Diff of the two buildlogs: -- --- b1/build.log 2025-08-03 14:02:03.699238835 +0000 +++ b2/build.log 2025-08-03 14:11:14.175930407 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Sep 5 08:13:59 -12 2026 -I: pbuilder-time-stamp: 1788639239 +I: Current time: Mon Aug 4 04:02:06 +14 2025 +I: pbuilder-time-stamp: 1754229726 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -43,52 +43,84 @@ dpkg-source: info: applying auto-gitignore I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3515081/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1911356/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 3 14:02 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1911356/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1911356/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='ed513290750b4111ae8b1ffbf5882b2d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3515081' - PS1='# ' - PS2='> ' + INVOCATION_ID=d3a03d1273674cd7a99849b6130fbf40 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1911356 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ltN1axyO/pbuilderrc_YGXl --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ltN1axyO/b1 --logfile b1/build.log sra-sdk_3.2.1+dfsg-4.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ltN1axyO/pbuilderrc_vDrJ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ltN1axyO/b2 --logfile b2/build.log sra-sdk_3.2.1+dfsg-4.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3515081/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1911356/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -504,7 +536,7 @@ Get: 338 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 339 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 340 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] -Fetched 282 MB in 6s (45.4 MB/s) +Fetched 282 MB in 9s (31.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) @@ -1620,8 +1652,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Sep 5 20:17:24 UTC 2026. -Universal Time is now: Sat Sep 5 20:17:24 UTC 2026. +Local time is now: Sun Aug 3 14:03:46 UTC 2025. +Universal Time is now: Sun Aug 3 14:03:46 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -2116,7 +2148,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sra-sdk_3.2.1+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/1911356/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1911356/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sra-sdk_3.2.1+dfsg-4_source.changes dpkg-buildpackage: info: source package sra-sdk dpkg-buildpackage: info: source version 3.2.1+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -2153,7 +2189,7 @@ make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_autoreconf_clean -O--buildsystem=cmake jh_clean -O--buildsystem=cmake -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake \ @@ -2241,8 +2277,8 @@ RE2_FOUND=TRUE --- Configuring done (2.1s) --- Generating done (0.8s) +-- Configuring done (8.4s) +-- Generating done (0.9s) CMake Warning: Manually-specified variables were not used by the project: @@ -2257,9 +2293,9 @@ -- Build files have been written to: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' jh_linkjars -O--buildsystem=cmake -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/sra-sdk-3.2.1+dfsg -B/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -2269,407 +2305,387 @@ make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/depend make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/depend make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/depend -make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/depend -make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/shared /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/shared /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/shared/CMakeFiles/tk-version.dir/DependInfo.cmake "--color=" +make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/depend +make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/depend make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/DependInfo.cmake "--color=" +make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/DependInfo.cmake "--color=" -make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs/CMakeFiles/ngs.dir/DependInfo.cmake "--color=" make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/depend +make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/DependInfo.cmake "--color=" -make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/depend make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/DependInfo.cmake "--color=" make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/depend make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/depend +make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/DependInfo.cmake "--color=" -make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/DependInfo.cmake "--color=" +make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/DependInfo.cmake "--color=" -make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/depend +make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml/CMakeFiles/kxml.dir/DependInfo.cmake "--color=" -make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader/CMakeFiles/loader.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/DependInfo.cmake "--color=" make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/depend -make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader/CMakeFiles/loader.dir/DependInfo.cmake "--color=" +make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/depend make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/depend make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp/CMakeFiles/ascp.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/diagnose /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/diagnose/CMakeFiles/diagnose.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd 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tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search/CMakeFiles/ksrch.dir/DependInfo.cmake "--color=" make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/CMakeFiles/general-writer.dir/DependInfo.cmake "--color=" make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sharq/CMakeFiles/sharq.py.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/schema/CMakeFiles/sra.dir/DependInfo.cmake "--color=" make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/DependInfo.cmake "--color=" make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/DependInfo.cmake "--color=" make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/depend make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui/CMakeFiles/tui.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool/CMakeFiles/sratools.dir/DependInfo.cmake "--color=" make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/DependInfo.cmake "--color=" -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/DependInfo.cmake "--color=" make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build make -f shared/CMakeFiles/tk-version.dir/build.make shared/CMakeFiles/tk-version.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build make -f ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build.make ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build +make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/build -make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build.make ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/build +make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build.make ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build.make ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build.make ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/javadoc -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc -sourcepath "/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java" gov.nih.nlm.ncbi.ngs ngs make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc_javadoc.dir/build +make -f ngs/ncbi/ngs/CMakeFiles/ngs.dir/build.make ngs/ncbi/ngs/CMakeFiles/ngs.