%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o
+[ 38%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/vertexenumerator.cpp
+[ 39%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o -MF CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o.d -o CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonExceptions.cpp
-[ 56%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonStringUtils.cpp.o
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[ 39%] Built target ksw2pp_sse4
+[ 40%] Building CXX object src/CMakeFiles/salmon_core.dir/SalmonStringUtils.cpp.o
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-[ 57%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/FixFasta.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/FixFasta.cpp.o -MF CMakeFiles/puffer.dir/FixFasta.cpp.o.d -o CMakeFiles/puffer.dir/FixFasta.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp
-[ 58%] Building CXX object src/CMakeFiles/salmon_core.dir/SimplePosBias.cpp.o
+[ 41%] Building CXX object src/CMakeFiles/salmon_core.dir/SimplePosBias.cpp.o
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+[ 42%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/common/spooky/SpookyV2.cpp
 make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 58%] Built target ksw2pp_basic
-make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 59%] Building CXX object src/CMakeFiles/salmon_core.dir/SGSmooth.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/SGSmooth.cpp.o -MF CMakeFiles/salmon_core.dir/SGSmooth.cpp.o.d -o CMakeFiles/salmon_core.dir/SGSmooth.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/SGSmooth.cpp
-[ 59%] Building CXX object src/CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o -MF CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o.d -o CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/install/src/pufferfish/metro/metrohash64.cpp
-[ 59%] Built target ksw2pp_sse4
-[ 59%] Built target ksw2pp_sse2
-[ 60%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/MemCollector.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/MemCollector.cpp.o -MF CMakeFiles/puffer.dir/MemCollector.cpp.o.d -o CMakeFiles/puffer.dir/MemCollector.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/MemCollector.cpp
-[ 60%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/MemChainer.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/MemChainer.cpp.o -MF CMakeFiles/puffer.dir/MemChainer.cpp.o.d -o CMakeFiles/puffer.dir/MemChainer.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/MemChainer.cpp
+[ 42%] Built target ksw2pp_basic
 make  -f external/pufferfish/src/CMakeFiles/ksw2pp.dir/build.make external/pufferfish/src/CMakeFiles/ksw2pp.dir/depend
 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/salmon-1.10.2+ds1 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src/CMakeFiles/ksw2pp.dir/DependInfo.cmake "--color="
 make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 make  -f external/pufferfish/src/CMakeFiles/ksw2pp.dir/build.make external/pufferfish/src/CMakeFiles/ksw2pp.dir/build
-[ 61%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PuffAligner.cpp.o
 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PuffAligner.cpp.o -MF CMakeFiles/puffer.dir/PuffAligner.cpp.o.d -o CMakeFiles/puffer.dir/PuffAligner.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PuffAligner.cpp
-[ 62%] Linking CXX static library libksw2pp.a
+[ 43%] Building CXX object src/CMakeFiles/salmon_core.dir/SGSmooth.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/SGSmooth.cpp.o -MF CMakeFiles/salmon_core.dir/SGSmooth.cpp.o.d -o CMakeFiles/salmon_core.dir/SGSmooth.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/SGSmooth.cpp
+[ 44%] Linking CXX static library libksw2pp.a
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cmake -P CMakeFiles/ksw2pp.dir/cmake_clean_target.cmake
-[ 63%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishAligner.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishAligner.cpp.o -MF CMakeFiles/puffer.dir/PufferfishAligner.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishAligner.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishAligner.cpp
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksw2pp.dir/link.txt --verbose=1
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinOpts.hpp:5,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SingleCellProtocols.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SingleCellProtocols.cpp:1:
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 "/usr/bin/gcc-ar-14" qc libksw2pp.a CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse2.dir/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extd2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extf2_sse.c.o CMakeFiles/ksw2pp_sse4.dir/ksw2pp/ksw2_extz2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/kalloc.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extd.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_extz.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/ksw2_gg2_sse.c.o CMakeFiles/ksw2pp_basic.dir/ksw2pp/KSW2Aligner.cpp.o
 "/usr/bin/gcc-ranlib-14" libksw2pp.a
 make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 64%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o -MF CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o.d -o CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp
-[ 65%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/metro/metrohash64.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/metro/metrohash64.cpp.o -MF CMakeFiles/puffer.dir/metro/metrohash64.cpp.o.d -o CMakeFiles/puffer.dir/metro/metrohash64.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/metro/metrohash64.cpp
-[ 65%] Built target ksw2pp
-[ 66%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o -MF CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o.d -o CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/LibraryFormat.cpp
-[ 67%] Linking CXX static library libntcard.a
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishLossyIndex.hpp:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishLossyIndex.cpp:7:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/cmake -P CMakeFiles/ntcard.dir/cmake_clean_target.cmake
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishBaseIndex.hpp:14,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBaseIndex.cpp:1:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/ntcard && /usr/bin/cmake -E cmake_link_script CMakeFiles/ntcard.dir/link.txt --verbose=1
-/usr/bin/ar qc libntcard.a CMakeFiles/ntcard.dir/Common/SignalHandler.cpp.o CMakeFiles/ntcard.dir/Common/Fcontrol.cpp.o CMakeFiles/ntcard.dir/nthll.cpp.o
-/usr/bin/ranlib libntcard.a
-make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 67%] Built target ntcard
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/Util.cpp:1:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishSparseIndex.hpp:13,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishSparseIndex.cpp:10:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishIndex.hpp:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishIndex.cpp:9:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 44%] Built target ksw2pp
+[ 45%] Building CXX object external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -MD -MT external/pufferfish/external/twopaco/graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphconstructor/common.cpp
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
@@ -1862,78 +1781,16 @@
   198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
       |                      ^
 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishStats.cpp:16:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishTestLookup.cpp:14:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishKmerQuery.cpp:13:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:5:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishBinaryGFAReader.hpp:5,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:1:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishValidate.cpp:15:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 45%] Building CXX object src/CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o -MF CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o.d -o CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/install/src/pufferfish/metro/metrohash64.cpp
+[ 46%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o -MF CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBaseIndex.cpp
+[ 47%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishIndex.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishIndex.cpp.o -MF CMakeFiles/puffer.dir/PufferfishIndex.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishIndex.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishIndex.cpp
+[ 48%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o -MF CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishSparseIndex.cpp
+[ 48%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o -MF CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishLossyIndex.cpp
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/SimplePosBias.hpp:4,
@@ -1946,16 +1803,19 @@
   198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
       |                      ^
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishTestLookup.cpp: In function 'std::vector<CanonicalKmer> get_kmers(const std::string&, uint32_t)':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishTestLookup.cpp:25:78: warning: unused parameter 'k' [-Wunused-parameter]
-   25 | std::vector<CanonicalKmer> get_kmers(const std::string& fasta_file, uint32_t k) {
-      |                                                                     ~~~~~~~~~^
+[ 49%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/edlib.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/edlib.cpp.o -MF CMakeFiles/puffer.dir/edlib.cpp.o.d -o CMakeFiles/puffer.dir/edlib.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/edlib.cpp
+[ 50%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/Util.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/Util.cpp.o -MF CMakeFiles/puffer.dir/Util.cpp.o.d -o CMakeFiles/puffer.dir/Util.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/Util.cpp
+[ 51%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/rank9sel.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/rank9sel.cpp.o -MF CMakeFiles/puffer.dir/rank9sel.cpp.o.d -o CMakeFiles/puffer.dir/rank9sel.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/rank9sel.cpp
+[ 52%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/rank9b.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/rank9b.cpp.o -MF CMakeFiles/puffer.dir/rank9b.cpp.o.d -o CMakeFiles/puffer.dir/rank9b.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/rank9b.cpp
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishIndex.hpp:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/MemCollector.hpp:6,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/MemCollector.cpp:1:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishSparseIndex.hpp:13,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishSparseIndex.cpp:10:
 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -1968,21 +1828,7 @@
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishIndex.hpp:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/MemChainer.hpp:8,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/MemChainer.cpp:2:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PuffAligner.hpp:8,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PuffAligner.cpp:2:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishIndex.cpp:9:
 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -1991,11 +1837,13 @@
   198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
       |                      ^
 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 53%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishValidate.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishValidate.cpp.o -MF CMakeFiles/puffer.dir/PufferfishValidate.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishValidate.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishValidate.cpp
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PuffAligner.hpp:8,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishExamine.cpp:6:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishBaseIndex.hpp:14,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBaseIndex.cpp:1:
 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -2007,19 +1855,8 @@
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/RefSeqConstructor.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:1:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishAligner.cpp:35:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishLossyIndex.hpp:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishLossyIndex.cpp:7:
 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -2203,377 +2040,52 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishBinaryGFAReader.hpp:9:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >; dest_it = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >]'
- 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
-      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = long unsigned int]'
- 2817 |         for (destructive_iterator it = ht.destructive_begin();
-      |                                        ~~~^~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = long unsigned int]'
- 2948 |         _move_from(mover, ht, min_buckets_wanted);
-      |         ^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = long unsigned int]'
- 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
-      |                          ^~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3278:21:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; value_type = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >]'
- 3278 |                 if (_resize_delta(1))
-      |                     ^~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::pair<long unsigned int, bool> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; mapped_type = std::vector<std::pair<long unsigned int, bool> >]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:161:25:   required from here
-  161 |             path[ref_cnt].resize(contigCntPerPath);
-      |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >&)' is deprecated [-Wdeprecated-copy]
- 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
-      |                                                                              ^~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; row_it = spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*; col_it = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >]'
-  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
-      |                                 ^~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; value_type = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; pointer = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; value_type = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::pair<long unsigned int, bool> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; mapped_type = std::vector<std::pair<long unsigned int, bool> >]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:161:25:   required from here
-  161 |             path[ref_cnt].resize(contigCntPerPath);
-      |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::value_type' {aka 'std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >'} to 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::mutable_reference' {aka 'std::pair<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector<std::pair<long unsigned int, bool> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = std::vector<std::pair<long unsigned int, bool> >]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >; dest_it = spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >]'
- 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
-      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2817 |         for (destructive_iterator it = ht.destructive_begin();
-      |                                        ~~~^~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2948 |         _move_from(mover, ht, min_buckets_wanted);
-      |         ^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
-      |                          ^~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3278:21:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
- 3278 |                 if (_resize_delta(1))
-      |                     ^~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:414:43:   required from here
-  414 |                         eqID = eqMap[tlist];
-      |                                           ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >&)' is deprecated [-Wdeprecated-copy]
- 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
-      |                                                                              ^~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; row_it = spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*; col_it = std::pair<const std::vector<unsigned int>, unsigned int>*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >]'
-  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
-      |                                 ^~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>; reference = std::pair<const std::vector<unsigned int>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; pointer = std::pair<const std::vector<unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:414:43:   required from here
-  414 |                         eqID = eqMap[tlist];
-      |                                           ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/RefSeqConstructor.hpp:5:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >; dest_it = spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >]'
- 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
-      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = long unsigned int]'
- 2817 |         for (destructive_iterator it = ht.destructive_begin();
-      |                                        ~~~^~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = long unsigned int]'
- 2948 |         _move_from(mover, ht, min_buckets_wanted);
-      |         ^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = long unsigned int]'
- 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
-      |                          ^~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3278:21:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::DefaultValue; KT = long unsigned int&; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; value_type = std::pair<const unsigned int, pufferfish::util::ContigBlock>]'
- 3278 |                 if (_resize_delta(1))
-      |                     ^~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = unsigned int; T = pufferfish::util::ContigBlock; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; mapped_type = pufferfish::util::ContigBlock]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:143:65:   required from 'Task RefSeqConstructor<PufferfishIndexT>::doDFS(size_t, size_t, bool, pufferfish::util::ContigBlock&, uint32_t, pufferfish::util::ContigBlock&, bool, uint32_t, bool, std::string&, bool) [with PufferfishIndexT = PufferfishIndex; size_t = long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>]'
-  143 |           pufferfish::util::ContigBlock& cb = (*contigSeqCache_)[c.cid];
-      |                                               ~~~~~~~~~~~~~~~~~~^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:466:16:   required from here
-  466 | template class RefSeqConstructor<PufferfishIndex>;
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >&)' is deprecated [-Wdeprecated-copy]
- 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
-      |                                                                              ^~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; row_it = spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*; col_it = std::pair<const unsigned int, pufferfish::util::ContigBlock>*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >]'
-  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
-      |                                 ^~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; value_type = std::pair<const unsigned int, pufferfish::util::ContigBlock>; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; pointer = std::pair<const unsigned int, pufferfish::util::ContigBlock>*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::DefaultValue; KT = long unsigned int&; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; value_type = std::pair<const unsigned int, pufferfish::util::ContigBlock>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = unsigned int; T = pufferfish::util::ContigBlock; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; mapped_type = pufferfish::util::ContigBlock]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:143:65:   required from 'Task RefSeqConstructor<PufferfishIndexT>::doDFS(size_t, size_t, bool, pufferfish::util::ContigBlock&, uint32_t, pufferfish::util::ContigBlock&, bool, uint32_t, bool, std::string&, bool) [with PufferfishIndexT = PufferfishIndex; size_t = long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>]'
-  143 |           pufferfish::util::ContigBlock& cb = (*contigSeqCache_)[c.cid];
-      |                                               ~~~~~~~~~~~~~~~~~~^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:466:16:   required from here
-  466 | template class RefSeqConstructor<PufferfishIndex>;
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::value_type' {aka 'std::pair<const unsigned int, pufferfish::util::ContigBlock>'} to 'spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::mutable_reference' {aka 'std::pair<unsigned int, pufferfish::util::ContigBlock>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = pufferfish::util::ContigBlock; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = pufferfish::util::ContigBlock]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; mutable_value_type = std::pair<unsigned int, pufferfish::util::ContigBlock>; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; pointer = std::pair<const unsigned int, pufferfish::util::ContigBlock>*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::DefaultValue; KT = long unsigned int&; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; value_type = std::pair<const unsigned int, pufferfish::util::ContigBlock>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = unsigned int; T = pufferfish::util::ContigBlock; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; mapped_type = pufferfish::util::ContigBlock]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:143:65:   required from 'Task RefSeqConstructor<PufferfishIndexT>::doDFS(size_t, size_t, bool, pufferfish::util::ContigBlock&, uint32_t, pufferfish::util::ContigBlock&, bool, uint32_t, bool, std::string&, bool) [with PufferfishIndexT = PufferfishIndex; size_t = long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>]'
-  143 |           pufferfish::util::ContigBlock& cb = (*contigSeqCache_)[c.cid];
-      |                                               ~~~~~~~~~~~~~~~~~~^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:466:16:   required from here
-  466 | template class RefSeqConstructor<PufferfishIndex>;
-      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::value_type' {aka 'std::pair<const unsigned int, pufferfish::util::ContigBlock>'} to 'spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::mutable_reference' {aka 'std::pair<unsigned int, pufferfish::util::ContigBlock>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = pufferfish::util::ContigBlock; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = pufferfish::util::ContigBlock]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; mutable_value_type = std::pair<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; pointer = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; value_type = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::pair<long unsigned int, bool> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; mapped_type = std::vector<std::pair<long unsigned int, bool> >]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:161:25:   required from here
-  161 |             path[ref_cnt].resize(contigCntPerPath);
-      |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::value_type' {aka 'std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >'} to 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::mutable_reference' {aka 'std::pair<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector<std::pair<long unsigned int, bool> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = std::vector<std::pair<long unsigned int, bool> >]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mutable_value_type = std::pair<std::vector<unsigned int>, unsigned int>; reference = std::pair<const std::vector<unsigned int>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; pointer = std::pair<const std::vector<unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:414:43:   required from here
-  414 |                         eqID = eqMap[tlist];
-      |                                           ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:4:
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >; dest_it = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >]'
- 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
-      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = long unsigned int]'
- 2817 |         for (destructive_iterator it = ht.destructive_begin();
-      |                                        ~~~^~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = long unsigned int]'
- 2948 |         _move_from(mover, ht, min_buckets_wanted);
-      |         ^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = long unsigned int]'
- 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
-      |                          ^~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3278:21:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; value_type = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >]'
- 3278 |                 if (_resize_delta(1))
-      |                     ^~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::__cxx11::basic_string<char> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; mapped_type = std::vector<std::__cxx11::basic_string<char> >]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:264:46:   required from here
-  264 |                   duplicateNames[dupInfo.txId].push_back(processedName);
-      |                                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >&)' is deprecated [-Wdeprecated-copy]
- 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
-      |                                                                              ^~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; row_it = spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*; col_it = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >]'
-  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
-      |                                 ^~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; value_type = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; pointer = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; value_type = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::__cxx11::basic_string<char> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; mapped_type = std::vector<std::__cxx11::basic_string<char> >]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:264:46:   required from here
-  264 |                   duplicateNames[dupInfo.txId].push_back(processedName);
-      |                                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::value_type' {aka 'std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >'} to 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::mutable_reference' {aka 'std::pair<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector<std::__cxx11::basic_string<char> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = std::vector<std::__cxx11::basic_string<char> >]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; destructive_iterator = spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >; dest_it = spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; destructive_iterator = spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >]'
- 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
-      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; size_type = long unsigned int]'
- 2817 |         for (destructive_iterator it = ht.destructive_begin();
-      |                                        ~~~^~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; size_type = long unsigned int]'
- 2948 |         _move_from(mover, ht, min_buckets_wanted);
-      |         ^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; size_type = long unsigned int]'
- 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
-      |                          ^~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3234:9:   required from 'std::pair<typename spp::sparsetable<Value, Alloc>::ne_iterator, bool> spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::insert(P&&) [with P = std::__cxx11::basic_string<char>&; Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; typename spp::sparsetable<Value, Alloc>::ne_iterator = spp::Two_d_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::bidirectional_iterator_tag>]'
- 3234 |         _resize_delta(1);                      // adding an object, grow if need be
-      |         ^~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:4225:73:   required from 'std::pair<typename spp::sparse_hashtable<Value, Value, HashFcn, spp::sparse_hash_set<Value, HashFcn, EqualKey, Alloc>::Identity, spp::sparse_hash_set<Value, HashFcn, EqualKey, Alloc>::SetKey, EqualKey, Alloc>::const_iterator, bool> spp::sparse_hash_set<Value, HashFcn, EqualKey, Alloc>::insert(P&&) [with P = std::__cxx11::basic_string<char>&; Value = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; typename spp::sparse_hashtable<Value, Value, HashFcn, Identity, SetKey, EqualKey, Alloc>::const_iterator = spp::Two_d_iterator<const std::__cxx11::basic_string<char>, const spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, const std::__cxx11::basic_string<char>*, std::bidirectional_iterator_tag>]'
- 4225 |     std::pair<iterator, bool> insert(P&& obj)        { return rep.insert(std::forward<P>(obj)); }
-      |                                                               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:490:26:   required from here
-  490 |     auto it = dset.insert(dname);
-      |               ~~~~~~~~~~~^~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >&)' is deprecated [-Wdeprecated-copy]
- 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
-      |                                                                              ^~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::__cxx11::basic_string<char>; row_it = spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*; col_it = std::__cxx11::basic_string<char>*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >]'
-  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
-      |                                 ^~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; mutable_value_type = std::pair<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; pointer = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; value_type = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::__cxx11::basic_string<char> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; mapped_type = std::vector<std::__cxx11::basic_string<char> >]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:264:46:   required from here
-  264 |                   duplicateNames[dupInfo.txId].push_back(processedName);
-      |                                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::value_type' {aka 'std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >'} to 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::mutable_reference' {aka 'std::pair<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector<std::__cxx11::basic_string<char> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = std::vector<std::__cxx11::basic_string<char> >]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+[ 54%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishStats.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishStats.cpp.o -MF CMakeFiles/puffer.dir/PufferfishStats.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishStats.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishStats.cpp
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/Util.cpp:1:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishValidate.cpp:15:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 55%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o -MF CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishTestLookup.cpp
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishStats.cpp:16:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonUtils.hpp:30,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/UtilityFunctions.hpp:4,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SBModel.hpp:6,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SBModel.cpp:1:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Transcript.hpp:8,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/DistributionUtils.cpp:3:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -2597,12 +2109,29 @@
   198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
       |                      ^
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 55%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishExamine.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishExamine.cpp.o -MF CMakeFiles/puffer.dir/PufferfishExamine.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishExamine.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishExamine.cpp
+[ 56%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o -MF CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishKmerQuery.cpp
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishTestLookup.cpp:14:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonUtils.hpp:30,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Transcript.hpp:8,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/DistributionUtils.cpp:3:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/UtilityFunctions.hpp:4,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SBModel.hpp:6,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SBModel.cpp:1:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -2611,10 +2140,56 @@
   198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
       |                      ^
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 57%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/FastxParser.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/FastxParser.cpp.o -MF CMakeFiles/puffer.dir/FastxParser.cpp.o.d -o CMakeFiles/puffer.dir/FastxParser.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FastxParser.cpp
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishTestLookup.cpp: In function 'std::vector<CanonicalKmer> get_kmers(const std::string&, uint32_t)':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishTestLookup.cpp:25:78: warning: unused parameter 'k' [-Wunused-parameter]
+   25 | std::vector<CanonicalKmer> get_kmers(const std::string& fasta_file, uint32_t k) {
+      |                                                                     ~~~~~~~~~^
 /build/reproducible-path/salmon-1.10.2+ds1/src/AlevinUtils.cpp: In function 'bool alevin::utils::extractBarcode(std::string&, std::string&, ProtocolT&, std::string&) [with ProtocolT = alevin::protocols::SciSeq3; std::string = std::__cxx11::basic_string<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/AlevinUtils.cpp:350:104: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
   350 |       if (pt.anchorPos != std::string::npos && ( pt.anchorPos == pt.maxHairpinIndexLen || pt.anchorPos == pt.maxHairpinIndexLen -1) // only 2 possible values of pt.anchorPos
       |                                                                                           ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishKmerQuery.cpp:13:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 58%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o -MF CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PuffAligner.hpp:8,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishExamine.cpp:6:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishBinaryGFAReader.hpp:5,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:1:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<unsigned int> > >; value_type = std::pair<const std::__cxx11::basic_string<char>, std::vector<unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, std::vector<unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, std::vector<unsigned int> >; T = std::pair<const std::__cxx11::basic_string<char>, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, std::vector<unsigned int> > >; size_type = unsigned char]'
@@ -2775,13 +2350,229 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-[ 68%] Linking CXX static library libgraphdump.a
+[ 59%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferFS.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferFS.cpp.o -MF CMakeFiles/puffer.dir/PufferFS.cpp.o.d -o CMakeFiles/puffer.dir/PufferFS.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferFS.cpp
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishBinaryGFAReader.hpp:9:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >; dest_it = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >]'
+ 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
+      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = long unsigned int]'
+ 2817 |         for (destructive_iterator it = ht.destructive_begin();
+      |                                        ~~~^~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = long unsigned int]'
+ 2948 |         _move_from(mover, ht, min_buckets_wanted);
+      |         ^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = long unsigned int]'
+ 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
+      |                          ^~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3278:21:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; value_type = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >]'
+ 3278 |                 if (_resize_delta(1))
+      |                     ^~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::pair<long unsigned int, bool> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; mapped_type = std::vector<std::pair<long unsigned int, bool> >]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:161:25:   required from here
+  161 |             path[ref_cnt].resize(contigCntPerPath);
+      |                         ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >&)' is deprecated [-Wdeprecated-copy]
+ 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
+      |                                                                              ^~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*, std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; row_it = spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >*; col_it = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >]'
+  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
+      |                                 ^~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; value_type = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; pointer = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; value_type = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::pair<long unsigned int, bool> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; mapped_type = std::vector<std::pair<long unsigned int, bool> >]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:161:25:   required from here
+  161 |             path[ref_cnt].resize(contigCntPerPath);
+      |                         ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::value_type' {aka 'std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >'} to 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::mutable_reference' {aka 'std::pair<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector<std::pair<long unsigned int, bool> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = std::vector<std::pair<long unsigned int, bool> >]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >; dest_it = spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >]'
+ 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
+      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2817 |         for (destructive_iterator it = ht.destructive_begin();
+      |                                        ~~~^~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2948 |         _move_from(mover, ht, min_buckets_wanted);
+      |         ^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
+      |                          ^~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3278:21:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
+ 3278 |                 if (_resize_delta(1))
+      |                     ^~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:414:43:   required from here
+  414 |                         eqID = eqMap[tlist];
+      |                                           ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >&)' is deprecated [-Wdeprecated-copy]
+ 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
+      |                                                                              ^~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::pair<const std::vector<unsigned int>, unsigned int>, spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*, std::pair<const std::vector<unsigned int>, unsigned int>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; row_it = spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >*; col_it = std::pair<const std::vector<unsigned int>, unsigned int>*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >]'
+  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
+      |                                 ^~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>; reference = std::pair<const std::vector<unsigned int>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; pointer = std::pair<const std::vector<unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:414:43:   required from here
+  414 |                         eqID = eqMap[tlist];
+      |                                           ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; mutable_value_type = std::pair<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; pointer = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; reference = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; value_type = std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::pair<long unsigned int, bool> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > >; mapped_type = std::vector<std::pair<long unsigned int, bool> >]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:161:25:   required from here
+  161 |             path[ref_cnt].resize(contigCntPerPath);
+      |                         ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::value_type' {aka 'std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >'} to 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::pair<long unsigned int, bool> > > > >::mutable_reference' {aka 'std::pair<long unsigned int, std::vector<std::pair<long unsigned int, bool> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector<std::pair<long unsigned int, bool> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = std::vector<std::pair<long unsigned int, bool> >]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+[ 60%] Building C object external/pufferfish/src/CMakeFiles/puffer.dir/xxhash.c.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cc  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/xxhash.c.o -MF CMakeFiles/puffer.dir/xxhash.c.o.d -o CMakeFiles/puffer.dir/xxhash.c.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/xxhash.c
+cc1: warning: command-line option '-Wno-reorder' is valid for C++/ObjC++ but not for C
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mutable_value_type = std::pair<std::vector<unsigned int>, unsigned int>; reference = std::pair<const std::vector<unsigned int>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; pointer = std::pair<const std::vector<unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher>::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = pufferfish::BinaryGFAReader::serializeContigTable(const std::string&, const std::vector<std::pair<std::__cxx11::basic_string<char>, short unsigned int> >&, const std::vector<unsigned int>&)::VecHasher; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishBinaryGFAReader.cpp:414:43:   required from here
+  414 |                         eqID = eqMap[tlist];
+      |                                           ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+[ 61%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/FixFasta.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/FixFasta.cpp.o -MF CMakeFiles/puffer.dir/FixFasta.cpp.o.d -o CMakeFiles/puffer.dir/FixFasta.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp
+[ 62%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/MemCollector.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/MemCollector.cpp.o -MF CMakeFiles/puffer.dir/MemCollector.cpp.o.d -o CMakeFiles/puffer.dir/MemCollector.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/MemCollector.cpp
+[ 63%] Linking CXX static library libgraphdump.a
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphdump && /usr/bin/cmake -P CMakeFiles/graphdump.dir/cmake_clean_target.cmake
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/external/twopaco/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1
+[ 63%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/MemChainer.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/MemChainer.cpp.o -MF CMakeFiles/puffer.dir/MemChainer.cpp.o.d -o CMakeFiles/puffer.dir/MemChainer.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/MemChainer.cpp
 /usr/bin/ar qc libgraphdump.a CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o
 /usr/bin/ranlib libgraphdump.a
 make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 68%] Built target graphdump
+[ 63%] Built target graphdump
+[ 64%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PuffAligner.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PuffAligner.cpp.o -MF CMakeFiles/puffer.dir/PuffAligner.cpp.o.d -o CMakeFiles/puffer.dir/PuffAligner.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PuffAligner.cpp
+[ 65%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishAligner.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/PufferfishAligner.cpp.o -MF CMakeFiles/puffer.dir/PufferfishAligner.cpp.o.d -o CMakeFiles/puffer.dir/PufferfishAligner.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishAligner.cpp
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:5:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishIndex.hpp:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/MemCollector.hpp:6,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/MemCollector.cpp:1:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PuffAligner.hpp:8,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PuffAligner.cpp:2:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
@@ -2834,6 +2625,20 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/PufferfishIndex.hpp:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/MemChainer.hpp:8,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/MemChainer.cpp:2:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
  1407 |             _init_val((mutable_pointer)&_group[num_items], val);
@@ -2890,6 +2695,251 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/PufferfishAligner.cpp:35:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 66%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o -MF CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o.d -o CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:4:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >; dest_it = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >]'
+ 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
+      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = long unsigned int]'
+ 2817 |         for (destructive_iterator it = ht.destructive_begin();
+      |                                        ~~~^~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = long unsigned int]'
+ 2948 |         _move_from(mover, ht, min_buckets_wanted);
+      |         ^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = long unsigned int]'
+ 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
+      |                          ^~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3278:21:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; value_type = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >]'
+ 3278 |                 if (_resize_delta(1))
+      |                     ^~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::__cxx11::basic_string<char> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; mapped_type = std::vector<std::__cxx11::basic_string<char> >]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:264:46:   required from here
+  264 |                   duplicateNames[dupInfo.txId].push_back(processedName);
+      |                                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >&)' is deprecated [-Wdeprecated-copy]
+ 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
+      |                                                                              ^~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*, std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*, std::input_iterator_tag, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; row_it = spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >*; col_it = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >]'
+  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
+      |                                 ^~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; value_type = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; pointer = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; value_type = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::__cxx11::basic_string<char> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; mapped_type = std::vector<std::__cxx11::basic_string<char> >]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:264:46:   required from here
+  264 |                   duplicateNames[dupInfo.txId].push_back(processedName);
+      |                                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::value_type' {aka 'std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >'} to 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::mutable_reference' {aka 'std::pair<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector<std::__cxx11::basic_string<char> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = std::vector<std::__cxx11::basic_string<char> >]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; destructive_iterator = spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >; dest_it = spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; destructive_iterator = spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >]'
+ 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
+      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; size_type = long unsigned int]'
+ 2817 |         for (destructive_iterator it = ht.destructive_begin();
+      |                                        ~~~^~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; size_type = long unsigned int]'
+ 2948 |         _move_from(mover, ht, min_buckets_wanted);
+      |         ^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; size_type = long unsigned int]'
+ 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
+      |                          ^~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3234:9:   required from 'std::pair<typename spp::sparsetable<Value, Alloc>::ne_iterator, bool> spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::insert(P&&) [with P = std::__cxx11::basic_string<char>&; Value = std::__cxx11::basic_string<char>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::Identity; SetKey = spp::sparse_hash_set<std::__cxx11::basic_string<char> >::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; typename spp::sparsetable<Value, Alloc>::ne_iterator = spp::Two_d_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::bidirectional_iterator_tag>]'
+ 3234 |         _resize_delta(1);                      // adding an object, grow if need be
+      |         ^~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:4225:73:   required from 'std::pair<typename spp::sparse_hashtable<Value, Value, HashFcn, spp::sparse_hash_set<Value, HashFcn, EqualKey, Alloc>::Identity, spp::sparse_hash_set<Value, HashFcn, EqualKey, Alloc>::SetKey, EqualKey, Alloc>::const_iterator, bool> spp::sparse_hash_set<Value, HashFcn, EqualKey, Alloc>::insert(P&&) [with P = std::__cxx11::basic_string<char>&; Value = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >; typename spp::sparse_hashtable<Value, Value, HashFcn, Identity, SetKey, EqualKey, Alloc>::const_iterator = spp::Two_d_iterator<const std::__cxx11::basic_string<char>, const spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, const std::__cxx11::basic_string<char>*, std::bidirectional_iterator_tag>]'
+ 4225 |     std::pair<iterator, bool> insert(P&& obj)        { return rep.insert(std::forward<P>(obj)); }
+      |                                                               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:490:26:   required from here
+  490 |     auto it = dset.insert(dname);
+      |               ~~~~~~~~~~~^~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >&)' is deprecated [-Wdeprecated-copy]
+ 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
+      |                                                                              ^~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::__cxx11::basic_string<char>, spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*, std::__cxx11::basic_string<char>*, std::input_iterator_tag, spp::libc_allocator<std::__cxx11::basic_string<char> > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::__cxx11::basic_string<char>; row_it = spp::sparsegroup<std::__cxx11::basic_string<char>, spp::libc_allocator<std::__cxx11::basic_string<char> > >*; col_it = std::__cxx11::basic_string<char>*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::__cxx11::basic_string<char> >]'
+  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
+      |                                 ^~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; mutable_value_type = std::pair<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; pointer = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; reference = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; value_type = std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = std::vector<std::__cxx11::basic_string<char> >; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > >; mapped_type = std::vector<std::__cxx11::basic_string<char> >]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:264:46:   required from here
+  264 |                   duplicateNames[dupInfo.txId].push_back(processedName);
+      |                                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::value_type' {aka 'std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >'} to 'spp::sparsegroup<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > >, spp::libc_allocator<std::pair<const long unsigned int, std::vector<std::__cxx11::basic_string<char> > > > >::mutable_reference' {aka 'std::pair<long unsigned int, std::vector<std::__cxx11::basic_string<char> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = std::vector<std::__cxx11::basic_string<char> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = std::vector<std::__cxx11::basic_string<char> >]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/RefSeqConstructor.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:1:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 67%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/metro/metrohash64.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/metro/metrohash64.cpp.o -MF CMakeFiles/puffer.dir/metro/metrohash64.cpp.o.d -o CMakeFiles/puffer.dir/metro/metrohash64.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/metro/metrohash64.cpp
+[ 68%] Building CXX object external/pufferfish/src/CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/c++  -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -I/build/reproducible-path/salmon-1.10.2+ds1/include -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -MD -MT external/pufferfish/src/CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o -MF CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o.d -o CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/LibraryFormat.cpp
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/RefSeqConstructor.hpp:5:
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_mk_destructive_iterator(dest_it) const [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >; dest_it = spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2607:61:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_iterator spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::destructive_begin() [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; destructive_iterator = spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >]'
+ 2607 |     destructive_iterator destructive_begin()       { return _mk_destructive_iterator(table.destructive_begin()); }
+      |                                                             ^~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2817:43:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = long unsigned int]'
+ 2817 |         for (destructive_iterator it = ht.destructive_begin();
+      |                                        ~~~^~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = long unsigned int]'
+ 2948 |         _move_from(mover, ht, min_buckets_wanted);
+      |         ^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2745:26:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_resize_delta(size_type) [with Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = long unsigned int]'
+ 2745 |         sparse_hashtable tmp(MoveDontCopy, *this, resize_to);
+      |                          ^~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3278:21:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::DefaultValue; KT = long unsigned int&; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; value_type = std::pair<const unsigned int, pufferfish::util::ContigBlock>]'
+ 3278 |                 if (_resize_delta(1))
+      |                     ^~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = unsigned int; T = pufferfish::util::ContigBlock; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; mapped_type = pufferfish::util::ContigBlock]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:143:65:   required from 'Task RefSeqConstructor<PufferfishIndexT>::doDFS(size_t, size_t, bool, pufferfish::util::ContigBlock&, uint32_t, pufferfish::util::ContigBlock&, bool, uint32_t, bool, std::string&, bool) [with PufferfishIndexT = PufferfishIndex; size_t = long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>]'
+  143 |           pufferfish::util::ContigBlock& cb = (*contigSeqCache_)[c.cid];
+      |                                               ~~~~~~~~~~~~~~~~~~^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:466:16:   required from here
+  466 | template class RefSeqConstructor<PufferfishIndex>;
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2632:78: warning: implicitly-declared 'constexpr spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::Two_d_destructive_iterator(const spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >&)' is deprecated [-Wdeprecated-copy]