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/loader/CMakeFiles/loader.dir/build.make libs/loader/CMakeFiles/loader.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build.make ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/javadoc -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc -sourcepath "/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java" gov.nih.nlm.ncbi.ngs ngs +make -f ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build.make ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-java/CMakeFiles/ngs-java.dir/build.make ngs/ngs-java/CMakeFiles/ngs-java.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/kxml/CMakeFiles/kxml.dir/build.make libs/kxml/CMakeFiles/kxml.dir/build +make -f libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build.make libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build.make libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/build -make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/ascp/CMakeFiles/ascp.dir/build.make libs/ascp/CMakeFiles/ascp.dir/build make -f libs/diagnose/CMakeFiles/diagnose.dir/build.make libs/diagnose/CMakeFiles/diagnose.dir/build make -f libs/schema/CMakeFiles/sra.dir/build.make libs/schema/CMakeFiles/sra.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/general-writer/CMakeFiles/general-writer.dir/build.make libs/general-writer/CMakeFiles/general-writer.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build.make tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/build -make -f tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/sharq/CMakeFiles/sharq.py.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.py.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sharq && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/sharq.py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq.py +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/build make -f tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/external/vdb-config/tui/CMakeFiles/tui.dir/build.make tools/external/vdb-config/tui/CMakeFiles/tui.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sharq && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/sharq.py /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq.py +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/external/driver-tool/CMakeFiles/sratools.dir/build.make tools/external/driver-tool/CMakeFiles/sratools.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build.make tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 0%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_CommandLine.dir/build -[ 0%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -[ 0%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/build +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 0%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_SDLResponse.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 0%] Building C object shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o -[ 0%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -[ 0%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/build [ 0%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o +[ 0%] Building C object ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o +[ 0%] Building C object shared/CMakeFiles/tk-version.dir/toolkit.vers.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadCollectionItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadCollection.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadCollectionItf.cpp -[ 2%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadCollectionItf.cpp -[ 2%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -[ 2%] Building Java objects for ngs-java.jar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupEventItf.cpp -make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build -[ 2%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o +[ 0%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o +[ 0%] 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xml.c.o -MF CMakeFiles/kxml.dir/xml.c.o.d -o CMakeFiles/kxml.dir/xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xml.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -MF CMakeFiles/ngs.dir/NCBI-NGS.c.o.d -o CMakeFiles/ngs.dir/NCBI-NGS.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NCBI-NGS.c -[ 2%] Building C object libs/loader/CMakeFiles/loader.dir/progressbar.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kxml\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -MF CMakeFiles/kxml.dir/xtoc-parsexml.c.o.d -o CMakeFiles/kxml.dir/xtoc-parsexml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc-parsexml.c +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-py\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o -MF CMakeFiles/ngs-py.dir/py_Manager.c.o.d -o CMakeFiles/ngs-py.dir/py_Manager.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py/py_Manager.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -MF CMakeFiles/ngs-jni.dir/jni_String.c.o.d -o CMakeFiles/ngs-jni.dir/jni_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_String.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS +make -f test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build.make test/loaders/bam-load/CMakeFiles/Test_BamLoader_platform.dir/build +[ 0%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceSequenceItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o -MF CMakeFiles/ngs-jni.dir/jni_Manager.c.o.d -o CMakeFiles/ngs-jni.dir/jni_Manager.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_Manager.c +cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/progressbar.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentItf.cpp +[ 1%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadCollection.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -MF CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o.d -o CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_ErrorMsg.c -[ 2%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -[ 2%] Building C object libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -[ 2%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -[ 2%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/progressbar.c.o -MF CMakeFiles/loader.dir/progressbar.c.o.d -o CMakeFiles/loader.dir/progressbar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/progressbar.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReadCollection.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 1%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_FragmentItf.cpp +[ 1%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o +[ 1%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o +[ 1%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentIteratorItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadCollectionItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o -MF CMakeFiles/ngs.dir/NCBI-NGS.c.o.d -o CMakeFiles/ngs.dir/NCBI-NGS.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NCBI-NGS.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadCollectionItf.cpp +[ 1%] Building C object libs/ascp/CMakeFiles/ascp.dir/ascp.c.o +[ 1%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o +[ 1%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o +[ 1%] Building Java objects for ngs-java.jar +[ 1%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadCollectionItf.cpp +[ 1%] Building CXX object libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/ascp.c.o -MF CMakeFiles/ascp.dir/ascp.c.o.d -o CMakeFiles/ascp.dir/ascp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/ascp.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb-sqlite\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS +[ 1%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/diagnose.c.o -MF CMakeFiles/diagnose.dir/diagnose.c.o.d -o CMakeFiles/diagnose.dir/diagnose.