+ 2632 |     destructive_iterator _mk_destructive_iterator(dest_it it) const { return it; }
+      |                                                                              ^~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:946:33: note: because 'spp::Two_d_destructive_iterator<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*, std::pair<const unsigned int, pufferfish::util::ContigBlock>*, std::input_iterator_tag, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >' has user-provided 'spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>& spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>::operator=(const spp::Two_d_destructive_iterator<T, row_it, col_it, iter_type, Alloc>&) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; row_it = spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >*; col_it = std::pair<const unsigned int, pufferfish::util::ContigBlock>*; iter_type = std::input_iterator_tag; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >]'
+  946 |     Two_d_destructive_iterator& operator=(const Two_d_destructive_iterator &o);
+      |                                 ^~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; value_type = std::pair<const unsigned int, pufferfish::util::ContigBlock>; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; pointer = std::pair<const unsigned int, pufferfish::util::ContigBlock>*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::DefaultValue; KT = long unsigned int&; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; value_type = std::pair<const unsigned int, pufferfish::util::ContigBlock>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = unsigned int; T = pufferfish::util::ContigBlock; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; mapped_type = pufferfish::util::ContigBlock]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:143:65:   required from 'Task RefSeqConstructor<PufferfishIndexT>::doDFS(size_t, size_t, bool, pufferfish::util::ContigBlock&, uint32_t, pufferfish::util::ContigBlock&, bool, uint32_t, bool, std::string&, bool) [with PufferfishIndexT = PufferfishIndex; size_t = long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>]'
+  143 |           pufferfish::util::ContigBlock& cb = (*contigSeqCache_)[c.cid];
+      |                                               ~~~~~~~~~~~~~~~~~~^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:466:16:   required from here
+  466 | template class RefSeqConstructor<PufferfishIndex>;
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::value_type' {aka 'std::pair<const unsigned int, pufferfish::util::ContigBlock>'} to 'spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::mutable_reference' {aka 'std::pair<unsigned int, pufferfish::util::ContigBlock>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = pufferfish::util::ContigBlock; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = pufferfish::util::ContigBlock]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; mutable_value_type = std::pair<unsigned int, pufferfish::util::ContigBlock>; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; pointer = std::pair<const unsigned int, pufferfish::util::ContigBlock>*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, pufferfish::util::ContigBlock>; T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; reference = std::pair<const unsigned int, pufferfish::util::ContigBlock>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::DefaultValue; KT = long unsigned int&; Value = std::pair<const unsigned int, pufferfish::util::ContigBlock>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, pufferfish::util::ContigBlock>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; value_type = std::pair<const unsigned int, pufferfish::util::ContigBlock>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = unsigned int; T = pufferfish::util::ContigBlock; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> >; mapped_type = pufferfish::util::ContigBlock]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:143:65:   required from 'Task RefSeqConstructor<PufferfishIndexT>::doDFS(size_t, size_t, bool, pufferfish::util::ContigBlock&, uint32_t, pufferfish::util::ContigBlock&, bool, uint32_t, bool, std::string&, bool) [with PufferfishIndexT = PufferfishIndex; size_t = long unsigned int; uint32_t = unsigned int; std::string = std::__cxx11::basic_string<char>]'
+  143 |           pufferfish::util::ContigBlock& cb = (*contigSeqCache_)[c.cid];
+      |                                               ~~~~~~~~~~~~~~~~~~^
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/RefSeqConstructor.cpp:466:16:   required from here
+  466 | template class RefSeqConstructor<PufferfishIndex>;
+      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::value_type' {aka 'std::pair<const unsigned int, pufferfish::util::ContigBlock>'} to 'spp::sparsegroup<std::pair<const unsigned int, pufferfish::util::ContigBlock>, spp::libc_allocator<std::pair<const unsigned int, pufferfish::util::ContigBlock> > >::mutable_reference' {aka 'std::pair<unsigned int, pufferfish::util::ContigBlock>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = pufferfish::util::ContigBlock; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = pufferfish::util::ContigBlock]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+[ 69%] Linking CXX static library libalevin_core.a
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/alevin_core.dir/cmake_clean_target.cmake
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/alevin_core.dir/link.txt --verbose=1
+"/usr/bin/gcc-ar-14" qc libalevin_core.a CMakeFiles/alevin_core.dir/edlib.cpp.o CMakeFiles/alevin_core.dir/SingleCellProtocols.cpp.o CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o
+"/usr/bin/gcc-ranlib-14" libalevin_core.a
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[ 69%] Built target alevin_core
+[ 70%] Linking CXX static library libsalmon_core.a
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/salmon_core.dir/cmake_clean_target.cmake
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/salmon_core.dir/link.txt --verbose=1
+"/usr/bin/gcc-ar-14" qc libsalmon_core.a CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o CMakeFiles/salmon_core.dir/backtrace.cc.o CMakeFiles/salmon_core.dir/xxhash.c.o CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o CMakeFiles/salmon_core.dir/EffectiveLengthStats.cpp.o CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o CMakeFiles/salmon_core.dir/GenomicFeature.cpp.o CMakeFiles/salmon_core.dir/VersionChecker.cpp.o CMakeFiles/salmon_core.dir/SBModel.cpp.o CMakeFiles/salmon_core.dir/FastxParser.cpp.o CMakeFiles/salmon_core.dir/StadenUtils.cpp.o CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o CMakeFiles/salmon_core.dir/SalmonStringUtils.cpp.o CMakeFiles/salmon_core.dir/SimplePosBias.cpp.o CMakeFiles/salmon_core.dir/SGSmooth.cpp.o CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o
+"/usr/bin/gcc-ranlib-14" libsalmon_core.a
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[ 70%] Built target salmon_core
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/digestpp/algorithm/sha2.hpp:9,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/digestpp/digestpp.hpp:6,
                  from /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/src/FixFasta.cpp:27:
@@ -3115,48 +3165,27 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/include/digestpp/hasher.hpp:169:39: note: at offset 60 into object 'byte' of size 1
   169 |                         unsigned char byte = *begin++;
       |                                       ^~~~
-[ 69%] Linking CXX static library libalevin_core.a
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/alevin_core.dir/cmake_clean_target.cmake
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/alevin_core.dir/link.txt --verbose=1
-"/usr/bin/gcc-ar-14" qc libalevin_core.a CMakeFiles/alevin_core.dir/edlib.cpp.o CMakeFiles/alevin_core.dir/SingleCellProtocols.cpp.o CMakeFiles/alevin_core.dir/AlevinUtils.cpp.o
-"/usr/bin/gcc-ranlib-14" libalevin_core.a
-make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 69%] Built target alevin_core
-[ 70%] Linking CXX static library libsalmon_core.a
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/salmon_core.dir/cmake_clean_target.cmake
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/salmon_core.dir/link.txt --verbose=1
-"/usr/bin/gcc-ar-14" qc libsalmon_core.a CMakeFiles/salmon_core.dir/jellyfish/mer_dna.cc.o CMakeFiles/salmon_core.dir/backtrace.cc.o CMakeFiles/salmon_core.dir/xxhash.c.o CMakeFiles/salmon_core.dir/TranscriptGroup.cpp.o CMakeFiles/salmon_core.dir/EffectiveLengthStats.cpp.o CMakeFiles/salmon_core.dir/LibraryFormat.cpp.o CMakeFiles/salmon_core.dir/GenomicFeature.cpp.o CMakeFiles/salmon_core.dir/VersionChecker.cpp.o CMakeFiles/salmon_core.dir/SBModel.cpp.o CMakeFiles/salmon_core.dir/FastxParser.cpp.o CMakeFiles/salmon_core.dir/StadenUtils.cpp.o CMakeFiles/salmon_core.dir/SalmonUtils.cpp.o CMakeFiles/salmon_core.dir/DistributionUtils.cpp.o CMakeFiles/salmon_core.dir/SalmonExceptions.cpp.o CMakeFiles/salmon_core.dir/SalmonStringUtils.cpp.o CMakeFiles/salmon_core.dir/SimplePosBias.cpp.o CMakeFiles/salmon_core.dir/SGSmooth.cpp.o CMakeFiles/salmon_core.dir/__/external/install/src/pufferfish/metro/metrohash64.cpp.o
-"/usr/bin/gcc-ranlib-14" libsalmon_core.a
-make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 70%] Built target salmon_core
 [ 71%] Linking CXX static library libUnitTestsMain.a
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/UnitTestsMain.dir/cmake_clean_target.cmake
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/UnitTestsMain.dir/link.txt --verbose=1
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-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cmake -P CMakeFiles/puffer.dir/cmake_clean_target.cmake
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/puffer.dir/link.txt --verbose=1
 /usr/bin/ar qc libUnitTestsMain.a CMakeFiles/UnitTestsMain.dir/__/tests/UnitTests.cpp.o
 /usr/bin/ranlib libUnitTestsMain.a
 make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 72%] Built target UnitTestsMain
+[ 71%] Built target UnitTestsMain
 make  -f src/CMakeFiles/unitTests.dir/build.make src/CMakeFiles/unitTests.dir/depend
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 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 73%] Building CXX object src/CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o
-[ 74%] Building CXX object src/CMakeFiles/unitTests.dir/__/external/install/src/pufferfish/rank9b.cpp.o
+[ 72%] Building CXX object src/CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o -MF CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o.d -o CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/FragmentLengthDistribution.cpp
+[ 73%] Building CXX object src/CMakeFiles/unitTests.dir/__/external/install/src/pufferfish/rank9b.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/unitTests.dir/__/external/install/src/pufferfish/rank9b.cpp.o -MF CMakeFiles/unitTests.dir/__/external/install/src/pufferfish/rank9b.cpp.o.d -o CMakeFiles/unitTests.dir/__/external/install/src/pufferfish/rank9b.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/external/install/src/pufferfish/rank9b.cpp
-[ 76%] Building CXX object src/CMakeFiles/unitTests.dir/__/tests/LibraryTypeTests.cpp.o
-[ 76%] Building CXX object src/CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o -MF CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o.d -o CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/tests/GCSampleTests.cpp
+[ 74%] Building CXX object src/CMakeFiles/unitTests.dir/__/tests/LibraryTypeTests.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/unitTests.dir/__/tests/LibraryTypeTests.cpp.o -MF CMakeFiles/unitTests.dir/__/tests/LibraryTypeTests.cpp.o.d -o CMakeFiles/unitTests.dir/__/tests/LibraryTypeTests.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/tests/LibraryTypeTests.cpp
-/usr/bin/ar qc libpuffer.a CMakeFiles/puffer.dir/PufferfishIndexer.cpp.o CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o CMakeFiles/puffer.dir/PufferfishIndex.cpp.o CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o CMakeFiles/puffer.dir/edlib.cpp.o CMakeFiles/puffer.dir/Util.cpp.o CMakeFiles/puffer.dir/rank9sel.cpp.o CMakeFiles/puffer.dir/rank9b.cpp.o CMakeFiles/puffer.dir/PufferfishValidate.cpp.o CMakeFiles/puffer.dir/PufferfishStats.cpp.o CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o CMakeFiles/puffer.dir/PufferfishExamine.cpp.o CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o CMakeFiles/puffer.dir/FastxParser.cpp.o CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o CMakeFiles/puffer.dir/PufferFS.cpp.o CMakeFiles/puffer.dir/xxhash.c.o CMakeFiles/puffer.dir/FixFasta.cpp.o CMakeFiles/puffer.dir/MemCollector.cpp.o CMakeFiles/puffer.dir/MemChainer.cpp.o CMakeFiles/puffer.dir/PuffAligner.cpp.o CMakeFiles/puffer.dir/PufferfishAligner.cpp.o CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o CMakeFiles/puffer.dir/metro/metrohash64.cpp.o CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o
-/usr/bin/ranlib libpuffer.a
-make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 76%] Built target puffer
+[ 75%] Building CXX object src/CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_TIMER_DYN_LINK -DBOOST_TIMER_NO_LIB -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -ftree-vectorize -funroll-loops -fPIC -fomit-frame-pointer -O3 -DNDEBUG -DSTX_NO_STD_STRING_VIEW -D__STDC_FORMAT_MACROS -static-libstdc++ -DHAVE_NUMERIC_LIMITS128 -Wall -Wno-unknown-pragmas -Wno-reorder -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-function -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o -MF CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o.d -o CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/tests/GCSampleTests.cpp
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
@@ -3196,8 +3225,15 @@
   198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
       |                      ^
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 76%] Linking CXX static library libpuffer.a
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cmake -P CMakeFiles/puffer.dir/cmake_clean_target.cmake
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/external/pufferfish/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/puffer.dir/link.txt --verbose=1
 [ 77%] Linking CXX executable unitTests
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/unitTests.dir/link.txt --verbose=1
+/usr/bin/ar qc libpuffer.a CMakeFiles/puffer.dir/PufferfishIndexer.cpp.o CMakeFiles/puffer.dir/PufferfishBaseIndex.cpp.o CMakeFiles/puffer.dir/PufferfishIndex.cpp.o CMakeFiles/puffer.dir/PufferfishSparseIndex.cpp.o CMakeFiles/puffer.dir/PufferfishLossyIndex.cpp.o CMakeFiles/puffer.dir/edlib.cpp.o CMakeFiles/puffer.dir/Util.cpp.o CMakeFiles/puffer.dir/rank9sel.cpp.o CMakeFiles/puffer.dir/rank9b.cpp.o CMakeFiles/puffer.dir/PufferfishValidate.cpp.o CMakeFiles/puffer.dir/PufferfishStats.cpp.o CMakeFiles/puffer.dir/PufferfishTestLookup.cpp.o CMakeFiles/puffer.dir/PufferfishExamine.cpp.o CMakeFiles/puffer.dir/PufferfishKmerQuery.cpp.o CMakeFiles/puffer.dir/FastxParser.cpp.o CMakeFiles/puffer.dir/PufferfishBinaryGFAReader.cpp.o CMakeFiles/puffer.dir/PufferFS.cpp.o CMakeFiles/puffer.dir/xxhash.c.o CMakeFiles/puffer.dir/FixFasta.cpp.o CMakeFiles/puffer.dir/MemCollector.cpp.o CMakeFiles/puffer.dir/MemChainer.cpp.o CMakeFiles/puffer.dir/PuffAligner.cpp.o CMakeFiles/puffer.dir/PufferfishAligner.cpp.o CMakeFiles/puffer.dir/RefSeqConstructor.cpp.o CMakeFiles/puffer.dir/metro/metrohash64.cpp.o CMakeFiles/puffer.dir/__/__/__/src/LibraryFormat.cpp.o
+/usr/bin/ranlib libpuffer.a
+make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
+[ 77%] Built target puffer
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/unitTests.dir/link.d CMakeFiles/unitTests.dir/FragmentLengthDistribution.cpp.o CMakeFiles/unitTests.dir/__/external/install/src/pufferfish/rank9b.cpp.o CMakeFiles/unitTests.dir/__/tests/GCSampleTests.cpp.o CMakeFiles/unitTests.dir/__/tests/LibraryTypeTests.cpp.o -o unitTests   -L/build/reproducible-path/salmon-1.10.2+ds1/lib  -L/build/reproducible-path/salmon-1.10.2+ds1/external/install/lib  -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" -lboost_iostreams -lboost_filesystem -lboost_system -lboost_timer -lboost_chrono -lboost_program_options -lboost_regex libsalmon_core.a libalevin_core.a -lgff libUnitTestsMain.a /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_timer.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libstaden-read.so /usr/lib/x86_64-linux-gnu/libhtscodecs.so /usr/lib/x86_64-linux-gnu/libcurl.so -lz -lm -llzma -lbz2 -ltbb -ltbbmalloc -lgomp -lrt -ldl /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0
 Copying unitTests
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E copy /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src/unitTests /build/reproducible-path/salmon-1.10.2+ds1/tests/unitTests
@@ -3216,54 +3252,46 @@
 make[4]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
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 make[4]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
-[ 81%] Building CXX object src/CMakeFiles/salmon.dir/DedupUMI.cpp.o
-[ 81%] Building CXX object src/CMakeFiles/salmon.dir/EMUtils.cpp.o
-[ 81%] Building CXX object src/CMakeFiles/salmon.dir/CollapsedGibbsSampler.cpp.o
-[ 83%] Building CXX object src/CMakeFiles/salmon.dir/WhiteList.cpp.o
-[ 83%] Building CXX object src/CMakeFiles/salmon.dir/Alevin.cpp.o
-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/DedupUMI.cpp.o -MF CMakeFiles/salmon.dir/DedupUMI.cpp.o.d -o CMakeFiles/salmon.dir/DedupUMI.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp
-[ 84%] Building CXX object src/CMakeFiles/salmon.dir/CollapsedCellOptimizer.cpp.o
-[ 84%] Building CXX object src/CMakeFiles/salmon.dir/CollapsedEMOptimizer.cpp.o
+[ 79%] Building CXX object src/CMakeFiles/salmon.dir/CollapsedEMOptimizer.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/CollapsedEMOptimizer.cpp.o -MF CMakeFiles/salmon.dir/CollapsedEMOptimizer.cpp.o.d -o CMakeFiles/salmon.dir/CollapsedEMOptimizer.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedEMOptimizer.cpp
+[ 80%] Building CXX object src/CMakeFiles/salmon.dir/EMUtils.cpp.o
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/EMUtils.cpp.o -MF CMakeFiles/salmon.dir/EMUtils.cpp.o.d -o CMakeFiles/salmon.dir/EMUtils.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/EMUtils.cpp
-[ 85%] Building CXX object src/CMakeFiles/salmon.dir/Graph.cpp.o
-[ 86%] Building CXX object src/CMakeFiles/salmon.dir/SalmonAlevin.cpp.o
-[ 86%] Building CXX object src/CMakeFiles/salmon.dir/Salmon.cpp.o
+[ 81%] Building CXX object src/CMakeFiles/salmon.dir/CollapsedGibbsSampler.cpp.o
+[ 82%] Building CXX object src/CMakeFiles/salmon.dir/Salmon.cpp.o
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-[ 87%] Building CXX object src/CMakeFiles/salmon.dir/BuildSalmonIndex.cpp.o
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-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/WhiteList.cpp.o -MF CMakeFiles/salmon.dir/WhiteList.cpp.o.d -o CMakeFiles/salmon.dir/WhiteList.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/WhiteList.cpp
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-[ 94%] Building CXX object src/CMakeFiles/salmon.dir/FASTAParser.cpp.o
-[ 94%] Building CXX object src/CMakeFiles/salmon.dir/ONTAlignmentModel.cpp.o
+[ 89%] Building CXX object src/CMakeFiles/salmon.dir/SalmonAlevin.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/SalmonAlevin.cpp.o -MF CMakeFiles/salmon.dir/SalmonAlevin.cpp.o.d -o CMakeFiles/salmon.dir/SalmonAlevin.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp
+[ 90%] Building CXX object src/CMakeFiles/salmon.dir/AlevinHash.cpp.o
+[ 91%] Building CXX object src/CMakeFiles/salmon.dir/FragmentStartPositionDistribution.cpp.o
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-[ 97%] Building CXX object src/CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o
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-cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/BAMUtils.cpp.o -MF CMakeFiles/salmon.dir/BAMUtils.cpp.o.d -o CMakeFiles/salmon.dir/BAMUtils.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/BAMUtils.cpp
+[ 95%] Building CXX object src/CMakeFiles/salmon.dir/ProgramOptionsGenerator.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/ProgramOptionsGenerator.cpp.o -MF CMakeFiles/salmon.dir/ProgramOptionsGenerator.cpp.o.d -o CMakeFiles/salmon.dir/ProgramOptionsGenerator.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/ProgramOptionsGenerator.cpp
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/pcg_random.hpp:104,
                  from /build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedGibbsSampler.cpp:22:
 /build/reproducible-path/salmon-1.10.2+ds1/include/pcg_extras.hpp:563:51: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
@@ -3272,6 +3300,8 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/pcg_extras.hpp:563:60: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
   563 |       fnv(IntType(2166136261U ^ sizeof(IntType)), __DATE__ __TIME__ __FILE__);
       |                                                            ^~~~~~~~
+[ 96%] Building CXX object src/CMakeFiles/salmon.dir/ONTAlignmentModel.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/ONTAlignmentModel.cpp.o -MF CMakeFiles/salmon.dir/ONTAlignmentModel.cpp.o.d -o CMakeFiles/salmon.dir/ONTAlignmentModel.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinOpts.hpp:5,
@@ -3288,9 +3318,7 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ProgramOptionsGenerator.hpp:5,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/ProgramOptionsGenerator.cpp:4:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantMerge.cpp:29:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3301,8 +3329,8 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentCommon.hpp:10,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/AlignmentCommon.cpp:1:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/FASTAParser.cpp:11:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3313,9 +3341,8 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentCommon.hpp:10,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentModel.hpp:6,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/AlignmentModel.cpp:8:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinHash.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/AlevinHash.cpp:1:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3326,7 +3353,9 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantMerge.cpp:29:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ProgramOptionsGenerator.hpp:5,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/ProgramOptionsGenerator.cpp:4:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3337,8 +3366,9 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/FASTAParser.cpp:11:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentCommon.hpp:10,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentModel.hpp:6,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/AlignmentModel.cpp:8:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3349,9 +3379,8 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:27,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:8,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/Graph.cpp:1:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonIndex.hpp:11,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/BuildSalmonIndex.cpp:34:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3366,19 +3395,7 @@
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadPair.hpp:6,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentGroup.hpp:15,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/GZipWriter.cpp:9:
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonIndex.hpp:11,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/BuildSalmonIndex.cpp:34:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedEMOptimizer.cpp:22:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3389,8 +3406,11 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinHash.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/AlevinHash.cpp:1:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadPair.hpp:6,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentGroup.hpp:15,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/GZipWriter.cpp:9:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3401,10 +3421,7 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:27,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:8,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/DedupUMI.hpp:4,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:1:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:48:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3415,8 +3432,8 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ONTAlignmentModel.hpp:9,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:11:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonIndex.hpp:11,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/Salmon.cpp:49:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3427,8 +3444,9 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonIndex.hpp:11,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/Salmon.cpp:49:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:27,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:8,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/Graph.cpp:1:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3454,18 +3472,10 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:48:
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  197 |     registry_t<Mutex>() {}
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
-  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
-      |                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantify.cpp:75:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:27,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:8,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/DedupUMI.hpp:4,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:1:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3476,11 +3486,9 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadPair.hpp:6,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentGroup.hpp:15,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedEMOptimizer.cpp:22:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonUtils.hpp:30,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/FragmentLengthDistribution.cpp:12:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3491,9 +3499,8 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonUtils.hpp:30,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/FragmentLengthDistribution.cpp:12:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ONTAlignmentModel.hpp:9,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:11:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3508,7 +3515,7 @@
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadPair.hpp:6,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentGroup.hpp:15,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantifyAlignments.cpp:33:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedGibbsSampler.cpp:30:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3517,6 +3524,10 @@
   198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
       |                      ^
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 97%] Building CXX object src/CMakeFiles/salmon.dir/AlignmentCommon.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/AlignmentCommon.cpp.o -MF CMakeFiles/salmon.dir/AlignmentCommon.cpp.o.d -o CMakeFiles/salmon.dir/AlignmentCommon.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/AlignmentCommon.cpp
+[ 98%] Building CXX object src/CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o -MF CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o.d -o CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantifyAlignments.cpp
 /build/reproducible-path/salmon-1.10.2+ds1/src/AlignmentModel.cpp: In member function 'AlignmentModel::AlnModelProb AlignmentModel::logLikelihood(bam_seq_t*, bam_seq_t*, Transcript&, std::vector<AtomicMatrix<double> >&)':
 /build/reproducible-path/salmon-1.10.2+ds1/src/AlignmentModel.cpp:96:33: warning: unused parameter 'primary' [-Wunused-parameter]
    96 |     bam_seq_t* read, bam_seq_t* primary, Transcript& ref,
@@ -3531,11 +3542,13 @@
       |                                                  ~~~~~~~~~~~~~~~~^~~~~~~
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/Util.hpp:19,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadPair.hpp:6,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentGroup.hpp:15,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:12,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedGibbsSampler.cpp:30:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonUtils.hpp:30,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Transcript.hpp:8,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ClusterForest.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadExperiment.hpp:5,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/CollapsedCellOptimizer.hpp:11,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:5:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3546,13 +3559,7 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
                  from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonOpts.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonUtils.hpp:30,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Transcript.hpp:8,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ClusterForest.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadExperiment.hpp:5,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/CollapsedCellOptimizer.hpp:11,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:5:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantify.cpp:75:
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
   197 |     registry_t<Mutex>() {}
       |                      ^
@@ -3572,6 +3579,153 @@
   198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
       |                      ^
 /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+[ 99%] Building CXX object src/CMakeFiles/salmon.dir/BAMUtils.cpp.o
+cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DHAVE_ANSI_TERM=1 -DHAVE_SSTREAM=1 -DPUFFERFISH_SALMON_SUPPORT=1 -DRAPMAP_SALMON_SUPPORT=1 -DSTX_NO_STD_STRING_VIEW=1 -Dspan_FEATURE_MAKE_SPAN_TO_STD=14 -I/build/reproducible-path/salmon-1.10.2+ds1/include -I/usr/include/eigen3 -I/build/reproducible-path/salmon-1.10.2+ds1/external -I/build/reproducible-path/salmon-1.10.2+ds1/external/cereal/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish -I/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/digestpp -I/build/reproducible-path/salmon-1.10.2+ds1/external/pufferfish/external/twopaco/graphdump -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=c++14 -flto=auto -fno-fat-lto-objects -DHAVE_KALLOC -W -Wall -Wextra -Wpointer-arith -Wunused -Wwrite-strings -Wno-unknown-pragmas -Wno-unused-function -Wno-reorder -DPUFFERFISH_SALMON_SUPPORT -DHAVE_NUMERIC_LIMITS128 -DHAVE_SIMDE -D__STDC_FORMAT_MACROS -DSTX_NO_STD_STRING_VIEW -O3 -fPIC -DNDEBUG -funroll-loops -ftree-vectorize -fno-strict-aliasing -fomit-frame-pointer -static-libstdc++ -Wno-unused-variable -Wreturn-type -Werror=return-type -Wno-unused-local-typedefs -Wno-int-in-bool-context -Wno-deprecated-copy -MD -MT src/CMakeFiles/salmon.dir/BAMUtils.cpp.o -MF CMakeFiles/salmon.dir/BAMUtils.cpp.o.d -o CMakeFiles/salmon.dir/BAMUtils.cpp.o -c /build/reproducible-path/salmon-1.10.2+ds1/src/BAMUtils.cpp
+/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp: In constructor 'ONTAlignmentModel::ONTAlignmentModel(double, uint32_t)':
+/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:17:45: warning: unused parameter 'alpha' [-Wunused-parameter]
+   17 | ONTAlignmentModel::ONTAlignmentModel(double alpha, uint32_t readBins)
+      |                                      ~~~~~~~^~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp: In member function 'double ONTAlignmentModel::logLikelihood(const UnpairedRead&, const UnpairedRead&, Transcript&)':
+/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:53:22: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'const uint32_t' {aka 'const unsigned int'} [-Wsign-compare]
+   53 |   if(counts.sclips() >= cigarRLen)
+      |      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp: In member function 'void ONTAlignmentModel::update(const UnpairedRead&, const UnpairedRead&, Transcript&, double, double)':
+/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:137:56: warning: unused parameter 'p' [-Wunused-parameter]
+  137 |                                Transcript& ref, double p, double mass) {
+      |                                                 ~~~~~~~^
+/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp: In member function 'void ONTAlignmentModel::printModel(std::ostream&)':
+/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:194:50: warning: unused parameter 'os' [-Wunused-parameter]
+  194 | void ONTAlignmentModel::printModel(std::ostream& os) {
+      |                                    ~~~~~~~~~~~~~~^~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentCommon.hpp:10,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/AlignmentCommon.cpp:1:
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                         ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                         ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mutable_value_type = std::pair<long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+ 1390 |         _init_val((mutable_pointer)(_group + offset), val);
+      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:60:
+/build/reproducible-path/salmon-1.10.2+ds1/include/BarcodeModel.hpp: In function 'void alevin::model::coinTossBarcodeModel(std::string, const std::vector<std::__cxx11::basic_string<char> >&, MapT&)':
+/build/reproducible-path/salmon-1.10.2+ds1/include/BarcodeModel.hpp:168:31: warning: loop variable 'trueBarcode' creates a copy from type 'const std::string' {aka 'const std::__cxx11::basic_string<char>'} [-Wrange-loop-construct]
+  168 |         for(const std::string trueBarcode: trueBarcodes){
+      |                               ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/BarcodeModel.hpp:168:31: note: use reference type to prevent copying
+  168 |         for(const std::string trueBarcode: trueBarcodes){
+      |                               ^~~~~~~~~~~
+      |                               &
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
@@ -3722,48 +3876,8 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::pair<unsigned int, unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::pair<unsigned int, unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::pair<unsigned int, unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp: In constructor 'ONTAlignmentModel::ONTAlignmentModel(double, uint32_t)':
-/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:17:45: warning: unused parameter 'alpha' [-Wunused-parameter]
-   17 | ONTAlignmentModel::ONTAlignmentModel(double alpha, uint32_t readBins)
-      |                                      ~~~~~~~^~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp: In member function 'double ONTAlignmentModel::logLikelihood(const UnpairedRead&, const UnpairedRead&, Transcript&)':
-/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:53:22: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'const uint32_t' {aka 'const unsigned int'} [-Wsign-compare]
-   53 |   if(counts.sclips() >= cigarRLen)
-      |      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp: In member function 'void ONTAlignmentModel::update(const UnpairedRead&, const UnpairedRead&, Transcript&, double, double)':
-/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:137:56: warning: unused parameter 'p' [-Wunused-parameter]
-  137 |                                Transcript& ref, double p, double mass) {
-      |                                                 ~~~~~~~^
-/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp: In member function 'void ONTAlignmentModel::printModel(std::ostream&)':
-/build/reproducible-path/salmon-1.10.2+ds1/src/ONTAlignmentModel.cpp:194:50: warning: unused parameter 'os' [-Wunused-parameter]
-  194 | void ONTAlignmentModel::printModel(std::ostream& os) {
-      |                                    ~~~~~~~~~~~~~~^~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47:
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
-   28 |         edges[source].insert(sink);
-      |                     ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -3814,159 +3928,6 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; value_type = std::pair<const unsigned int, std::vector<unsigned int> >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; pointer = std::pair<const unsigned int, std::vector<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, std::vector<unsigned int> >; Value = std::pair<const unsigned int, std::vector<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, std::vector<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; value_type = std::pair<const unsigned int, std::vector<unsigned int> >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = std::vector<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; mapped_type = std::vector<unsigned int>]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:32:17:   required from here
-   32 |       tidMap[txp].emplace_back(eqId);
-      |                 ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, std::vector<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, std::vector<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, std::vector<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, std::vector<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = std::vector<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = std::vector<unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; value_type = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; pointer = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Value = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; value_type = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >; HashFcn = boost::hash<std::vector<unsigned int> >; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; mapped_type = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:285:29:   required from here
-  285 |         eqclassHash[genesVec].first += 1;
-      |                             ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >, spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >, spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; value_type = std::pair<const short unsigned int, short unsigned int>; reference = std::pair<const short unsigned int, short unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; pointer = std::pair<const short unsigned int, short unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; reference = std::pair<const short unsigned int, short unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const short unsigned int, short unsigned int>; Value = std::pair<const short unsigned int, short unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; reference = std::pair<const short unsigned int, short unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<short unsigned int, short unsigned int>::DefaultValue; KT = short unsigned int&; Value = std::pair<const short unsigned int, short unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; value_type = std::pair<const short unsigned int, short unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = short unsigned int&; Key = short unsigned int; T = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; mapped_type = short unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:286:47:   required from here
-  286 |         eqclassHash[genesVec].second[readspmol] += 1;
-      |                                               ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const short unsigned int, short unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> > >::value_type' {aka 'std::pair<const short unsigned int, short unsigned int>'} to 'spp::sparsegroup<std::pair<const short unsigned int, short unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> > >::mutable_reference' {aka 'std::pair<short unsigned int, short unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const short unsigned int; _U2 = short unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = short unsigned int; _T2 = short unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>; reference = std::pair<const std::vector<unsigned int>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; pointer = std::pair<const std::vector<unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = boost::hash<std::vector<unsigned int> >; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:413:29:   required from here
-  413 |         eqclassHash[genesVec] += 1;
-      |                             ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; value_type = std::pair<const unsigned int, unsigned int>; reference = std::pair<const unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; pointer = std::pair<const unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; reference = std::pair<const unsigned int, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, unsigned int>; Value = std::pair<const unsigned int, unsigned int>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; reference = std::pair<const unsigned int, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, unsigned int>::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, unsigned int>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; value_type = std::pair<const unsigned int, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = unsigned int; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:477:29:   required from here
-  477 |           vertexIndices[gene] = gid;
-      |                             ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
-   28 |         edges[source].insert(sink);
-      |                     ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
  1407 |             _init_val((mutable_pointer)&_group[num_items], val);
@@ -4023,36 +3984,470 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; mutable_value_type = std::pair<unsigned int, std::vector<unsigned int> >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; pointer = std::pair<const unsigned int, std::vector<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, std::vector<unsigned int> >; Value = std::pair<const unsigned int, std::vector<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, std::vector<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; value_type = std::pair<const unsigned int, std::vector<unsigned int> >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = std::vector<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; mapped_type = std::vector<unsigned int>]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:32:17:   required from here
-   32 |       tidMap[txp].emplace_back(eqId);
-      |                 ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, std::vector<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, std::vector<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, std::vector<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, std::vector<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = std::vector<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = std::vector<unsigned int>]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::DropSeq; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::DropSeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::DropSeq; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1084:23:   required from here
+ 1084 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1085 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1086 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::InDropV2; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::InDropV2; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::InDropV2; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1094:25:   required from here
+ 1094 |         initiatePipeline(aopt, sopt, orderedOptions,
+      |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1095 |                          vm, commentString, noTgMap,
+      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1096 |                          barcodeFiles, readFiles, salmonIndex);
+      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::CITESeq; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::CITESeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::CITESeq; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1110:25:   required from here
+ 1110 |         initiatePipeline(aopt, sopt, orderedOptions,
+      |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1111 |                          vm, commentString, noTgMap,
+      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1112 |                          barcodeFiles, readFiles, salmonIndex);
+      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::ChromiumV3; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::ChromiumV3; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::ChromiumV3; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1122:23:   required from here
+ 1122 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1123 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1124 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::Chromium; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::Chromium; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::Chromium; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1129:23:   required from here
+ 1129 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1130 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1131 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::Gemcode; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::Gemcode; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::Gemcode; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1136:23:   required from here
+ 1136 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1137 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1138 |                        unmateFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::CELSeq; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::CELSeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::CELSeq; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1143:23:   required from here
+ 1143 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1144 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1145 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::CELSeq2; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::CELSeq2; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::CELSeq2; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1150:23:   required from here
+ 1150 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1151 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1152 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::SplitSeqV1; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::SplitSeqV1; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::SplitSeqV1; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1157:23:   required from here
+ 1157 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1158 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1159 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::SplitSeqV2; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::SplitSeqV2; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::SplitSeqV2; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1164:23:   required from here
+ 1164 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1165 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1166 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::QuartzSeq2; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::QuartzSeq2; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::QuartzSeq2; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1171:23:   required from here
+ 1171 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1172 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1173 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::SciSeq3; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::SciSeq3; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::SciSeq3; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1177:23:   required from here
+ 1177 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1178 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1179 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::Custom; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::Custom; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::Custom; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1183:23:   required from here
+ 1183 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1184 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1185 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::CustomGeometry; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::CustomGeometry; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
+      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::CustomGeometry; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
+  938 |     processBarcodes(barcodeFiles,
+      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
+  939 |                     readFiles,
+      |                     ~~~~~~~~~~
+  940 |                     aopt,
+      |                     ~~~~~
+  941 |                     barcodeSoftMap,
+      |                     ~~~~~~~~~~~~~~~
+  942 |                     trueBarcodes,
+      |                     ~~~~~~~~~~~~~
+  943 |                     freqCounter,
+      |                     ~~~~~~~~~~~~
+  944 |                     numLowConfidentBarcode);
+      |                     ~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1189:23:   required from here
+ 1189 |       initiatePipeline(aopt, sopt, orderedOptions,
+      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1190 |                        vm, commentString, noTgMap,
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
+ 1191 |                        barcodeFiles, readFiles, salmonIndex);
+      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
+  488 |   for (const auto trueBarcode: trueBarcodes){
+      |                   ^~~~~~~~~~~
+      |                   &
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinHash.hpp:10:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -4103,191 +4498,48 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; mutable_value_type = std::pair<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; pointer = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Value = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; value_type = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >; HashFcn = boost::hash<std::vector<unsigned int> >; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; mapped_type = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:285:29:   required from here
-  285 |         eqclassHash[genesVec].first += 1;
-      |                             ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >, spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >, spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; mutable_value_type = std::pair<short unsigned int, short unsigned int>; reference = std::pair<const short unsigned int, short unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
- 1390 |         _init_val((mutable_pointer)(_group + offset), val);
-      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; pointer = std::pair<const short unsigned int, short unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; reference = std::pair<const short unsigned int, short unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const short unsigned int, short unsigned int>; Value = std::pair<const short unsigned int, short unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; reference = std::pair<const short unsigned int, short unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<short unsigned int, short unsigned int>::DefaultValue; KT = short unsigned int&; Value = std::pair<const short unsigned int, short unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; value_type = std::pair<const short unsigned int, short unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = short unsigned int&; Key = short unsigned int; T = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; mapped_type = short unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:286:47:   required from here
-  286 |         eqclassHash[genesVec].second[readspmol] += 1;
-      |                                               ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const short unsigned int, short unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> > >::value_type' {aka 'std::pair<const short unsigned int, short unsigned int>'} to 'spp::sparsegroup<std::pair<const short unsigned int, short unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> > >::mutable_reference' {aka 'std::pair<short unsigned int, short unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const short unsigned int; _U2 = short unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = short unsigned int; _T2 = short unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mutable_value_type = std::pair<std::vector<unsigned int>, unsigned int>; reference = std::pair<const std::vector<unsigned int>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; pointer = std::pair<const std::vector<unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = boost::hash<std::vector<unsigned int> >; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:413:29:   required from here
-  413 |         eqclassHash[genesVec] += 1;
-      |                             ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; mutable_value_type = std::pair<unsigned int, unsigned int>; reference = std::pair<const unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
- 1390 |         _init_val((mutable_pointer)(_group + offset), val);
-      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; pointer = std::pair<const unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; reference = std::pair<const unsigned int, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, unsigned int>; Value = std::pair<const unsigned int, unsigned int>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; reference = std::pair<const unsigned int, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, unsigned int>::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, unsigned int>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; value_type = std::pair<const unsigned int, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = unsigned int; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:477:29:   required from here
-  477 |           vertexIndices[gene] = gid;
-      |                             ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:60:
-/build/reproducible-path/salmon-1.10.2+ds1/include/BarcodeModel.hpp: In function 'void alevin::model::coinTossBarcodeModel(std::string, const std::vector<std::__cxx11::basic_string<char> >&, MapT&)':
-/build/reproducible-path/salmon-1.10.2+ds1/include/BarcodeModel.hpp:168:31: warning: loop variable 'trueBarcode' creates a copy from type 'const std::string' {aka 'const std::__cxx11::basic_string<char>'} [-Wrange-loop-construct]
-  168 |         for(const std::string trueBarcode: trueBarcodes){
-      |                               ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/BarcodeModel.hpp:168:31: note: use reference type to prevent copying
-  168 |         for(const std::string trueBarcode: trueBarcodes){
-      |                               ^~~~~~~~~~~
-      |                               &
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/spdlog_impl.h:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/spdlog.h:192,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/Util.hpp:19,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadPair.hpp:6,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentGroup.hpp:15,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:12,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantifyAlignments.cpp:33:
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  197 |     registry_t<Mutex>() {}
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:197:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor]
+  198 |     registry_t<Mutex>(const registry_t<Mutex>&) = delete;
+      |                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/include/spdlog/details/../details/registry.h:198:22: note: remove the '< >'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; value_type = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; pointer = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2251:27:   required from 'void spp::sparsetable<T, Alloc>::move(size_type, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]'
- 2251 |         which_group(i).set(_alloc, pos_in_group(i), val);
-      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2830:23:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2830 |             table.move(bucknum, *it);    // moves the value to here
-      |             ~~~~~~~~~~^~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2948 |         _move_from(mover, ht, min_buckets_wanted);
-      |         ^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2680:30:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_maybe_shrink() [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >]'
- 2680 |             sparse_hashtable tmp(MoveDontCopy, *this, sz);
-      |                              ^~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2846:13:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::resize(size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2846 |             _maybe_shrink();
-      |             ^~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3799:51:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::resize(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 3799 |     void resize(size_type cnt)        { rep.resize(cnt); }
-      |                                         ~~~~~~~~~~^~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3801:41:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::reserve(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 3801 |     void reserve(size_type cnt)       { resize(cnt); } // c++11
-      |                                         ^~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:39:25:   required from here
-   39 |   vertexIndexMap.reserve(numClasses);
-      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::pair<unsigned int, unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::pair<unsigned int, unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::pair<unsigned int, unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
+/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
+   28 |         edges[source].insert(sink);
+      |                     ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinHash.hpp:10:
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadExperiment.hpp:7:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -4313,173 +4565,6 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mutable_value_type = std::pair<long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
- 1390 |         _init_val((mutable_pointer)(_group + offset), val);
-      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:65:
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp_utils.h: In instantiation of 'T* spp::libc_allocator<T>::reallocate(pointer, size_t) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; pointer = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>*; size_t = long unsigned int]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1383:38:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
- 1383 |             _group = alloc.reallocate(_group, num_alloc);