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose/diagnose.c -[ 2%] Building CXX object libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o -[ 2%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o -[ 2%] Building CXX object libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o +[ 2%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o +[ 2%] Building C object libs/kxml/CMakeFiles/kxml.dir/xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/schema/CMakeFiles/sra.dir/SraSchema.cpp.o -MF CMakeFiles/sra.dir/SraSchema.cpp.o.d -o CMakeFiles/sra.dir/SraSchema.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema/SraSchema.cpp +[ 2%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o +[ 2%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o +[ 1%] Building CXX object libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -MF CMakeFiles/ksrch.dir/agrep-dp.c.o.d -o CMakeFiles/ksrch.dir/agrep-dp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-dp.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/spot-assembler.c.o -MF CMakeFiles/fastqloader.dir/spot-assembler.c.o.d -o CMakeFiles/fastqloader.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/spot-assembler.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -MF CMakeFiles/general-writer.dir/general-writer.cpp.o.d -o CMakeFiles/general-writer.dir/general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/general-writer.cpp -[ 2%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o [ 2%] Building CXX object tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb-sqlite\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -MF CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o.d -o CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_cpp.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o -MF CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o.d -o CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/checklookup.cpp [ 2%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/sratools.cpp.o -[ 2%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o -[ 2%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/dir_dlg.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/general-writer.cpp.o -MF CMakeFiles/general-writer.dir/general-writer.cpp.o.d -o 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/main.cpp.o -MF CMakeFiles/qa-stats.dir/main.cpp.o.d -o CMakeFiles/qa-stats.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/main.cpp -[ 3%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kxml\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xml.c.o -MF CMakeFiles/kxml.dir/xml.c.o.d -o CMakeFiles/kxml.dir/xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xml.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -MF CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o.d -o CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_cpp.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX 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test/external/driver-tool/CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o -[ 4%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o -[ 4%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -MF CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-build-version.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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test/external/driver-tool/CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o +[ 3%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load/sam-platform.cpp -[ 5%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -MF CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o.d -o CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/utf8-like-int-codec.c [ 5%] Linking C static library ../ilib/libtk-version.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/shared && /usr/bin/cmake -P CMakeFiles/tk-version.dir/cmake_clean_target.cmake -[ 5%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o -MF CMakeFiles/fastqloader.dir/common-writer.c.o.d -o CMakeFiles/fastqloader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/shared && /usr/bin/cmake -E cmake_link_script CMakeFiles/tk-version.dir/link.txt --verbose=1 [ 5%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -MF CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_PileupEvent.c +[ 5%] Building C object libs/loader/CMakeFiles/loader.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-file.c.o -MF CMakeFiles/loader.dir/loader-file.c.o.d -o CMakeFiles/loader.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-file.c [ 5%] Linking C static library ../../../ilib/libngs-py.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -P CMakeFiles/ngs-py.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-py.dir/link.txt --verbose=1 /usr/bin/ar qc ../ilib/libtk-version.a "CMakeFiles/tk-version.dir/toolkit.vers.c.o" /usr/bin/ranlib ../ilib/libtk-version.a -[ 5%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -[ 5%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o +[ 5%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-jni\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o -MF CMakeFiles/ngs-jni.dir/jni_String.c.o.d -o CMakeFiles/ngs-jni.dir/jni_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_String.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlobIterator.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_AlignmentIteratorItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-py && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-py.dir/link.txt --verbose=1 -[ 5%] Building C object libs/loader/CMakeFiles/loader.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-file.c.o -MF CMakeFiles/loader.dir/loader-file.c.o.d -o CMakeFiles/loader.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-file.c [ 5%] Linking CXX static library ../../ilib/libsra.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/cmake -P CMakeFiles/sra.dir/cmake_clean_target.cmake -[ 5%] Linking C static library ../../../ilib/libngs-jni.a -[ 5%] Built target tk-version -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -P CMakeFiles/ngs-jni.dir/cmake_clean_target.cmake /usr/bin/ar qc ../../../ilib/libngs-py.a "CMakeFiles/ngs-py.dir/py_Manager.c.o" /usr/bin/ranlib ../../../ilib/libngs-py.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-jni.dir/link.txt --verbose=1 +[ 5%] Built target tk-version cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra.dir/link.txt --verbose=1 -[ 6%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o -MF CMakeFiles/fastqloader.dir/sequence-writer.c.o.d -o CMakeFiles/fastqloader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c -[ 6%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o +[ 5%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/eventring.c.o -MF CMakeFiles/tui.dir/eventring.c.o.d -o CMakeFiles/tui.dir/eventring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/eventring.c -[ 6%] Built target ngs-py -[ 6%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -/usr/bin/ar qc ../../../ilib/libngs-jni.a "CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "CMakeFiles/ngs-jni.dir/jni_String.c.o" "CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" -/usr/bin/ranlib ../../../ilib/libngs-jni.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp +[ 5%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -MF CMakeFiles/qa-stats.dir/input.cpp.o.d -o CMakeFiles/qa-stats.dir/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp +[ 5%] Built target ngs-py /usr/bin/ar qc ../../ilib/libsra.a CMakeFiles/sra.dir/SraSchema.cpp.o /usr/bin/ranlib ../../ilib/libsra.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 6%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReference.cpp -[ 6%] Built target ngs-jni -[ 6%] Built target sra -[ 6%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/ReferenceBlob.cpp -[ 7%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/ReferenceBlobIterator.cpp -[ 7%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbAlignment.cpp -[ 8%] Building C object libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -Wno-unused-result -MD -MT libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -MF CMakeFiles/ascp.dir/unix/connect.c.o.d -o CMakeFiles/ascp.dir/unix/connect.