-      |                      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; pointer = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2251:27:   required from 'void spp::sparsetable<T, Alloc>::move(size_type, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]'
- 2251 |         which_group(i).set(_alloc, pos_in_group(i), val);
-      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2830:23:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2830 |             table.move(bucknum, *it);    // moves the value to here
-      |             ~~~~~~~~~~^~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2948 |         _move_from(mover, ht, min_buckets_wanted);
-      |         ^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2680:30:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_maybe_shrink() [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >]'
- 2680 |             sparse_hashtable tmp(MoveDontCopy, *this, sz);
-      |                              ^~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2846:13:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::resize(size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2846 |             _maybe_shrink();
-      |             ^~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3799:51:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::resize(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 3799 |     void resize(size_type cnt)        { rep.resize(cnt); }
-      |                                         ~~~~~~~~~~^~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3801:41:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::reserve(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 3801 |     void reserve(size_type cnt)       { resize(cnt); } // c++11
-      |                                         ^~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:39:25:   required from here
-   39 |   vertexIndexMap.reserve(numClasses);
-      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp_utils.h:425:51: warning: 'void* realloc(void*, size_t)' moving an object of non-trivially copyable type 'struct std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>'; use 'new' and 'delete' instead [-Wclass-memaccess]
-  425 |         pointer res = static_cast<pointer>(realloc(p, new_size * sizeof(T)));
-      |                                            ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
-                 from /usr/include/c++/14/string:51,
-                 from /usr/include/c++/14/bits/locale_classes.h:40,
-                 from /usr/include/c++/14/bits/ios_base.h:41,
-                 from /usr/include/c++/14/streambuf:43,
-                 from /usr/include/c++/14/bits/streambuf_iterator.h:35,
-                 from /usr/include/c++/14/iterator:66,
-                 from /usr/include/boost/graph/graph_traits.hpp:14,
-                 from /usr/include/boost/graph/depth_first_search.hpp:17,
-                 from /usr/include/boost/graph/connected_components.hpp:15,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:4:
-/usr/include/c++/14/bits/stl_pair.h:284:12: note: 'struct std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>' declared here
-  284 |     struct pair
-      |            ^~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; mutable_value_type = std::pair<std::pair<unsigned int, unsigned int>, unsigned int>; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
- 1390 |         _init_val((mutable_pointer)(_group + offset), val);
-      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; pointer = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2251:27:   required from 'void spp::sparsetable<T, Alloc>::move(size_type, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]'
- 2251 |         which_group(i).set(_alloc, pos_in_group(i), val);
-      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2830:23:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2830 |             table.move(bucknum, *it);    // moves the value to here
-      |             ~~~~~~~~~~^~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2948 |         _move_from(mover, ht, min_buckets_wanted);
-      |         ^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2680:30:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_maybe_shrink() [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >]'
- 2680 |             sparse_hashtable tmp(MoveDontCopy, *this, sz);
-      |                              ^~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2846:13:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::resize(size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 2846 |             _maybe_shrink();
-      |             ^~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3799:51:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::resize(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 3799 |     void resize(size_type cnt)        { rep.resize(cnt); }
-      |                                         ~~~~~~~~~~^~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3801:41:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::reserve(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
- 3801 |     void reserve(size_type cnt)       { resize(cnt); } // c++11
-      |                                         ^~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:39:25:   required from here
-   39 |   vertexIndexMap.reserve(numClasses);
-      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::pair<unsigned int, unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::pair<unsigned int, unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::pair<unsigned int, unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
-   28 |         edges[source].insert(sink);
-      |                     ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -4555,6 +4640,31 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, long unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, long unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, long unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, long unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, long unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, long unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = long unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = long unsigned int]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, long unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, long unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, long unsigned int> >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -4580,6 +4690,58 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, long unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, long unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, long unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, long unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, long unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, long unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = long unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = long unsigned int]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                         ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
  1407 |             _init_val((mutable_pointer)&_group[num_items], val);
@@ -4636,8 +4798,37 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
+   28 |         edges[source].insert(sink);
+      |                     ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinHash.hpp:10,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:58:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -4688,34 +4879,6 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
-   28 |         edges[source].insert(sink);
-      |                     ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mutable_value_type = std::pair<std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
  1407 |             _init_val((mutable_pointer)&_group[num_items], val);
@@ -4800,6 +4963,31 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, long unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, long unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, long unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, long unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, long unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, long unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = long unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = long unsigned int]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
+   28 |         edges[source].insert(sink);
+      |                     ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, long unsigned int> >; mutable_value_type = std::pair<std::__cxx11::basic_string<char>, long unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, long unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, long unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, long unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
  1407 |             _init_val((mutable_pointer)&_group[num_items], val);
@@ -4853,6 +5041,56 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; value_type = std::pair<const short unsigned int, unsigned int>; reference = std::pair<const short unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; pointer = std::pair<const short unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; reference = std::pair<const short unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const short unsigned int, unsigned int>; Value = std::pair<const short unsigned int, unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; reference = std::pair<const short unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<short unsigned int, unsigned int>::DefaultValue; KT = const short unsigned int&; Value = std::pair<const short unsigned int, unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; value_type = std::pair<const short unsigned int, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = const short unsigned int&; Key = short unsigned int; T = unsigned int; HashFcn = spp::spp_hash<short unsigned int>; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:747:45:   required from here
+  747 |                 arboFragCounts[gid][it.first] += it.second;
+      |                                             ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const short unsigned int, unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const short unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const short unsigned int, unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<short unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const short unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = short unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
+   28 |         edges[source].insert(sink);
+      |                     ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
  1407 |             _init_val((mutable_pointer)&_group[num_items], val);
@@ -4937,12 +5175,13 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
@@ -4961,13 +5200,16 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
    51 |     barcodeGroup[barcode][umi] = 1;
       |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mutable_value_type = std::pair<long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+ 1390 |         _init_val((mutable_pointer)(_group + offset), val);
+      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
@@ -4986,69 +5228,131 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
    51 |     barcodeGroup[barcode][umi] = 1;
       |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadExperiment.hpp:7:
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; mutable_value_type = std::pair<short unsigned int, unsigned int>; reference = std::pair<const short unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+ 1390 |         _init_val((mutable_pointer)(_group + offset), val);
+      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; pointer = std::pair<const short unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; reference = std::pair<const short unsigned int, unsigned int>&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const short unsigned int, unsigned int>; Value = std::pair<const short unsigned int, unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; reference = std::pair<const short unsigned int, unsigned int>&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<short unsigned int, unsigned int>::DefaultValue; KT = const short unsigned int&; Value = std::pair<const short unsigned int, unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; value_type = std::pair<const short unsigned int, unsigned int>]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = const short unsigned int&; Key = short unsigned int; T = unsigned int; HashFcn = spp::spp_hash<short unsigned int>; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; mapped_type = unsigned int]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:747:45:   required from here
+  747 |                 arboFragCounts[gid][it.first] += it.second;
+      |                                             ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const short unsigned int, unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const short unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const short unsigned int, unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<short unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const short unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = short unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
       |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; pointer = std::pair<const std::__cxx11::basic_string<char>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::DefaultValue; KT = std::__cxx11::basic_string<char>&; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::__cxx11::basic_string<char>&; Key = std::__cxx11::basic_string<char>; T = unsigned int; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mapped_type = unsigned int]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:1087:29:   required from 'bool CollapsedCellOptimizer::optimize(EqMapT&, spp::sparse_hash_map<unsigned int, unsigned int>&, spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>&, AlevinOpts<ProtocolT>&, GZipWriter&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<unsigned int>&, CFreqMapT&, size_t) [with ProtocolT = alevin::protocols::DropSeq; EqMapT = libcuckoo::cuckoohash_map<TranscriptGroup, SCTGValue, TranscriptGroupHasher, std::equal_to<TranscriptGroup>, std::allocator<std::pair<const TranscriptGroup, SCTGValue> >, 4>; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+ 1087 |             mRnaGenes.insert(geneIdxMap[ gene ]);
+      |             ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:1426:68:   required from here
+ 1426 |                                       size_t numLowConfidentBarcode);
+      |                                                                    ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = unsigned int]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadExperiment.hpp:7,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonMappingUtils.hpp:44,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantify.cpp:93:
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
+   28 |         edges[source].insert(sink);
+      |                     ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mutable_value_type = std::pair<std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; pointer = std::pair<const std::__cxx11::basic_string<char>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::DefaultValue; KT = std::__cxx11::basic_string<char>&; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::__cxx11::basic_string<char>&; Key = std::__cxx11::basic_string<char>; T = unsigned int; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:1087:29:   required from 'bool CollapsedCellOptimizer::optimize(EqMapT&, spp::sparse_hash_map<unsigned int, unsigned int>&, spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>&, AlevinOpts<ProtocolT>&, GZipWriter&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<unsigned int>&, CFreqMapT&, size_t) [with ProtocolT = alevin::protocols::DropSeq; EqMapT = libcuckoo::cuckoohash_map<TranscriptGroup, SCTGValue, TranscriptGroupHasher, std::equal_to<TranscriptGroup>, std::allocator<std::pair<const TranscriptGroup, SCTGValue> >, 4>; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+ 1087 |             mRnaGenes.insert(geneIdxMap[ gene ]);
+      |             ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:1426:68:   required from here
+ 1426 |                                       size_t numLowConfidentBarcode);
+      |                                                                    ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
@@ -5067,13 +5371,16 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
    51 |     barcodeGroup[barcode][umi] = 1;
       |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mutable_value_type = std::pair<long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+ 1390 |         _init_val((mutable_pointer)(_group + offset), val);
+      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
@@ -5092,13 +5399,16 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
    51 |     barcodeGroup[barcode][umi] = 1;
       |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
@@ -5117,9 +5427,10 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
    28 |         edges[source].insert(sink);
       |                     ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -5145,13 +5456,10 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
@@ -5170,16 +5478,13 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
    51 |     barcodeGroup[barcode][umi] = 1;
       |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mutable_value_type = std::pair<long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
- 1390 |         _init_val((mutable_pointer)(_group + offset), val);
-      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
@@ -5198,146 +5503,134 @@
 /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
    51 |     barcodeGroup[barcode][umi] = 1;
       |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; value_type = std::pair<const short unsigned int, unsigned int>; reference = std::pair<const short unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; value_type = std::pair<const unsigned int, std::vector<unsigned int> >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
       |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; pointer = std::pair<const short unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; pointer = std::pair<const unsigned int, std::vector<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; reference = std::pair<const short unsigned int, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const short unsigned int, unsigned int>; Value = std::pair<const short unsigned int, unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; reference = std::pair<const short unsigned int, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, std::vector<unsigned int> >; Value = std::pair<const unsigned int, std::vector<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<short unsigned int, unsigned int>::DefaultValue; KT = const short unsigned int&; Value = std::pair<const short unsigned int, unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; value_type = std::pair<const short unsigned int, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, std::vector<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; value_type = std::pair<const unsigned int, std::vector<unsigned int> >]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = const short unsigned int&; Key = short unsigned int; T = unsigned int; HashFcn = spp::spp_hash<short unsigned int>; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; mapped_type = unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = std::vector<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; mapped_type = std::vector<unsigned int>]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:747:45:   required from here
-  747 |                 arboFragCounts[gid][it.first] += it.second;
-      |                                             ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const short unsigned int, unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const short unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const short unsigned int, unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<short unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const short unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = short unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:32:17:   required from here
+   32 |       tidMap[txp].emplace_back(eqId);
+      |                 ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, std::vector<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, std::vector<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, std::vector<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, std::vector<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = std::vector<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = std::vector<unsigned int>]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; value_type = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; pointer = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Value = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; value_type = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >; HashFcn = boost::hash<std::vector<unsigned int> >; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; mapped_type = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mutable_value_type = std::pair<long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
- 1390 |         _init_val((mutable_pointer)(_group + offset), val);
-      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:285:29:   required from here
+  285 |         eqclassHash[genesVec].first += 1;
+      |                             ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >, spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >, spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; value_type = std::pair<const short unsigned int, short unsigned int>; reference = std::pair<const short unsigned int, short unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; pointer = std::pair<const short unsigned int, short unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; reference = std::pair<const short unsigned int, short unsigned int>&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const short unsigned int, short unsigned int>; Value = std::pair<const short unsigned int, short unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; reference = std::pair<const short unsigned int, short unsigned int>&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<short unsigned int, short unsigned int>::DefaultValue; KT = short unsigned int&; Value = std::pair<const short unsigned int, short unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; value_type = std::pair<const short unsigned int, short unsigned int>]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = short unsigned int&; Key = short unsigned int; T = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; mapped_type = short unsigned int]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:286:47:   required from here
+  286 |         eqclassHash[genesVec].second[readspmol] += 1;
+      |                                               ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const short unsigned int, short unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> > >::value_type' {aka 'std::pair<const short unsigned int, short unsigned int>'} to 'spp::sparsegroup<std::pair<const short unsigned int, short unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> > >::mutable_reference' {aka 'std::pair<short unsigned int, short unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const short unsigned int; _U2 = short unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = short unsigned int; _T2 = short unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>; reference = std::pair<const std::vector<unsigned int>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; pointer = std::pair<const std::vector<unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = boost::hash<std::vector<unsigned int> >; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mutable_value_type = std::pair<long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
- 1390 |         _init_val((mutable_pointer)(_group + offset), val);
-      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:413:29:   required from here
+  413 |         eqclassHash[genesVec] += 1;
+      |                             ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; value_type = std::pair<const unsigned int, unsigned int>; reference = std::pair<const unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; pointer = std::pair<const unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; reference = std::pair<const unsigned int, unsigned int>&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, unsigned int>; Value = std::pair<const unsigned int, unsigned int>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; reference = std::pair<const unsigned int, unsigned int>&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, unsigned int>::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, unsigned int>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; value_type = std::pair<const unsigned int, unsigned int>]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = unsigned int; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; mapped_type = unsigned int]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:477:29:   required from here
+  477 |           vertexIndices[gene] = gid;
+      |                             ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
  1407 |             _init_val((mutable_pointer)&_group[num_items], val);
@@ -5366,583 +5659,62 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mutable_value_type = std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
  1407 |             _init_val((mutable_pointer)&_group[num_items], val);
       |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1435 |             _set_aux(alloc, offset, val, check_alloc_type());
       |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
-   28 |         edges[source].insert(sink);
-      |                     ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                         ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; mutable_value_type = std::pair<short unsigned int, unsigned int>; reference = std::pair<const short unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mutable_value_type = std::pair<long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
  1390 |         _init_val((mutable_pointer)(_group + offset), val);
       |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; pointer = std::pair<const short unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const short unsigned int, unsigned int>; T = std::pair<const short unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; reference = std::pair<const short unsigned int, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const short unsigned int, unsigned int>; Value = std::pair<const short unsigned int, unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; reference = std::pair<const short unsigned int, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<short unsigned int, unsigned int>::DefaultValue; KT = const short unsigned int&; Value = std::pair<const short unsigned int, unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; value_type = std::pair<const short unsigned int, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = const short unsigned int&; Key = short unsigned int; T = unsigned int; HashFcn = spp::spp_hash<short unsigned int>; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:747:45:   required from here
-  747 |                 arboFragCounts[gid][it.first] += it.second;
-      |                                             ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const short unsigned int, unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const short unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const short unsigned int, unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<short unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const short unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = short unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; pointer = std::pair<const std::__cxx11::basic_string<char>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::DefaultValue; KT = std::__cxx11::basic_string<char>&; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::__cxx11::basic_string<char>&; Key = std::__cxx11::basic_string<char>; T = unsigned int; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:1087:29:   required from 'bool CollapsedCellOptimizer::optimize(EqMapT&, spp::sparse_hash_map<unsigned int, unsigned int>&, spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>&, AlevinOpts<ProtocolT>&, GZipWriter&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<unsigned int>&, CFreqMapT&, size_t) [with ProtocolT = alevin::protocols::DropSeq; EqMapT = libcuckoo::cuckoohash_map<TranscriptGroup, SCTGValue, TranscriptGroupHasher, std::equal_to<TranscriptGroup>, std::allocator<std::pair<const TranscriptGroup, SCTGValue> >, 4>; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
- 1087 |             mRnaGenes.insert(geneIdxMap[ gene ]);
-      |             ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:1426:68:   required from here
- 1426 |                                       size_t numLowConfidentBarcode);
-      |                                                                    ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::DropSeq; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::DropSeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::DropSeq; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1084:23:   required from here