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/unix/connect.c -[ 8%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o +[ 5%] Built target sra +[ 5%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kxml\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc-parsexml.c.o -MF CMakeFiles/kxml.dir/xtoc-parsexml.c.o.d -o CMakeFiles/kxml.dir/xtoc-parsexml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc-parsexml.c +[ 5%] Building C object libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/kxml\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/libxml2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o -MF CMakeFiles/kxml.dir/xtoc.c.o.d -o CMakeFiles/kxml.dir/xtoc.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc.c +[ 5%] Building C object ngs/ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && 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CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni/jni_ErrorMsg.c +[ 5%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/file_dlg.c.o -MF CMakeFiles/tui.dir/file_dlg.c.o.d -o CMakeFiles/tui.dir/file_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/file_dlg.c -[ 8%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -MF CMakeFiles/tui.dir/line_policy.c.o.d -o CMakeFiles/tui.dir/line_policy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/line_policy.c -[ 8%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o +[ 5%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-writer.c.o -MF CMakeFiles/fastqloader.dir/common-writer.c.o.d -o CMakeFiles/fastqloader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c +[ 5%] Building C object libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/diagnose/CMakeFiles/diagnose.dir/endpoint.c.o -MF CMakeFiles/diagnose.dir/endpoint.c.o.d -o CMakeFiles/diagnose.dir/endpoint.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/diagnose/endpoint.c -[ 8%] Building C object libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o -MF CMakeFiles/ascp.dir/linux/ascp-path.c.o.d -o CMakeFiles/ascp.dir/linux/ascp-path.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/linux/ascp-path.c -[ 9%] Building C object libs/loader/CMakeFiles/loader.dir/loader-meta.c.o +[ 6%] Building C object libs/loader/CMakeFiles/loader.dir/loader-meta.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/loader-meta.c.o -MF CMakeFiles/loader.dir/loader-meta.c.o.d -o CMakeFiles/loader.dir/loader-meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/loader-meta.c -[ 10%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o +[ 7%] Building C object libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -Wno-unused-result -MD -MT libs/ascp/CMakeFiles/ascp.dir/unix/connect.c.o -MF CMakeFiles/ascp.dir/unix/connect.c.o.d -o CMakeFiles/ascp.dir/unix/connect.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/unix/connect.c +[ 8%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o -MF CMakeFiles/ksrch.dir/agrep-myers.c.o.d -o CMakeFiles/ksrch.dir/agrep-myers.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-myers.c -[ 10%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb-sqlite\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3vdb.c -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o +[ 8%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_FragmentIteratorItf.cpp +[ 8%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReferenceIterator.cpp +[ 8%] Building C object libs/loader/CMakeFiles/loader.dir/queue-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/queue-file.c.o -MF CMakeFiles/loader.dir/queue-file.c.o.d -o CMakeFiles/loader.dir/queue-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/queue-file.c +[ 9%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o +[ 9%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PackageItf.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -MF CMakeFiles/ngs.dir/CSRA1_Pileup.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Pileup.c -[ 11%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -MF CMakeFiles/ngs.dir/CSRA1_Alignment.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Alignment.c -[ 11%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp: In member function 'void ncbi::ngs::vdb::FragmentBlob::GetFragmentInfo(uint64_t, std::string*, uint64_t*, uint64_t*, bool*) const': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp:125:24: warning: ignoring return value of 'bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', declared with attribute 'nodiscard' [-Wunused-result] - 125 | fragId . empty (); - | ~~~~~~~~~~~~~~~^~ -In file included from /usr/include/c++/14/string:54, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/ngs/itf/ErrorMsg.hpp:35, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/ngs/ErrorMsg.hpp:31, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/ngs-vdb/FragmentBlob.hpp:30, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp:27: -/usr/include/c++/14/bits/basic_string.h:1231:7: note: declared here - 1231 | empty() const _GLIBCXX_NOEXCEPT - | ^~~~~ +[ 10%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o +[ 10%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/sequence-writer.c.o -MF CMakeFiles/fastqloader.dir/sequence-writer.c.o.d -o CMakeFiles/fastqloader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c +[ 10%] Linking C static library ../../../ilib/libngs-jni.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -P CMakeFiles/ngs-jni.dir/cmake_clean_target.cmake +[ 10%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlobIterator.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/line_policy.c.o -MF CMakeFiles/tui.dir/line_policy.c.o.d -o CMakeFiles/tui.dir/line_policy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/line_policy.c +[ 10%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Reference.cpp +[ 10%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -MF CMakeFiles/tui.dir/screen.c.o.d -o CMakeFiles/tui.dir/screen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/screen.c +[ 10%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupItf.cpp +[ 10%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -MF CMakeFiles/fastqloader.dir/common-reader.c.o.d -o CMakeFiles/fastqloader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-reader.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-jni && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-jni.dir/link.txt --verbose=1 +[ 10%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupIterator.cpp +[ 10%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o +[ 10%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -MF CMakeFiles/ngs.dir/CSRA1_Alignment.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Alignment.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceIteratorItf.cpp +/usr/bin/ar qc ../../../ilib/libngs-jni.a "CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "CMakeFiles/ngs-jni.dir/jni_String.c.o" "CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" +/usr/bin/ranlib ../../../ilib/libngs-jni.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 10%] Built target ngs-jni make -f tools/loaders/sharq/CMakeFiles/sharq.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.dir/depend -[ 11%] Building C object libs/loader/CMakeFiles/loader.dir/queue-file.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sharq/CMakeFiles/sharq.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/queue-file.c.o -MF CMakeFiles/loader.dir/queue-file.c.o.d -o CMakeFiles/loader.dir/queue-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/queue-file.c +[ 10%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventIteratorItf.cpp +[ 11%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventItf.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/sharq/CMakeFiles/sharq.dir/build.make tools/loaders/sharq/CMakeFiles/sharq.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 11%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceSequenceItf.cpp -[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceItf.cpp -[ 11%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceIteratorItf.cpp -[ 11%] Building CXX object tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sharq && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -MF 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceItf.cpp -[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/AlignmentItf.cpp -[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupIteratorItf.cpp -[ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o -MF 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-D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/kxml/CMakeFiles/kxml.dir/xtoc.c.o -MF CMakeFiles/kxml.dir/xtoc.c.o.d -o CMakeFiles/kxml.dir/xtoc.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/kxml/xtoc.c +[ 11%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -MF CMakeFiles/ksrch.dir/agrep-myersunltd.c.o.d -o CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-myersunltd.c In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.cpp:36, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-accession.cpp:39: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': @@ -2679,45 +2695,22 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' 82 | for (auto ext : make_sequence(&extensions[1], 3)) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -[ 12%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/screen.c.o -MF CMakeFiles/tui.dir/screen.c.o.d -o CMakeFiles/tui.dir/screen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/screen.c -Loading source files for package gov.nih.nlm.ncbi.ngs... -Loading source files for package ngs... -[ 12%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/common-reader.c.o -MF CMakeFiles/fastqloader.dir/common-reader.c.o.d -o CMakeFiles/fastqloader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-reader.c -[ 12%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -MF CMakeFiles/ksrch.dir/agrep-myersunltd.c.o.d -o CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-myersunltd.c -[ 12%] Linking C static library ../../ilib/libascp.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cmake -P CMakeFiles/ascp.dir/cmake_clean_target.cmake -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_BamLoader_platform.dir/link.d "CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o" -o ../../../test-bin/Test_BamLoader_platform -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadGroupItf.cpp +[ 11%] Building CXX object tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sharq && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/../../.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/sharq/CMakeFiles/sharq.dir/fastq_parse.cpp.o -MF CMakeFiles/sharq.dir/fastq_parse.cpp.o.d -o CMakeFiles/sharq.dir/fastq_parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_parse.cpp +[ 11%] Building C object libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -MF CMakeFiles/loader.dir/alignment-writer.c.o.d -o CMakeFiles/loader.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/alignment-writer.c +[ 12%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -MF CMakeFiles/tui.dir/string_cache.c.o.d -o CMakeFiles/tui.dir/string_cache.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/string_cache.c [ 12%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -[ 12%] Linking CXX static library ../../../../ilib/libtui_cpp.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui_cpp.dir/cmake_clean_target.cmake +[ 12%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/fastq-reader.c.o -MF CMakeFiles/fastqloader.dir/fastq-reader.c.o.d -o CMakeFiles/fastqloader.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ascp.dir/link.txt --verbose=1 -make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/depend -[ 12%] Building C object libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/DependInfo.cmake "--color=" -make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/alignment-writer.c.o -MF CMakeFiles/loader.dir/alignment-writer.c.o.d -o CMakeFiles/loader.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/alignment-writer.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui_cpp.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 12%] Built target Test_BamLoader_platform -[ 12%] Building C object tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/util\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -MF CMakeFiles/kdbmeta.dir/kdbmeta.c.o.d -o CMakeFiles/kdbmeta.dir/kdbmeta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/kdbmeta/kdbmeta.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -MF CMakeFiles/tui.dir/tui.c.o.d -o CMakeFiles/tui.dir/tui.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui.c +[ 12%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c +[ 12%] Building C object libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/ascp\" -Dx86_64 -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/ascp/CMakeFiles/ascp.dir/linux/ascp-path.c.o -MF CMakeFiles/ascp.dir/linux/ascp-path.c.o.d -o CMakeFiles/ascp.dir/linux/ascp-path.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ascp/linux/ascp-path.c +[ 12%] Linking CXX executable ../../../test-bin/Test_BamLoader_platform +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/bam-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_BamLoader_platform.dir/link.txt --verbose=1 In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.cpp:59: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': @@ -2727,157 +2720,300 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' 82 | for (auto ext : make_sequence(&extensions[1], 3)) { | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -[ 12%] Building CXX object tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/qa-stats/CMakeFiles/qa-stats.dir/input.cpp.o -MF CMakeFiles/qa-stats.dir/input.cpp.o.d -o CMakeFiles/qa-stats.dir/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp -[ 12%] Building C object tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-lock\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o -MF CMakeFiles/vdb-lock.dir/vdb-lock.c.o.d -o CMakeFiles/vdb-lock.dir/vdb-lock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-lock/vdb-lock.c -Constructing Javadoc information... -[ 12%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupIterator.cpp -[ 12%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -MF CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o.d -o CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/NGS-VDB.cpp +[ 12%] Linking C static library ../../ilib/libkxml.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cmake -P CMakeFiles/kxml.dir/cmake_clean_target.cmake +[ 12%] Linking C static library ../../ilib/libascp.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cmake -P CMakeFiles/ascp.dir/cmake_clean_target.cmake +Loading source files for package gov.nih.nlm.ncbi.ngs... +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/kxml.dir/link.txt --verbose=1 +[ 12%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o +[ 12%] Linking CXX static library ../../../../ilib/libtui_cpp.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ascp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ascp.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui_cpp.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -MF CMakeFiles/tui.dir/tui_dlg.c.o.d -o CMakeFiles/tui.dir/tui_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg.c +Loading source files for package ngs... +[ 12%] Building C object libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui_cpp.