- 1084 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1085 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1086 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::InDropV2; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::InDropV2; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::InDropV2; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1094:25:   required from here
- 1094 |         initiatePipeline(aopt, sopt, orderedOptions,
-      |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1095 |                          vm, commentString, noTgMap,
-      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1096 |                          barcodeFiles, readFiles, salmonIndex);
-      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::CITESeq; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::CITESeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::CITESeq; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1110:25:   required from here
- 1110 |         initiatePipeline(aopt, sopt, orderedOptions,
-      |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1111 |                          vm, commentString, noTgMap,
-      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1112 |                          barcodeFiles, readFiles, salmonIndex);
-      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::ChromiumV3; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::ChromiumV3; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::ChromiumV3; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1122:23:   required from here
- 1122 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1123 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1124 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::Chromium; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::Chromium; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::Chromium; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1129:23:   required from here
- 1129 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1130 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1131 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::Gemcode; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::Gemcode; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::Gemcode; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1136:23:   required from here
- 1136 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1137 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1138 |                        unmateFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::CELSeq; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::CELSeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::CELSeq; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1143:23:   required from here
- 1143 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1144 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1145 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::CELSeq2; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::CELSeq2; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::CELSeq2; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1150:23:   required from here
- 1150 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1151 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1152 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::SplitSeqV1; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::SplitSeqV1; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::SplitSeqV1; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1157:23:   required from here
- 1157 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1158 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1159 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::SplitSeqV2; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::SplitSeqV2; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::SplitSeqV2; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1164:23:   required from here
- 1164 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1165 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1166 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::QuartzSeq2; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::QuartzSeq2; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::QuartzSeq2; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1171:23:   required from here
- 1171 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1172 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1173 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::SciSeq3; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::SciSeq3; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::SciSeq3; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1177:23:   required from here
- 1177 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1178 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1179 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mutable_value_type = std::pair<std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
  1435 |             _set_aux(alloc, offset, val, check_alloc_type());
       |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; pointer = std::pair<const std::__cxx11::basic_string<char>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
  2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
       |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
  3170 |         return table.set(pos, obj);
       |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::DefaultValue; KT = std::__cxx11::basic_string<char>&; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
  3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
       |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::__cxx11::basic_string<char>&; Key = std::__cxx11::basic_string<char>; T = unsigned int; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mapped_type = unsigned int]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
  3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
       |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:1087:29:   required from 'bool CollapsedCellOptimizer::optimize(EqMapT&, spp::sparse_hash_map<unsigned int, unsigned int>&, spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>&, AlevinOpts<ProtocolT>&, GZipWriter&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<unsigned int>&, CFreqMapT&, size_t) [with ProtocolT = alevin::protocols::DropSeq; EqMapT = libcuckoo::cuckoohash_map<TranscriptGroup, SCTGValue, TranscriptGroupHasher, std::equal_to<TranscriptGroup>, std::allocator<std::pair<const TranscriptGroup, SCTGValue> >, 4>; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
- 1087 |             mRnaGenes.insert(geneIdxMap[ gene ]);
-      |             ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/CollapsedCellOptimizer.cpp:1426:68:   required from here
- 1426 |                                       size_t numLowConfidentBarcode);
-      |                                                                    ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = unsigned int]' [-Wcast-user-defined]
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::Custom; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::Custom; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::Custom; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1183:23:   required from here
- 1183 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1184 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1185 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp: In instantiation of 'void indexBarcodes(AlevinOpts<ProtocolT>&, CFreqMapT&, TrueBcsT&, SoftMapT&) [with ProtocolT = alevin::protocols::CustomGeometry; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >]':
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:780:16:   required from 'void processBarcodes(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, AlevinOpts<ProtocolT>&, SoftMapT&, TrueBcsT&, CFreqMapT&, size_t&) [with ProtocolT = alevin::protocols::CustomGeometry; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
-  780 |   indexBarcodes(aopt, freqCounter, trueBarcodes, barcodeSoftMap);
-      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:938:20:   required from 'void initiatePipeline(AlevinOpts<ProtocolT>&, SalmonOpts&, OrderedOptionsT&, boost::program_options::variables_map&, std::string, bool, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::CustomGeometry; OrderedOptionsT = boost::program_options::basic_parsed_options<char>; std::string = std::__cxx11::basic_string<char>]'
-  938 |     processBarcodes(barcodeFiles,
-      |     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
-  939 |                     readFiles,
-      |                     ~~~~~~~~~~
-  940 |                     aopt,
-      |                     ~~~~~
-  941 |                     barcodeSoftMap,
-      |                     ~~~~~~~~~~~~~~~
-  942 |                     trueBarcodes,
-      |                     ~~~~~~~~~~~~~
-  943 |                     freqCounter,
-      |                     ~~~~~~~~~~~~
-  944 |                     numLowConfidentBarcode);
-      |                     ~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:1189:23:   required from here
- 1189 |       initiatePipeline(aopt, sopt, orderedOptions,
-      |       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1190 |                        vm, commentString, noTgMap,
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~
- 1191 |                        barcodeFiles, readFiles, salmonIndex);
-      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: warning: loop variable 'trueBarcode' creates a copy from type 'const std::__cxx11::basic_string<char>' [-Wrange-loop-construct]
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:488:19: note: use reference type to prevent copying
-  488 |   for (const auto trueBarcode: trueBarcodes){
-      |                   ^~~~~~~~~~~
-      |                   &
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishSparseIndex; ProtocolT = alevin::protocols::DropSeq; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:1730:33:   required from 'sc_align_read_library<pufferfish::util::QuasiAlignment, alevin::protocols::DropSeq>(ReadExperimentT&, ReadLibrary&, SalmonIndex*, std::vector<Transcript>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, std::atomic<bool>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, size_t, std::vector<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >, std::allocator<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > > > >&, AlevinOpts<alevin::protocols::DropSeq>&, MappingStatistics&)::<lambda(size_t, auto:7*, auto:8*)> [with auto:7 = fastx_parser::FastxParser<fastx_parser::ReadPair>; auto:8 = PufferfishSparseIndex; size_t = long unsigned int]'
  1730 |          process_reads_sc_sketch(
@@ -6051,6 +5823,90 @@
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:397:63: warning: unused parameter 'transcripts' [-Wunused-parameter]
   397 |                        IndexT* qidx, std::vector<Transcript>& transcripts,
       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; mutable_value_type = std::pair<unsigned int, std::vector<unsigned int> >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; pointer = std::pair<const unsigned int, std::vector<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, std::vector<unsigned int> >; T = std::pair<const unsigned int, std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, std::vector<unsigned int> >; Value = std::pair<const unsigned int, std::vector<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; reference = std::pair<const unsigned int, std::vector<unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, std::vector<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, std::vector<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; value_type = std::pair<const unsigned int, std::vector<unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = std::vector<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > >; mapped_type = std::vector<unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:32:17:   required from here
+   32 |       tidMap[txp].emplace_back(eqId);
+      |                 ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, std::vector<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, std::vector<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, std::vector<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, std::vector<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, std::vector<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = std::vector<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = std::vector<unsigned int>]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; mutable_value_type = std::pair<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; pointer = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Value = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; reference = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; value_type = std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >; HashFcn = boost::hash<std::vector<unsigned int> >; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > >; mapped_type = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:285:29:   required from here
+  285 |         eqclassHash[genesVec].first += 1;
+      |                             ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >, spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >, spp::libc_allocator<std::pair<const std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > > > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> > >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = std::pair<unsigned int, spp::sparse_hash_map<short unsigned int, short unsigned int> >]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; mutable_value_type = std::pair<short unsigned int, short unsigned int>; reference = std::pair<const short unsigned int, short unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+ 1390 |         _init_val((mutable_pointer)(_group + offset), val);
+      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; pointer = std::pair<const short unsigned int, short unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const short unsigned int, short unsigned int>; T = std::pair<const short unsigned int, short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; reference = std::pair<const short unsigned int, short unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const short unsigned int, short unsigned int>; Value = std::pair<const short unsigned int, short unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; reference = std::pair<const short unsigned int, short unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<short unsigned int, short unsigned int>::DefaultValue; KT = short unsigned int&; Value = std::pair<const short unsigned int, short unsigned int>; Key = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; ExtractKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<short unsigned int, short unsigned int>::SetKey; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; value_type = std::pair<const short unsigned int, short unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = short unsigned int&; Key = short unsigned int; T = short unsigned int; HashFcn = spp::spp_hash<short unsigned int>; EqualKey = std::equal_to<short unsigned int>; Alloc = spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> >; mapped_type = short unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:286:47:   required from here
+  286 |         eqclassHash[genesVec].second[readspmol] += 1;
+      |                                               ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const short unsigned int, short unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> > >::value_type' {aka 'std::pair<const short unsigned int, short unsigned int>'} to 'spp::sparsegroup<std::pair<const short unsigned int, short unsigned int>, spp::libc_allocator<std::pair<const short unsigned int, short unsigned int> > >::mutable_reference' {aka 'std::pair<short unsigned int, short unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const short unsigned int; _U2 = short unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = short unsigned int; _T2 = short unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishSparseIndex; ProtocolT = alevin::protocols::CITESeq; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:1730:33:   required from 'sc_align_read_library<pufferfish::util::QuasiAlignment, alevin::protocols::CITESeq>(ReadExperimentT&, ReadLibrary&, SalmonIndex*, std::vector<Transcript>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, std::atomic<bool>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, size_t, std::vector<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >, std::allocator<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > > > >&, AlevinOpts<alevin::protocols::CITESeq>&, MappingStatistics&)::<lambda(size_t, auto:7*, auto:8*)> [with auto:7 = fastx_parser::FastxParser<fastx_parser::ReadPair>; auto:8 = PufferfishSparseIndex; size_t = long unsigned int]'
  1730 |          process_reads_sc_sketch(
@@ -6105,6 +5961,62 @@
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:397:63: warning: unused parameter 'transcripts' [-Wunused-parameter]
   397 |                        IndexT* qidx, std::vector<Transcript>& transcripts,
       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mutable_value_type = std::pair<std::vector<unsigned int>, unsigned int>; reference = std::pair<const std::vector<unsigned int>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; pointer = std::pair<const std::vector<unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::vector<unsigned int>, unsigned int>; T = std::pair<const std::vector<unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::vector<unsigned int>, unsigned int>; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; reference = std::pair<const std::vector<unsigned int>, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::DefaultValue; KT = std::vector<unsigned int>&; Value = std::pair<const std::vector<unsigned int>, unsigned int>; Key = std::vector<unsigned int>; HashFcn = boost::hash<std::vector<unsigned int> >; ExtractKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::vector<unsigned int>, unsigned int, boost::hash<std::vector<unsigned int> > >::SetKey; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; value_type = std::pair<const std::vector<unsigned int>, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::vector<unsigned int>&; Key = std::vector<unsigned int>; T = unsigned int; HashFcn = boost::hash<std::vector<unsigned int> >; EqualKey = std::equal_to<std::vector<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:413:29:   required from here
+  413 |         eqclassHash[genesVec] += 1;
+      |                             ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::vector<unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::vector<unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::vector<unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::vector<unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::vector<unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::vector<unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; mutable_value_type = std::pair<unsigned int, unsigned int>; reference = std::pair<const unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+ 1390 |         _init_val((mutable_pointer)(_group + offset), val);
+      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; pointer = std::pair<const unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, unsigned int>; T = std::pair<const unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; reference = std::pair<const unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, unsigned int>; Value = std::pair<const unsigned int, unsigned int>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; reference = std::pair<const unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, unsigned int>::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, unsigned int>; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; value_type = std::pair<const unsigned int, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = unsigned int; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:477:29:   required from here
+  477 |           vertexIndices[gene] = gid;
+      |                             ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const unsigned int, unsigned int>, spp::libc_allocator<std::pair<const unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishIndex; ProtocolT = alevin::protocols::CITESeq; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:1730:33:   required from 'sc_align_read_library<pufferfish::util::QuasiAlignment, alevin::protocols::CITESeq>(ReadExperimentT&, ReadLibrary&, SalmonIndex*, std::vector<Transcript>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, std::atomic<bool>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, size_t, std::vector<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >, std::allocator<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > > > >&, AlevinOpts<alevin::protocols::CITESeq>&, MappingStatistics&)::<lambda(size_t, auto:7*, auto:8*)> [with auto:7 = fastx_parser::FastxParser<fastx_parser::ReadPair>; auto:8 = PufferfishIndex; size_t = long unsigned int]'
  1730 |          process_reads_sc_sketch(
@@ -6483,33 +6395,6 @@
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:397:63: warning: unused parameter 'transcripts' [-Wunused-parameter]
   397 |                        IndexT* qidx, std::vector<Transcript>& transcripts,
       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                         ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishSparseIndex; ProtocolT = alevin::protocols::Gemcode; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:1730:33:   required from 'sc_align_read_library<pufferfish::util::QuasiAlignment, alevin::protocols::Gemcode>(ReadExperimentT&, ReadLibrary&, SalmonIndex*, std::vector<Transcript>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, std::atomic<bool>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, size_t, std::vector<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >, std::allocator<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > > > >&, AlevinOpts<alevin::protocols::Gemcode>&, MappingStatistics&)::<lambda(size_t, auto:7*, auto:8*)> [with auto:7 = fastx_parser::FastxParser<fastx_parser::ReadPair>; auto:8 = PufferfishSparseIndex; size_t = long unsigned int]'
  1730 |          process_reads_sc_sketch(
@@ -6564,29 +6449,38 @@
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:397:63: warning: unused parameter 'transcripts' [-Wunused-parameter]
   397 |                        IndexT* qidx, std::vector<Transcript>& transcripts,
       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; value_type = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
       |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; pointer = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
  1453 |         _set(alloc, i, offset, val);            // may change _group pointer
       |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
-   51 |     barcodeGroup[barcode][umi] = 1;
-      |                              ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2251:27:   required from 'void spp::sparsetable<T, Alloc>::move(size_type, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]'
+ 2251 |         which_group(i).set(_alloc, pos_in_group(i), val);
+      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2830:23:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2830 |             table.move(bucknum, *it);    // moves the value to here
+      |             ~~~~~~~~~~^~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2948 |         _move_from(mover, ht, min_buckets_wanted);
+      |         ^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2680:30:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_maybe_shrink() [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >]'
+ 2680 |             sparse_hashtable tmp(MoveDontCopy, *this, sz);
+      |                              ^~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2846:13:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::resize(size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2846 |             _maybe_shrink();
+      |             ^~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3799:51:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::resize(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 3799 |     void resize(size_type cnt)        { rep.resize(cnt); }
+      |                                         ~~~~~~~~~~^~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3801:41:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::reserve(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 3801 |     void reserve(size_type cnt)       { resize(cnt); } // c++11
+      |                                         ^~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:39:25:   required from here
+   39 |   vertexIndexMap.reserve(numClasses);
+      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::pair<unsigned int, unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::pair<unsigned int, unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::pair<unsigned int, unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
  1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
       |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishIndex; ProtocolT = alevin::protocols::Gemcode; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
@@ -6643,6 +6537,95 @@
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:397:63: warning: unused parameter 'transcripts' [-Wunused-parameter]
   397 |                        IndexT* qidx, std::vector<Transcript>& transcripts,
       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:65:
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp_utils.h: In instantiation of 'T* spp::libc_allocator<T>::reallocate(pointer, size_t) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; pointer = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>*; size_t = long unsigned int]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1383:38:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+ 1383 |             _group = alloc.reallocate(_group, num_alloc);
+      |                      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; pointer = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2251:27:   required from 'void spp::sparsetable<T, Alloc>::move(size_type, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]'
+ 2251 |         which_group(i).set(_alloc, pos_in_group(i), val);
+      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2830:23:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2830 |             table.move(bucknum, *it);    // moves the value to here
+      |             ~~~~~~~~~~^~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2948 |         _move_from(mover, ht, min_buckets_wanted);
+      |         ^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2680:30:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_maybe_shrink() [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >]'
+ 2680 |             sparse_hashtable tmp(MoveDontCopy, *this, sz);
+      |                              ^~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2846:13:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::resize(size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2846 |             _maybe_shrink();
+      |             ^~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3799:51:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::resize(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 3799 |     void resize(size_type cnt)        { rep.resize(cnt); }
+      |                                         ~~~~~~~~~~^~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3801:41:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::reserve(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 3801 |     void reserve(size_type cnt)       { resize(cnt); } // c++11
+      |                                         ^~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:39:25:   required from here
+   39 |   vertexIndexMap.reserve(numClasses);
+      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp_utils.h:425:51: warning: 'void* realloc(void*, size_t)' moving an object of non-trivially copyable type 'struct std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>'; use 'new' and 'delete' instead [-Wclass-memaccess]
+  425 |         pointer res = static_cast<pointer>(realloc(p, new_size * sizeof(T)));
+      |                                            ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
+                 from /usr/include/c++/14/string:51,
+                 from /usr/include/c++/14/bits/locale_classes.h:40,
+                 from /usr/include/c++/14/bits/ios_base.h:41,
+                 from /usr/include/c++/14/streambuf:43,
+                 from /usr/include/c++/14/bits/streambuf_iterator.h:35,
+                 from /usr/include/c++/14/iterator:66,
+                 from /usr/include/boost/graph/graph_traits.hpp:14,
+                 from /usr/include/boost/graph/depth_first_search.hpp:17,
+                 from /usr/include/boost/graph/connected_components.hpp:15,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:4:
+/usr/include/c++/14/bits/stl_pair.h:284:12: note: 'struct std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>' declared here
+  284 |     struct pair
+      |            ^~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; mutable_value_type = std::pair<std::pair<unsigned int, unsigned int>, unsigned int>; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1390:18:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_ok_type) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char; realloc_ok_type = spp::integral_constant<bool, true>]'
+ 1390 |         _init_val((mutable_pointer)(_group + offset), val);
+      |         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; pointer = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2251:27:   required from 'void spp::sparsetable<T, Alloc>::move(size_type, reference) [with T = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int; reference = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>&]'
+ 2251 |         which_group(i).set(_alloc, pos_in_group(i), val);
+      |         ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2830:23:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_move_from(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2830 |             table.move(bucknum, *it);    // moves the value to here
+      |             ~~~~~~~~~~^~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2948:9:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::sparse_hashtable(MoveDontCopyT, spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>&, size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2948 |         _move_from(mover, ht, min_buckets_wanted);
+      |         ^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2680:30:   required from 'bool spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_maybe_shrink() [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >]'
+ 2680 |             sparse_hashtable tmp(MoveDontCopy, *this, sz);
+      |                              ^~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2846:13:   required from 'void spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::resize(size_type) [with Value = std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>; Key = std::pair<unsigned int, unsigned int>; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; ExtractKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SelectKey; SetKey = spp::sparse_hash_map<std::pair<unsigned int, unsigned int>, unsigned int, boost::hash<std::pair<unsigned int, unsigned int> > >::SetKey; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 2846 |             _maybe_shrink();
+      |             ^~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3799:51:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::resize(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 3799 |     void resize(size_type cnt)        { rep.resize(cnt); }
+      |                                         ~~~~~~~~~~^~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3801:41:   required from 'void spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::reserve(size_type) [with Key = std::pair<unsigned int, unsigned int>; T = unsigned int; HashFcn = boost::hash<std::pair<unsigned int, unsigned int> >; EqualKey = std::equal_to<std::pair<unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> >; size_type = long unsigned int]'
+ 3801 |     void reserve(size_type cnt)       { resize(cnt); } // c++11
+      |                                         ^~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/DedupUMI.cpp:39:25:   required from here
+   39 |   vertexIndexMap.reserve(numClasses);
+      |   ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::value_type' {aka 'std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int>, spp::libc_allocator<std::pair<const std::pair<unsigned int, unsigned int>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::pair<unsigned int, unsigned int>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::pair<unsigned int, unsigned int>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::pair<unsigned int, unsigned int>; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishSparseIndex; ProtocolT = alevin::protocols::CELSeq; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:1730:33:   required from 'sc_align_read_library<pufferfish::util::QuasiAlignment, alevin::protocols::CELSeq>(ReadExperimentT&, ReadLibrary&, SalmonIndex*, std::vector<Transcript>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, std::atomic<bool>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, size_t, std::vector<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >, std::allocator<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > > > >&, AlevinOpts<alevin::protocols::CELSeq>&, MappingStatistics&)::<lambda(size_t, auto:7*, auto:8*)> [with auto:7 = fastx_parser::FastxParser<fastx_parser::ReadPair>; auto:8 = PufferfishSparseIndex; size_t = long unsigned int]'
  1730 |          process_reads_sc_sketch(
@@ -6967,31 +6950,6 @@
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:397:63: warning: unused parameter 'transcripts' [-Wunused-parameter]
   397 |                        IndexT* qidx, std::vector<Transcript>& transcripts,
       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
-   28 |         edges[source].insert(sink);
-      |                     ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishSparseIndex; ProtocolT = alevin::protocols::SplitSeqV2; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:1730:33:   required from 'sc_align_read_library<pufferfish::util::QuasiAlignment, alevin::protocols::SplitSeqV2>(ReadExperimentT&, ReadLibrary&, SalmonIndex*, std::vector<Transcript>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, std::atomic<bool>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, size_t, std::vector<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >, std::allocator<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > > > >&, AlevinOpts<alevin::protocols::SplitSeqV2>&, MappingStatistics&)::<lambda(size_t, auto:7*, auto:8*)> [with auto:7 = fastx_parser::FastxParser<fastx_parser::ReadPair>; auto:8 = PufferfishSparseIndex; size_t = long unsigned int]'
  1730 |          process_reads_sc_sketch(
@@ -7262,6 +7220,60 @@
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:397:63: warning: unused parameter 'transcripts' [-Wunused-parameter]
   397 |                        IndexT* qidx, std::vector<Transcript>& transcripts,
       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/ReadExperiment.hpp:7,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/SalmonMappingUtils.hpp:44,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonQuantify.cpp:93:
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_map<long unsigned int, unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; mapped_type = spp::sparse_hash_map<long unsigned int, unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:25:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                         ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_map<long unsigned int, unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_map<long unsigned int, unsigned int>]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>; reference = std::pair<const long unsigned int, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; pointer = std::pair<const long unsigned int, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const long unsigned int, unsigned int>; T = std::pair<const long unsigned int, unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const long unsigned int, unsigned int>; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; reference = std::pair<const long unsigned int, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<long unsigned int, unsigned int>::DefaultValue; KT = long unsigned int&; Value = std::pair<const long unsigned int, unsigned int>; Key = long unsigned int; HashFcn = spp::spp_hash<long unsigned int>; ExtractKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<long unsigned int, unsigned int>::SetKey; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; value_type = std::pair<const long unsigned int, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = long unsigned int&; Key = long unsigned int; T = unsigned int; HashFcn = spp::spp_hash<long unsigned int>; EqualKey = std::equal_to<long unsigned int>; Alloc = spp::libc_allocator<std::pair<const long unsigned int, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:51:30:   required from here
+   51 |     barcodeGroup[barcode][umi] = 1;
+      |                              ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::value_type' {aka 'std::pair<const long unsigned int, unsigned int>'} to 'spp::sparsegroup<std::pair<const long unsigned int, unsigned int>, spp::libc_allocator<std::pair<const long unsigned int, unsigned int> > >::mutable_reference' {aka 'std::pair<long unsigned int, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const long unsigned int; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = long unsigned int; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishIndex; ProtocolT = alevin::protocols::SciSeq3; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:1730:33:   required from 'sc_align_read_library<pufferfish::util::QuasiAlignment, alevin::protocols::SciSeq3>(ReadExperimentT&, ReadLibrary&, SalmonIndex*, std::vector<Transcript>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, std::atomic<bool>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, size_t, std::vector<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >, std::allocator<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > > > >&, AlevinOpts<alevin::protocols::SciSeq3>&, MappingStatistics&)::<lambda(size_t, auto:7*, auto:8*)> [with auto:7 = fastx_parser::FastxParser<fastx_parser::ReadPair>; auto:8 = PufferfishIndex; size_t = long unsigned int]'
  1730 |          process_reads_sc_sketch(
@@ -7424,6 +7436,31 @@
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:397:63: warning: unused parameter 'transcripts' [-Wunused-parameter]
   397 |                        IndexT* qidx, std::vector<Transcript>& transcripts,
       |                                      ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; pointer = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >*; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; reference = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::DefaultValue; KT = unsigned int&; Value = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >; Key = unsigned int; HashFcn = spp::spp_hash<unsigned int>; ExtractKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SelectKey; SetKey = spp::sparse_hash_map<unsigned int, spp::sparse_hash_set<unsigned int> >::SetKey; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = unsigned int&; Key = unsigned int; T = spp::sparse_hash_set<unsigned int>; HashFcn = spp::spp_hash<unsigned int>; EqualKey = std::equal_to<unsigned int>; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > >; mapped_type = spp::sparse_hash_set<unsigned int>]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/include/Graph.hpp:28:21:   required from here
+   28 |         edges[source].insert(sink);
+      |                     ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp: In instantiation of 'void process_reads_sc_sketch(alevin::paired_parser*, ReadExperimentT&, ReadLibrary&, alevin::AlnGroupVec<pufferfish::util::QuasiAlignment>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, IndexT*, std::vector<Transcript>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, AlevinOpts<ProtocolT>&, MappingStatistics&) [with IndexT = PufferfishSparseIndex; ProtocolT = alevin::protocols::CustomGeometry; alevin::paired_parser = fastx_parser::FastxParser<fastx_parser::ReadPair>; ReadExperimentT = ReadExperiment<EquivalenceClassBuilder<SCTGValue> >; alevin::AlnGroupVec<pufferfish::util::QuasiAlignment> = std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >; std::ofstream = std::basic_ofstream<char>]':
 /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:1730:33:   required from 'sc_align_read_library<pufferfish::util::QuasiAlignment, alevin::protocols::CustomGeometry>(ReadExperimentT&, ReadLibrary&, SalmonIndex*, std::vector<Transcript>&, std::atomic<long unsigned int>&, std::atomic<long unsigned int>&, std::atomic<unsigned int>&, std::atomic<unsigned int>&, std::atomic<bool>&, FragmentLengthDistribution&, SalmonOpts&, std::atomic<long unsigned int>&, std::ofstream&, std::ofstream&, std::mutex&, std::mutex&, std::mutex&, size_t, std::vector<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > >, std::allocator<std::vector<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int>, std::allocator<AlignmentGroup<pufferfish::util::QuasiAlignment, unsigned int, long unsigned int> > > > >&, AlevinOpts<alevin::protocols::CustomGeometry>&, MappingStatistics&)::<lambda(size_t, auto:7*, auto:8*)> [with auto:7 = fastx_parser::FastxParser<fastx_parser::ReadPair>; auto:8 = PufferfishSparseIndex; size_t = long unsigned int]'
  1730 |          process_reads_sc_sketch(
@@ -7617,8 +7654,7 @@
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
 In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinHash.hpp:10,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/Alevin.cpp:58:
+                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:95:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -7778,8 +7814,65 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/AlevinUtils.hpp:47,
-                 from /build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:95:
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
+ 1440 |             _set_val(&_group[offset], val);
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; pointer = std::pair<const std::__cxx11::basic_string<char>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::DefaultValue; KT = std::__cxx11::basic_string<char>&; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::__cxx11::basic_string<char>&; Key = std::__cxx11::basic_string<char>; T = unsigned int; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:2647:50:   required from 'int alevinQuant(AlevinOpts<ProtocolT>&, SalmonOpts&, SoftMapT&, TrueBcsT&, spp::sparse_hash_map<unsigned int, unsigned int>&, spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>&, boost::program_options::parsed_options&, CFreqMapT&, size_t, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::DropSeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; boost::program_options::parsed_options = boost::program_options::basic_parsed_options<char>; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+ 2647 |       trueBarcodesIndexMap[ trueBarcodesVec[i] ] = i;
+/build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:2786:54:   required from here
+ 2786 |             std::unique_ptr<SalmonIndex>& salmonIndex);
+      |                                                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
+      |                                         ^~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mutable_value_type = std::pair<std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
+ 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
+      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
+ 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
+      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; pointer = std::pair<const std::__cxx11::basic_string<char>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
+ 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
+      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
+ 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
+      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
+ 3170 |         return table.set(pos, obj);
+      |                ~~~~~~~~~^~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::DefaultValue; KT = std::__cxx11::basic_string<char>&; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>]'
+ 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
+      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::__cxx11::basic_string<char>&; Key = std::__cxx11::basic_string<char>; T = unsigned int; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mapped_type = unsigned int]'
+ 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
+      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
+/build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:2647:50:   required from 'int alevinQuant(AlevinOpts<ProtocolT>&, SalmonOpts&, SoftMapT&, TrueBcsT&, spp::sparse_hash_map<unsigned int, unsigned int>&, spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>&, boost::program_options::parsed_options&, CFreqMapT&, size_t, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::DropSeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; boost::program_options::parsed_options = boost::program_options::basic_parsed_options<char>; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
+ 2647 |       trueBarcodesIndexMap[ trueBarcodesVec[i] ] = i;
+/build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:2786:54:   required from here
+ 2786 |             std::unique_ptr<SalmonIndex>& salmonIndex);
+      |                                                      ^
+/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = unsigned int]' [-Wcast-user-defined]
+ 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
+      |                                        ^~~~~~~~~~~~~~~~~~~~~~
+In file included from /build/reproducible-path/salmon-1.10.2+ds1/include/EquivalenceClassBuilder.hpp:18,
+                 from /build/reproducible-path/salmon-1.10.2+ds1/include/AlignmentLibrary.hpp:19:
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; value_type = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; reference = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >&]':
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; T = std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> >; Alloc = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; allocator_type = spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_map<long unsigned int, unsigned int> > >; size_type = unsigned char]'
  1440 |             _set_val(&_group[offset], val);
@@ -7939,63 +8032,6 @@
 /build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::value_type' {aka 'std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >'} to 'spp::sparsegroup<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> >, spp::libc_allocator<std::pair<const unsigned int, spp::sparse_hash_set<unsigned int> > > >::mutable_reference' {aka 'std::pair<unsigned int, spp::sparse_hash_set<unsigned int> >&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const unsigned int; _U2 = spp::sparse_hash_set<unsigned int>; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = unsigned int; _T2 = spp::sparse_hash_set<unsigned int>]' [-Wcast-user-defined]
  1339 |         ::new (p) value_type(std::move((mutable_reference)val));
       |                                        ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_set_val(value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1440:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
- 1440 |             _set_val(&_group[offset], val);
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; pointer = std::pair<const std::__cxx11::basic_string<char>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::DefaultValue; KT = std::__cxx11::basic_string<char>&; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::__cxx11::basic_string<char>&; Key = std::__cxx11::basic_string<char>; T = unsigned int; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:2647:50:   required from 'int alevinQuant(AlevinOpts<ProtocolT>&, SalmonOpts&, SoftMapT&, TrueBcsT&, spp::sparse_hash_map<unsigned int, unsigned int>&, spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>&, boost::program_options::parsed_options&, CFreqMapT&, size_t, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::DropSeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; boost::program_options::parsed_options = boost::program_options::basic_parsed_options<char>; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
- 2647 |       trueBarcodesIndexMap[ trueBarcodesVec[i] ] = i;
-/build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:2786:54:   required from here
- 2786 |             std::unique_ptr<SalmonIndex>& salmonIndex);
-      |                                                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1355:41: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = unsigned int]' [-Wcast-user-defined]
- 1355 |         *(mutable_pointer)p = std::move((mutable_reference)val);
-      |                                         ^~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h: In instantiation of 'void spp::sparsegroup<T, Alloc>::_init_val(mutable_value_type*, reference) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mutable_value_type = std::pair<std::__cxx11::basic_string<char>, unsigned int>; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&]':
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1407:22:   required from 'void spp::sparsegroup<T, Alloc>::_set_aux(allocator_type&, size_type, Val&, realloc_not_ok_type) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char; realloc_not_ok_type = spp::integral_constant<bool, false>]'
- 1407 |             _init_val((mutable_pointer)&_group[num_items], val);
-      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1435:21:   required from 'void spp::sparsegroup<T, Alloc>::_set(allocator_type&, size_type, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
- 1435 |             _set_aux(alloc, offset, val, check_alloc_type());
-      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1453:13:   required from 'spp::sparsegroup<T, Alloc>::value_type* spp::sparsegroup<T, Alloc>::set(allocator_type&, size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; pointer = std::pair<const std::__cxx11::basic_string<char>, unsigned int>*; allocator_type = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; size_type = unsigned char]'
- 1453 |         _set(alloc, i, offset, val);            // may change _group pointer
-      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:2242:28:   required from 'spp::sparsetable<T, Alloc>::value_type& spp::sparsetable<T, Alloc>::set(size_type, Val&) [with Val = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
- 2242 |         pointer p(group.set(_alloc, pos_in_group(i), val));
-      |                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3170:25:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::_insert_at(T&, size_type, bool) [with T = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; reference = std::pair<const std::__cxx11::basic_string<char>, unsigned int>&; size_type = long unsigned int]'
- 3170 |         return table.set(pos, obj);
-      |                ~~~~~~~~~^~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3287:38:   required from 'spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::value_type& spp::sparse_hashtable<Value, Key, HashFcn, ExtractKey, SetKey, EqualKey, Alloc>::find_or_insert(KT&&) [with DefaultValue = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::DefaultValue; KT = std::__cxx11::basic_string<char>&; Value = std::pair<const std::__cxx11::basic_string<char>, unsigned int>; Key = std::__cxx11::basic_string<char>; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; ExtractKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SelectKey; SetKey = spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>::SetKey; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; value_type = std::pair<const std::__cxx11::basic_string<char>, unsigned int>]'
- 3287 |                     return _insert_at(def, erased ? erased_pos : bucknum, erased);
-      |                            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:3813:57:   required from 'spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::mapped_type& spp::sparse_hash_map<Key, T, HashFcn, EqualKey, Alloc>::operator[](KT&&) [with KT = std::__cxx11::basic_string<char>&; Key = std::__cxx11::basic_string<char>; T = unsigned int; HashFcn = spp::spp_hash<std::__cxx11::basic_string<char> >; EqualKey = std::equal_to<std::__cxx11::basic_string<char> >; Alloc = spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> >; mapped_type = unsigned int]'
- 3813 |         return rep.template find_or_insert<DefaultValue>(std::forward<KT>(key)).second;
-      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
-/build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:2647:50:   required from 'int alevinQuant(AlevinOpts<ProtocolT>&, SalmonOpts&, SoftMapT&, TrueBcsT&, spp::sparse_hash_map<unsigned int, unsigned int>&, spp::sparse_hash_map<std::__cxx11::basic_string<char>, unsigned int>&, boost::program_options::parsed_options&, CFreqMapT&, size_t, std::unique_ptr<SalmonIndex>&) [with ProtocolT = alevin::protocols::DropSeq; SoftMapT = std::unordered_map<std::__cxx11::basic_string<char>, std::vector<std::pair<std::__cxx11::basic_string<char>, double> > >; TrueBcsT = std::unordered_set<std::__cxx11::basic_string<char> >; boost::program_options::parsed_options = boost::program_options::basic_parsed_options<char>; CFreqMapT = tsl::array_map<char, unsigned int, BarcodeGroupStringHasherMetro>; size_t = long unsigned int]'
- 2647 |       trueBarcodesIndexMap[ trueBarcodesVec[i] ] = i;
-/build/reproducible-path/salmon-1.10.2+ds1/src/SalmonAlevin.cpp:2786:54:   required from here
- 2786 |             std::unique_ptr<SalmonIndex>& salmonIndex);
-      |                                                      ^
-/build/reproducible-path/salmon-1.10.2+ds1/external/install/include/pufferfish/sparsepp/spp.h:1339:40: warning: casting 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::value_type' {aka 'std::pair<const std::__cxx11::basic_string<char>, unsigned int>'} to 'spp::sparsegroup<std::pair<const std::__cxx11::basic_string<char>, unsigned int>, spp::libc_allocator<std::pair<const std::__cxx11::basic_string<char>, unsigned int> > >::mutable_reference' {aka 'std::pair<std::__cxx11::basic_string<char>, unsigned int>&'} does not use 'constexpr std::pair<_T1, _T2>::pair(const std::pair<_U1, _U2>&) [with _U1 = const std::__cxx11::basic_string<char>; _U2 = unsigned int; typename std::enable_if<(std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ConstructiblePair<_U1, _U2>() && std::_PCC<((! std::is_same<_T1, _U1>::value) || (! std::is_same<_T2, _U2>::value)), _T1, _T2>::_ImplicitlyConvertiblePair<_U1, _U2>()), bool>::type <anonymous> = true; _T1 = std::__cxx11::basic_string<char>; _T2 = unsigned int]' [-Wcast-user-defined]
- 1339 |         ::new (p) value_type(std::move((mutable_reference)val));
-      |                                        ^~~~~~~~~~~~~~~~~~~~~~
 [100%] Linking CXX executable salmon
 cd /build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/salmon.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/salmon-1.10.2+ds1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/salmon.dir/link.d CMakeFiles/salmon.dir/EMUtils.cpp.o CMakeFiles/salmon.dir/CollapsedEMOptimizer.cpp.o CMakeFiles/salmon.dir/CollapsedCellOptimizer.cpp.o CMakeFiles/salmon.dir/CollapsedGibbsSampler.cpp.o CMakeFiles/salmon.dir/Salmon.cpp.o CMakeFiles/salmon.dir/BuildSalmonIndex.cpp.o CMakeFiles/salmon.dir/Graph.cpp.o CMakeFiles/salmon.dir/DedupUMI.cpp.o CMakeFiles/salmon.dir/Alevin.cpp.o CMakeFiles/salmon.dir/AlevinHash.cpp.o CMakeFiles/salmon.dir/SalmonAlevin.cpp.o CMakeFiles/salmon.dir/WhiteList.cpp.o CMakeFiles/salmon.dir/SalmonQuantify.cpp.o CMakeFiles/salmon.dir/FragmentLengthDistribution.cpp.o CMakeFiles/salmon.dir/FragmentStartPositionDistribution.cpp.o CMakeFiles/salmon.dir/GZipWriter.cpp.o CMakeFiles/salmon.dir/SalmonQuantMerge.cpp.o CMakeFiles/salmon.dir/ProgramOptionsGenerator.cpp.o CMakeFiles/salmon.dir/FASTAParser.cpp.o CMakeFiles/salmon.dir/AlignmentModel.cpp.o CMakeFiles/salmon.dir/ONTAlignmentModel.cpp.o CMakeFiles/salmon.dir/AlignmentCommon.cpp.o CMakeFiles/salmon.dir/SalmonQuantifyAlignments.cpp.o CMakeFiles/salmon.dir/BAMUtils.cpp.o -o salmon   -L/build/reproducible-path/salmon-1.10.2+ds1/lib  -L/build/reproducible-path/salmon-1.10.2+ds1/external/install/lib  -Wl,-rpath,"\$ORIGIN/../lib:\$ORIGIN/../../lib:\$ORIGIN/:\$ORIGIN/../../external/install/lib" ../external/pufferfish/src/libpuffer.a libsalmon_core.a ../external/pufferfish/external/twopaco/graphconstructor/libtwopaco.a ../external/pufferfish/external/twopaco/graphdump/libgraphdump.a ../external/pufferfish/external/ntcard/libntcard.a -lgff -lboost_iostreams -lboost_filesystem -lboost_system -lboost_timer -lboost_chrono -lboost_program_options -lboost_regex /usr/lib/x86_64-linux-gnu/libcurl.so -lz -lm /usr/lib/x86_64-linux-gnu/libstaden-read.so /usr/lib/x86_64-linux-gnu/libhtscodecs.so -llzma -lbz2 -lgomp ../external/pufferfish/src/libksw2pp.a libalevin_core.a -ltbb -ltbbmalloc -ljemalloc -lrt -ldl
@@ -8134,11 +8170,11 @@
 preparing documents... done
 copying assets... 
 copying static files... 
-Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/documentation_options.js
-Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/basic.css
 Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/language_data.js
-Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/classic.css
+Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/basic.css
+Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/documentation_options.js
 Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/sidebar.js
+Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/classic.css
 Writing evaluated template result to /build/reproducible-path/salmon-1.10.2+ds1/doc/build/html/_static/sidebar.js
 copying static files: done
 copying extra files... 
@@ -8193,9 +8229,9 @@
 1: Test timeout computed to be: 10000000
 1: -- For unit tests, will set working directory to /build/reproducible-path/salmon-1.10.2+ds1/tests
 1: ===============================================================================
-1: All tests passed (1983205 assertions in 4 test cases)
+1: All tests passed (2022279 assertions in 4 test cases)
 1: 
-1/2 Test #1: unit_tests .......................   Passed    0.22 sec
+1/2 Test #1: unit_tests .......................   Passed    3.22 sec
 test 2
     Start 2: salmon_read_test_quasi
 
@@ -8208,18 +8244,18 @@
 2: sample_data/transcripts.fasta
 2: sample_data/reads_1.fastq
 2: index ["sample_salmon_quasi_index"] did not previously exist  . . . creating it
-2: [2026-04-16 01:19:23.148] [jLog] [warning] The salmon index is being built without any decoy sequences.  It is recommended that decoy sequence (either computed auxiliary decoy sequence or the genome of the organism) be provided during indexing. Further details can be found at https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode.