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/vdb-sqlite && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/vdb-sqlite\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/vdb-sqlite/CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -MF CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o.d -o CMakeFiles/vdb-sqlite.dir/sqlite3vdb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3vdb.c +[ 12%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o +/usr/bin/ar qc ../../ilib/libkxml.a CMakeFiles/kxml.dir/xml.c.o "CMakeFiles/kxml.dir/xtoc-parsexml.c.o" CMakeFiles/kxml.dir/xtoc.c.o +/usr/bin/ranlib ../../ilib/libkxml.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupEventItf.cpp +[ 12%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -MF CMakeFiles/tui.dir/tui_dlg_helper.c.o.d -o CMakeFiles/tui.dir/tui_dlg_helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg_helper.c +[ 12%] Building C object libs/loader/CMakeFiles/loader.dir/common-reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-reader.c.o -MF CMakeFiles/loader.dir/common-reader.c.o.d -o CMakeFiles/loader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-reader.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_BamLoader_platform.dir/link.d "CMakeFiles/Test_BamLoader_platform.dir/sam-platform.cpp.o" -o ../../../test-bin/Test_BamLoader_platform +[ 12%] Built target kxml +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/DependInfo.cmake "--color=" /usr/bin/ar qc ../../ilib/libascp.a CMakeFiles/ascp.dir/ascp.c.o CMakeFiles/ascp.dir/unix/connect.c.o "CMakeFiles/ascp.dir/linux/ascp-path.c.o" /usr/bin/ranlib ../../ilib/libascp.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 13%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/string_cache.c.o -MF CMakeFiles/tui.dir/string_cache.c.o.d -o CMakeFiles/tui.dir/string_cache.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/string_cache.c -[ 13%] Built target ascp +[ 12%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o +[ 12%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Pileup.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c +[ 12%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o /usr/bin/ar qc ../../../../ilib/libtui_cpp.a CMakeFiles/tui_cpp.dir/tui_cpp.cpp.o /usr/bin/ranlib ../../../../ilib/libtui_cpp.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/PileupEventItf.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 12%] Built target ascp +make -f tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build.make tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/build +[ 12%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o -MF CMakeFiles/fastqloader.dir/id2name.c.o.d -o CMakeFiles/fastqloader.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/id2name.c +[ 12%] Built target Test_BamLoader_platform +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/depend +[ 12%] Built target tui_cpp +[ 12%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/DependInfo.cmake "--color=" +[ 12%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceItf.cpp +[ 12%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o +[ 12%] Building C object tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/util\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/kdbmeta/CMakeFiles/kdbmeta.dir/kdbmeta.c.o -MF CMakeFiles/kdbmeta.dir/kdbmeta.c.o.d -o CMakeFiles/kdbmeta.dir/kdbmeta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/kdbmeta/kdbmeta.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -MF CMakeFiles/ksrch.dir/agrep-wumanber.c.o.d -o CMakeFiles/ksrch.dir/agrep-wumanber.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-wumanber.c +[ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupItf.cpp +make -f tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build.make tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 12%] Building C object tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o +[ 12%] Linking CXX executable ../../../test-bin/Test_Drivertool_BuildVersion +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-lock\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-lock/CMakeFiles/vdb-lock.dir/vdb-lock.c.o -MF CMakeFiles/vdb-lock.dir/vdb-lock.c.o.d -o CMakeFiles/vdb-lock.dir/vdb-lock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-lock/vdb-lock.c +[ 12%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_BuildVersion.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbReference.cpp +[ 12%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o +[ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupIteratorItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o -MF CMakeFiles/ksrch.dir/fgrep-aho.c.o.d -o CMakeFiles/ksrch.dir/fgrep-aho.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-aho.c +[ 12%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadCollectionItf.cpp +Constructing Javadoc information... +[ 12%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEventIterator.cpp +[ 12%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReferenceWindow.c +[ 12%] Linking CXX executable ../../../bin/vdb-lock +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-lock.dir/link.txt --verbose=1 +[ 13%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEvent.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_BuildVersion.dir/link.d "CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o" -o ../../../test-bin/Test_Drivertool_BuildVersion +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 14%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceItf.cpp +[ 14%] Building C object libs/loader/CMakeFiles/loader.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-writer.c.o -MF CMakeFiles/loader.dir/common-writer.c.o.d -o CMakeFiles/loader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-writer.c +[ 14%] Built target Test_Drivertool_BuildVersion make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/DependInfo.cmake "--color=" -[ 13%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o +[ 14%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupItf.cpp +[ 14%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -MF CMakeFiles/tui.dir/tui_menu.c.o.d -o CMakeFiles/tui.dir/tui_menu.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_menu.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 14%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -MF CMakeFiles/tui.dir/tui_palette.c.o.d -o CMakeFiles/tui.dir/tui_palette.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_palette.c make -f tools/external/prefetch/CMakeFiles/prefetch.dir/build.make tools/external/prefetch/CMakeFiles/prefetch.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch/CMakeFiles/prefetch.dir/DependInfo.cmake "--color=" -[ 13%] Built target tui_cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Pileup.cpp -[ 13%] Building C object libs/loader/CMakeFiles/loader.dir/common-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-writer.c.o -MF CMakeFiles/loader.dir/common-writer.c.o.d -o CMakeFiles/loader.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-writer.c +[ 14%] Building C object tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-unlock\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -MF CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o.d -o CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-unlock/vdb-unlock.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/external/prefetch/CMakeFiles/prefetch.dir/build.make tools/external/prefetch/CMakeFiles/prefetch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 13%] Building C object libs/loader/CMakeFiles/loader.dir/common-reader.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build.make tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/common-reader.c.o -MF CMakeFiles/loader.dir/common-reader.c.o.d -o CMakeFiles/loader.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/common-reader.