-2: [2026-04-16 01:19:23.148] [jLog] [info] building index
+2: [2025-03-14 21:41:20.480] [jLog] [warning] The salmon index is being built without any decoy sequences.  It is recommended that decoy sequence (either computed auxiliary decoy sequence or the genome of the organism) be provided during indexing. Further details can be found at https://salmon.readthedocs.io/en/latest/salmon.html#preparing-transcriptome-indices-mapping-based-mode.
+2: [2025-03-14 21:41:20.482] [jLog] [info] building index
 2: out : sample_salmon_quasi_index
-2: [2026-04-16 01:19:23.148] [puff::index::jointLog] [info] Running fixFasta
+2: [2025-03-14 21:41:20.482] [puff::index::jointLog] [info] Running fixFasta
 2: 
 2: [Step 1 of 4] : counting k-mers
 2: 
-2: [2026-04-16 01:19:23.152] [puff::index::jointLog] [info] Replaced 0 non-ATCG nucleotides
-2: [2026-04-16 01:19:23.152] [puff::index::jointLog] [info] Clipped poly-A tails from 0 transcripts
+2: [2025-03-14 21:41:20.530] [puff::index::jointLog] [info] Replaced 0 non-ATCG nucleotides
+2: [2025-03-14 21:41:20.530] [puff::index::jointLog] [info] Clipped poly-A tails from 0 transcripts
 2: wrote 15 cleaned references
-2: [2026-04-16 01:19:23.152] [puff::index::jointLog] [info] Filter size not provided; estimating from number of distinct k-mers
-2: [2026-04-16 01:19:23.153] [puff::index::jointLog] [info] ntHll estimated 54811 distinct k-mers, setting filter size to 2^20
+2: [2025-03-14 21:41:20.543] [puff::index::jointLog] [info] Filter size not provided; estimating from number of distinct k-mers
+2: [2025-03-14 21:41:20.546] [puff::index::jointLog] [info] ntHll estimated 54811 distinct k-mers, setting filter size to 2^20
 2: Threads = 2
 2: Vertex length = 31
 2: Hash functions = 5
@@ -8233,9 +8269,9 @@
 2: 1	0	0	
 2: 2	0	0
 2: True junctions count = 14
-2: False junctions count = 17
-2: Hash table size = 31
-2: Candidate marks count = 54
+2: False junctions count = 18
+2: Hash table size = 32
+2: Candidate marks count = 56
 2: --------------------------------------------------------------------------------
 2: Reallocating bifurcations time: 0
 2: True marks count: 51
@@ -8253,44 +8289,44 @@
 2: (prec>1 & succ>1)=0 | (succ>1 & isStart)=0 | (prec>1 & isEnd)=0 | (isStart & isEnd)=0
 2: contig count: 24 element count: 19592 complex nodes: 0
 2: # of ones in rank vector: 23
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] Starting the Pufferfish indexing by reading the GFA binary file.
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] Setting the index/BinaryGfa directory sample_salmon_quasi_index
+2: [2025-03-14 21:41:20.837] [puff::index::jointLog] [info] Starting the Pufferfish indexing by reading the GFA binary file.
+2: [2025-03-14 21:41:20.837] [puff::index::jointLog] [info] Setting the index/BinaryGfa directory sample_salmon_quasi_index
 2: size = 19592
 2: -----------------------------------------
-2: | Loading contigs | Time = 87.524 us
+2: | Loading contigs | Time = 108.21 us
 2: -----------------------------------------
 2: size = 19592
 2: -----------------------------------------
-2: | Loading contig boundaries | Time = 61.082 us
+2: | Loading contig boundaries | Time = 51.36 us
 2: -----------------------------------------
 2: Number of ones: 23
 2: Number of ones per inventory item: 512
 2: Inventory entries filled: 1
 2: 23
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] Done wrapping the rank vector with a rank9sel structure.
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] contig count for validation: 23
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] Total # of Contigs : 23
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] Total # of numerical Contigs : 23
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] Total # of contig vec entries: 36
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] bits per offset entry 6
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] Done constructing the contig vector. 24
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] # segments = 23
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] total length = 19,592
-2: [2026-04-16 01:19:23.175] [puff::index::jointLog] [info] Reading the reference files ...
-2: [2026-04-16 01:19:23.176] [puff::index::jointLog] [info] positional integer width = 15
-2: [2026-04-16 01:19:23.176] [puff::index::jointLog] [info] seqSize = 19,592
-2: [2026-04-16 01:19:23.176] [puff::index::jointLog] [info] rankSize = 19,592
-2: [2026-04-16 01:19:23.176] [puff::index::jointLog] [info] edgeVecSize = 0
-2: [2026-04-16 01:19:23.176] [puff::index::jointLog] [info] num keys = 18,902
-2: 
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-2: [2026-04-16 01:19:23.190] [puff::index::jointLog] [info] mphf size = 0.0125198 MB
-2: [2026-04-16 01:19:23.190] [puff::index::jointLog] [info] chunk size = 9,796
-2: [2026-04-16 01:19:23.190] [puff::index::jointLog] [info] chunk 0 = [0, 9,796)
-2: [2026-04-16 01:19:23.190] [puff::index::jointLog] [info] chunk 1 = [9,796, 19,562)
-2: [2026-04-16 01:19:23.192] [puff::index::jointLog] [info] finished populating pos vector
-2: [2026-04-16 01:19:23.192] [puff::index::jointLog] [info] writing index components
-2: [2026-04-16 01:19:23.192] [puff::index::jointLog] [info] finished writing dense pufferfish index
-2: [2026-04-16 01:19:23.193] [jLog] [info] done building index
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] Done wrapping the rank vector with a rank9sel structure.
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] contig count for validation: 23
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] Total # of Contigs : 23
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] Total # of numerical Contigs : 23
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] Total # of contig vec entries: 36
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] bits per offset entry 6
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] Done constructing the contig vector. 24
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] # segments = 23
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] total length = 19,592
+2: [2025-03-14 21:41:20.838] [puff::index::jointLog] [info] Reading the reference files ...
+2: [2025-03-14 21:41:20.858] [puff::index::jointLog] [info] positional integer width = 15
+2: [2025-03-14 21:41:20.858] [puff::index::jointLog] [info] seqSize = 19,592
+2: [2025-03-14 21:41:20.858] [puff::index::jointLog] [info] rankSize = 19,592
+2: [2025-03-14 21:41:20.858] [puff::index::jointLog] [info] edgeVecSize = 0
+2: [2025-03-14 21:41:20.858] [puff::index::jointLog] [info] num keys = 18,902
+2: 
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+2: [2025-03-14 21:41:21.397] [puff::index::jointLog] [info] mphf size = 0.0125198 MB
+2: [2025-03-14 21:41:21.397] [puff::index::jointLog] [info] chunk size = 9,796
+2: [2025-03-14 21:41:21.397] [puff::index::jointLog] [info] chunk 0 = [0, 9,796)
+2: [2025-03-14 21:41:21.397] [puff::index::jointLog] [info] chunk 1 = [9,796, 19,562)
+2: [2025-03-14 21:41:21.427] [puff::index::jointLog] [info] finished populating pos vector
+2: [2025-03-14 21:41:21.427] [puff::index::jointLog] [info] writing index components
+2: [2025-03-14 21:41:21.428] [puff::index::jointLog] [info] finished writing dense pufferfish index
+2: [2025-03-14 21:41:21.429] [jLog] [info] done building index
 2: for info, total work write each  : 2.331    total work inram from level 3 : 4.322  total work raw : 25.000 
 2: Bitarray          105024  bits (100.00 %)   (array + ranks )
 2: final hash             0  bits (0.00 %) (nb in final hash 0)
@@ -8303,52 +8339,52 @@
 2: ### [ mates2 ] => { reads_2.fastq }
 2: ### [ output ] => { sample_salmon_quasi_quant }
 2: Logs will be written to sample_salmon_quasi_quant/logs
-2: [2026-04-16 01:19:23.231] [jointLog] [info] setting maxHashResizeThreads to 42
 2: -----------------------------------------
-2: | Loading contig table | Time = 33.683 us
+2: | Loading contig table | Time = 40.315 us
 2: -----------------------------------------
 2: size = 24
 2: -----------------------------------------
-2: | Loading contig offsets | Time = 93.853 us
+2: | Loading contig offsets | Time = 77.045 us
 2: -----------------------------------------
 2: -----------------------------------------
-2: | Loading reference lengths | Time = 10.156 us
+2: | Loading reference lengths | Time = 7.769 us
 2: -----------------------------------------
 2: -----------------------------------------
-2: | Loading mphf table | Time = 63.932 us
+2: | Loading mphf table | Time = 79.474 us
 2: -----------------------------------------
 2: size = 19592
 2: Number of ones: 23
 2: Number of ones per inventory item: 512
 2: Inventory entries filled: 1
 2: -----------------------------------------
-2: | Loading contig boundaries | Time = 143.57 us
+2: | Loading contig boundaries | Time = 117.56 us
 2: -----------------------------------------
 2: size = 19592
 2: -----------------------------------------
-2: | Loading sequence | Time = 88.154 us
+2: | Loading sequence | Time = 60.514 us
 2: -----------------------------------------
 2: size = 18902
 2: -----------------------------------------
-2: | Loading positions | Time = 117.14 us
+2: | Loading positions | Time = 123.48 us
 2: -----------------------------------------
 2: size = 28562
 2: -----------------------------------------
-2: | Loading reference sequence | Time = 74.993 us
+2: | Loading reference sequence | Time = 59.662 us
 2: -----------------------------------------
 2: -----------------------------------------
-2: | Loading reference accumulative lengths | Time = 9.24 us
+2: | Loading reference accumulative lengths | Time = 7.568 us
 2: -----------------------------------------
-2: [2026-04-16 01:19:23.231] [jointLog] [info] Fragment incompatibility prior below threshold.  Incompatible fragments will be ignored.
-2: [2026-04-16 01:19:23.231] [jointLog] [info] Usage of --validateMappings implies use of minScoreFraction. Since not explicitly specified, it is being set to 0.65
-2: [2026-04-16 01:19:23.232] [jointLog] [info] Setting consensusSlack to selective-alignment default of 0.35.
-2: [2026-04-16 01:19:23.232] [jointLog] [info] parsing read library format
-2: [2026-04-16 01:19:23.232] [jointLog] [info] There is 1 library.
-2: [2026-04-16 01:19:23.232] [jointLog] [info] Loading pufferfish index
-2: [2026-04-16 01:19:23.232] [jointLog] [info] Loading dense pufferfish index.
-2: [2026-04-16 01:19:23.233] [jointLog] [info] done
-2: [2026-04-16 01:19:23.289] [jointLog] [info] Index contained 15 targets
-2: [2026-04-16 01:19:23.289] [jointLog] [info] Number of decoys : 0
+2: [2025-03-14 21:41:22.125] [jointLog] [info] setting maxHashResizeThreads to 20
+2: [2025-03-14 21:41:22.125] [jointLog] [info] Fragment incompatibility prior below threshold.  Incompatible fragments will be ignored.
+2: [2025-03-14 21:41:22.125] [jointLog] [info] Usage of --validateMappings implies use of minScoreFraction. Since not explicitly specified, it is being set to 0.65
+2: [2025-03-14 21:41:22.125] [jointLog] [info] Setting consensusSlack to selective-alignment default of 0.35.
+2: [2025-03-14 21:41:22.125] [jointLog] [info] parsing read library format
+2: [2025-03-14 21:41:22.125] [jointLog] [info] There is 1 library.
+2: [2025-03-14 21:41:22.125] [jointLog] [info] Loading pufferfish index
+2: [2025-03-14 21:41:22.125] [jointLog] [info] Loading dense pufferfish index.
+2: [2025-03-14 21:41:22.126] [jointLog] [info] done
+2: [2025-03-14 21:41:23.578] [jointLog] [info] Index contained 15 targets
+2: [2025-03-14 21:41:23.578] [jointLog] [info] Number of decoys : 0
 2: 
 2: 
 2: 
@@ -8357,35 +8393,35 @@
 2: 
 2: 
 2: 
+2: [2025-03-14 21:41:26.565] [jointLog] [info] Computed 28 rich equivalence classes for further processing
+2: [2025-03-14 21:41:26.565] [jointLog] [info] Counted 10,000 total reads in the equivalence classes 
 2: 
 2: 
 2: 
 2: 
-2: [2026-04-16 01:19:23.509] [jointLog] [info] Computed 28 rich equivalence classes for further processing
-2: [2026-04-16 01:19:23.509] [jointLog] [info] Counted 10,000 total reads in the equivalence classes 
-2: [2026-04-16 01:19:23.523] [jointLog] [info] Number of mappings discarded because of alignment score : 67
-2: [2026-04-16 01:19:23.523] [jointLog] [info] Number of fragments entirely discarded because of alignment score : 0
-2: [2026-04-16 01:19:23.523] [jointLog] [info] Number of fragments discarded because they are best-mapped to decoys : 0
-2: [2026-04-16 01:19:23.523] [jointLog] [info] Number of fragments discarded because they have only dovetail (discordant) mappings to valid targets : 0
-2: [2026-04-16 01:19:23.523] [jointLog] [warning] Only 10000 fragments were mapped, but the number of burn-in fragments was set to 5000000.
+2: [2025-03-14 21:41:26.715] [jointLog] [info] Number of mappings discarded because of alignment score : 67
+2: [2025-03-14 21:41:26.715] [jointLog] [info] Number of fragments entirely discarded because of alignment score : 0
+2: [2025-03-14 21:41:26.715] [jointLog] [info] Number of fragments discarded because they are best-mapped to decoys : 0
+2: [2025-03-14 21:41:26.715] [jointLog] [info] Number of fragments discarded because they have only dovetail (discordant) mappings to valid targets : 0
+2: [2025-03-14 21:41:26.739] [jointLog] [warning] Only 10000 fragments were mapped, but the number of burn-in fragments was set to 5000000.
 2: The effective lengths have been computed using the observed mappings.
 2: 
-2: [2026-04-16 01:19:23.523] [jointLog] [info] Mapping rate = 100%
+2: [2025-03-14 21:41:26.739] [jointLog] [info] Mapping rate = 100%
 2: 
-2: [2026-04-16 01:19:23.523] [jointLog] [info] finished quantifyLibrary()
-2: [2026-04-16 01:19:23.523] [jointLog] [info] Starting optimizer
-2: [2026-04-16 01:19:23.524] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate
-2: [2026-04-16 01:19:23.524] [jointLog] [info] iteration = 0 | max rel diff. = 14.87
-2: [2026-04-16 01:19:23.525] [jointLog] [info] iteration = 100 | max rel diff. = 3.90117e-05
-2: [2026-04-16 01:19:23.525] [jointLog] [info] Finished optimizer
-2: [2026-04-16 01:19:23.525] [jointLog] [info] writing output 
+2: [2025-03-14 21:41:26.740] [jointLog] [info] finished quantifyLibrary()
+2: [2025-03-14 21:41:26.740] [jointLog] [info] Starting optimizer
+2: [2025-03-14 21:41:26.741] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate
+2: [2025-03-14 21:41:26.741] [jointLog] [info] iteration = 0 | max rel diff. = 14.87
+2: [2025-03-14 21:41:26.743] [jointLog] [info] iteration = 100 | max rel diff. = 3.30868e-05
+2: [2025-03-14 21:41:26.743] [jointLog] [info] Finished optimizer
+2: [2025-03-14 21:41:26.743] [jointLog] [info] writing output 
 2: 
 2: Salmon (read) ran successfully
-2/2 Test #2: salmon_read_test_quasi ...........   Passed    0.92 sec
+2/2 Test #2: salmon_read_test_quasi ...........   Passed    8.55 sec
 
 100% tests passed, 0 tests failed out of 2
 
-Total Test time (real) =   1.14 sec
+Total Test time (real) =  11.86 sec
 make[2]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 make[1]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1'
    create-stamp debian/debhelper-build-stamp
@@ -8393,7 +8429,7 @@
    debian/rules override_dh_auto_install
 make[1]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1'
 dh_auto_install
-	cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/salmon-1.10.2\+ds1/debian/salmon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+	cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/salmon-1.10.2\+ds1/debian/salmon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
 make[2]: Entering directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 /usr/bin/cmake -S/build/reproducible-path/salmon-1.10.2+ds1 -B/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
 make  -f CMakeFiles/Makefile2 preinstall
@@ -8424,28 +8460,28 @@
 ==========================================================================
 make[2]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1/obj-x86_64-linux-gnu'
 rm -Rvf /build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib
-removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/ntcard/ntcard-targets-release.cmake'
+removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/libsalmon_core.a'
+removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/libgraphdump.a'
 removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/ntcard/ntcard-targets.cmake'
+removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/ntcard/ntcard-targets-release.cmake'
 removed directory '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/ntcard'
-removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/twopaco/twopaco-targets.cmake'
-removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/twopaco/twopaco-targets-release.cmake'
-removed directory '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/twopaco'
-removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/libgraphdump.a'
-removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/graphdump/graphdump-targets-release.cmake'
+removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/libtwopaco.a'
 removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/graphdump/graphdump-targets.cmake'
+removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/graphdump/graphdump-targets-release.cmake'
 removed directory '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/graphdump'
 removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/libntcard.a'
-removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/libtwopaco.a'
-removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/libsalmon_core.a'
+removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/twopaco/twopaco-targets-release.cmake'
+removed '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/twopaco/twopaco-targets.cmake'
+removed directory '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib/twopaco'
 removed directory '/build/reproducible-path/salmon-1.10.2+ds1/debian/salmon/usr/lib'
 make[1]: Leaving directory '/build/reproducible-path/salmon-1.10.2+ds1'
    dh_install
    dh_installdocs
    dh_sphinxdoc
+dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/salmon/usr/share/doc/salmon/html/_static/menu.js
 dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/salmon/usr/share/doc/salmon/html/_static/themetoggle.js
-dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/salmon/usr/share/doc/salmon/html/_static/search-focus.js
 dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/salmon/usr/share/doc/salmon/html/_static/copybutton.js
-dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/salmon/usr/share/doc/salmon/html/_static/menu.js
+dh_sphinxdoc: warning: ignoring unknown JavaScript code: debian/salmon/usr/share/doc/salmon/html/_static/search-focus.js
    dh_installchangelogs
    dh_installexamples
    dh_installman
@@ -8467,8 +8503,8 @@
    dh_gencontrol
    dh_md5sums
    dh_builddeb
-dpkg-deb: building package 'salmon' in '../salmon_1.10.2+ds1-1_amd64.deb'.
 dpkg-deb: building package 'salmon-dbgsym' in '../salmon-dbgsym_1.10.2+ds1-1_amd64.deb'.
+dpkg-deb: building package 'salmon' in '../salmon_1.10.2+ds1-1_amd64.deb'.
  dpkg-genbuildinfo --build=binary -O../salmon_1.10.2+ds1-1_amd64.buildinfo
  dpkg-genchanges --build=binary -O../salmon_1.10.2+ds1-1_amd64.changes
 dpkg-genchanges: info: binary-only upload (no source code included)
@@ -8476,12 +8512,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/4080173/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/4080173/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/642106 and its subdirectories
-I: Current time: Thu Apr 16 01:19:56 -12 2026
-I: pbuilder-time-stamp: 1776345596
+I: removing directory /srv/workspace/pbuilder/4080173 and its subdirectories
+I: Current time: Fri Mar 14 21:49:42 +14 2025
+I: pbuilder-time-stamp: 1741938582