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 13%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -[ 13%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupItf.cpp.o -c 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReferenceSequenceItf.cpp -[ 13%] Linking CXX executable ../../../bin/vdb-lock -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-lock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-lock.dir/link.txt --verbose=1 -[ 13%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/vdb-unlock/CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -MF CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o.d -o CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/vdb-unlock/vdb-unlock.c -[ 13%] Linking CXX executable ../../../test-bin/Test_Drivertool_BuildVersion -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_BuildVersion.dir/link.txt --verbose=1 -[ 13%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o -[ 13%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o +[ 14%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/kfile-no-q.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadItf.cpp -[ 13%] Building C object libs/loader/CMakeFiles/loader.dir/mmarray.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui.c.o -MF CMakeFiles/tui.dir/tui.c.o.d -o CMakeFiles/tui.dir/tui.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/FragmentItf.cpp -[ 13%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg.c.o -MF CMakeFiles/tui.dir/tui_dlg.c.o.d -o CMakeFiles/tui.dir/tui_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg.c +[ 14%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -MF CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o.d -o CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-boyermoore.c +[ 14%] Linking CXX executable ../../../test-bin/Test_Drivertool_Accession +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_Accession.dir/link.txt --verbose=1 +[ 14%] Linking CXX executable ../../../bin/vdb-unlock +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-unlock.dir/link.txt --verbose=1 +[ 14%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -MF CMakeFiles/tui.dir/tui_std_dlg.c.o.d -o CMakeFiles/tui.dir/tui_std_dlg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_std_dlg.c +[ 14%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReferenceSequenceItf.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-lock.dir/link.d "CMakeFiles/vdb-lock.dir/vdb-lock.c.o" -o ../../../bin/vdb-lock /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-lock.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-lock vdb-lock.3.2.1 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp: In member function 'void ncbi::ngs::vdb::FragmentBlob::GetFragmentInfo(uint64_t, std::string*, uint64_t*, uint64_t*, bool*) const': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp:125:24: warning: ignoring return value of 'bool std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::empty() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]', declared with attribute 'nodiscard' [-Wunused-result] + 125 | fragId . empty (); + | ~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/14/string:54, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/ngs/itf/ErrorMsg.hpp:35, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/ngs/ErrorMsg.hpp:31, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/ngs-vdb/FragmentBlob.hpp:30, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/FragmentBlob.cpp:27: +/usr/include/c++/14/bits/basic_string.h:1231:7: note: declared here + 1231 | empty() const _GLIBCXX_NOEXCEPT + | ^~~~~ +[ 14%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/AlignmentIterator.cpp +[ 14%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-lock.3.2.1 vdb-lock.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/AlignmentItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-lock.3 vdb-lock +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 14%] Built target vdb-lock make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/fastq-dump.dir/DependInfo.cmake "--color=" -[ 13%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o +[ 14%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfMain.c.o -MF CMakeFiles/prefetch.dir/PrfMain.c.o.d -o CMakeFiles/prefetch.dir/PrfMain.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfMain.c -[ 13%] Linking CXX executable ../../../bin/vdb-unlock -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/vdb-unlock && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-unlock.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build.make tools/external/sra-dump/CMakeFiles/fastq-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-lock.dir/link.d "CMakeFiles/vdb-lock.dir/vdb-lock.c.o" -o ../../../bin/vdb-lock /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-lock.3.2.1 -[ 13%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -MF CMakeFiles/ksrch.dir/agrep-wumanber.c.o.d -o CMakeFiles/ksrch.dir/agrep-wumanber.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/agrep-wumanber.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-lock vdb-lock.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-lock.3.2.1 vdb-lock.3 -[ 13%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o -[ 13%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o -MF CMakeFiles/ksrch.dir/fgrep-aho.c.o.d -o CMakeFiles/ksrch.dir/fgrep-aho.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-aho.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-lock.3 vdb-lock +[ 14%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/factory.c.o -MF CMakeFiles/fastq-dump.dir/factory.c.o.d -o CMakeFiles/fastq-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c +[ 14%] Linking CXX executable ../../../test-bin/Test_Drivertool_UUID +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_UUID.dir/link.txt --verbose=1 +[ 14%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupIteratorItf.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_Accession.dir/link.d "CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o" -o ../../../test-bin/Test_Drivertool_Accession make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_BuildVersion.dir/link.d "CMakeFiles/Test_Drivertool_BuildVersion.dir/test-build-version.cpp.o" -o ../../../test-bin/Test_Drivertool_BuildVersion -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 13%] Built target Test_Drivertool_BuildVersion -[ 13%] Built target vdb-lock -[ 13%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -MF CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o.d -o CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/fgrep-boyermoore.c -[ 13%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEventIterator.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReferenceWindow.c -[ 13%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -[ 13%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventIteratorItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_FragmentIteratorItf.cpp -Creating destination directory: "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/" +[ 14%] Linking C static library ../../../ilib/libfastqloader.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -P CMakeFiles/fastqloader.dir/cmake_clean_target.cmake /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-unlock.dir/link.d "CMakeFiles/vdb-unlock.dir/vdb-unlock.c.o" -o ../../../bin/vdb-unlock /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-unlock.3.2.1 +[ 14%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadItf.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-unlock vdb-unlock.3.2.1 -Building index for all the packages and classes... -Standard Doclet version 21.0.8+9-Debian-1 -Building tree for all the packages and classes... -[ 14%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-unlock.3.2.1 vdb-unlock.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/PileupEvent.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastqloader.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-unlock.3 vdb-unlock +[ 14%] Built target Test_Drivertool_Accession +[ 14%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o +make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -MF CMakeFiles/tui.dir/tui_widget.c.o.d -o CMakeFiles/tui.dir/tui_widget.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/sff-dump.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/build +[ 14%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o [ 14%] Built target vdb-unlock -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Alignment.html... -[ 14%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PackageItf.cpp -[ 14%] Building C object libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReferenceSequenceItf.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 14%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -MF CMakeFiles/tui.dir/tui_widget_button.c.o.d -o CMakeFiles/tui.dir/tui_widget_button.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_button.c [ 14%] Linking CXX executable ../../../bin/kdbmeta -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o -MF CMakeFiles/ksrch.dir/nucstrstr.c.o.d -o CMakeFiles/ksrch.dir/nucstrstr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/kdbmeta && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdbmeta.dir/link.txt --verbose=1 -[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventItf.cpp -[ 15%] Linking CXX static library ../../ilib/libngs-vdb.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -P CMakeFiles/ngs-vdb.dir/cmake_clean_target.cmake -[ 15%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_dlg_helper.c.o -MF CMakeFiles/tui.dir/tui_dlg_helper.c.o.d -o CMakeFiles/tui.dir/tui_dlg_helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_dlg_helper.c -[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -[ 15%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_PileupEventIteratorItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -MF CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o.d -o CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c -[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o -[ 15%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-vdb.dir/link.txt --verbose=1 +[ 14%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -MF CMakeFiles/sff-dump.dir/factory.c.o.d -o CMakeFiles/sff-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c +[ 14%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -MF CMakeFiles/tui.dir/tui_widget_checkbox.c.o.d -o CMakeFiles/tui.dir/tui_widget_checkbox.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_checkbox.c +/usr/bin/ar qc ../../../ilib/libfastqloader.a "CMakeFiles/fastqloader.dir/spot-assembler.c.o" "CMakeFiles/fastqloader.dir/common-writer.c.o" "CMakeFiles/fastqloader.dir/sequence-writer.c.o" "CMakeFiles/fastqloader.dir/common-reader.c.o" "CMakeFiles/fastqloader.dir/fastq-reader.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o" CMakeFiles/fastqloader.dir/id2name.c.o +/usr/bin/ranlib ../../../ilib/libfastqloader.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/depend +[ 14%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/ReferenceBlob.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/illumina-dump.dir/DependInfo.cmake "--color=" +[ 14%] Built target fastqloader +make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/abi-dump.dir/DependInfo.cmake "--color=" +[ 14%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o +[ 14%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadIteratorItf.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_UUID.dir/link.d "CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o" -o ../../../test-bin/Test_Drivertool_UUID +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 14%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -MF CMakeFiles/illumina-dump.dir/factory.c.o.d -o CMakeFiles/illumina-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c +[ 14%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReadCollection.c -[ 15%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -MF CMakeFiles/abi-dump.dir/factory.c.o.d -o CMakeFiles/abi-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c +[ 14%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kdbmeta.3.2.1 +[ 15%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -MF CMakeFiles/tui.dir/tui_widget_inputline.c.o.d -o CMakeFiles/tui.dir/tui_widget_inputline.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_inputline.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kdbmeta kdbmeta.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdbmeta.3.2.1 kdbmeta.3 +[ 15%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -MF CMakeFiles/illumina-dump.dir/fasta_dump.c.o.d -o CMakeFiles/illumina-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdbmeta.3 kdbmeta +[ 16%] Linking C static library ../../ilib/libdiagnose.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cmake -P CMakeFiles/diagnose.dir/cmake_clean_target.cmake +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 16%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/AlignmentItf.cpp +[ 16%] Built target kdbmeta +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cmake -E cmake_link_script CMakeFiles/diagnose.dir/link.txt --verbose=1 +[ 16%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -MF CMakeFiles/tui.dir/tui_widget_label.c.o.d -o CMakeFiles/tui.dir/tui_widget_label.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_label.c +make -f tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build.make tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/DependInfo.cmake "--color=" +Creating destination directory: "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build.make tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 16%] Linking CXX static library ../../ilib/libgeneral-writer.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -P CMakeFiles/general-writer.dir/cmake_clean_target.cmake +[ 16%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o +[ 16%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -MF CMakeFiles/abi-dump.dir/fasta_dump.c.o.d -o CMakeFiles/abi-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadGroupItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroupIterator.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -MF CMakeFiles/prefetch.dir/prefetch.c.o.d -o CMakeFiles/prefetch.dir/prefetch.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/prefetch.c +[ 16%] Building C object libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o +/usr/bin/ar qc ../../ilib/libdiagnose.a CMakeFiles/diagnose.dir/diagnose.c.o CMakeFiles/diagnose.dir/endpoint.c.o +/usr/bin/ranlib ../../ilib/libdiagnose.a /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:140: warning: no comment static int all = primaryAlignment | secondaryAlignment; ^ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o -MF CMakeFiles/ksrch.dir/nucstrstr.c.o.d -o CMakeFiles/ksrch.dir/nucstrstr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:176: warning: no comment static int clipLeft = 0; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:177: warning: no comment +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' static int clipRight = 1; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:132: warning: no comment +[ 17%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceItf.cpp static int maxMapQuality = 8; // pass alignments with mappingQuality <= param ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:131: warning: no comment @@ -2894,55 +3030,90 @@ ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:138: warning: no comment static int primaryAlignment = 1; +[ 17%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:139: warning: no comment static int secondaryAlignment = 2; ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Alignment.java:134: warning: no comment -[ 15%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o static int startWithinSlice = 32; // change slice intersection criteria so that start pos is within slice ^ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StatisticsItf.cpp -[ 15%] Linking CXX executable ../../../test-bin/Test_Drivertool_Accession -[ 15%] Linking C static library ../../ilib/libkxml.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cmake -P CMakeFiles/kxml.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_Accession.dir/link.txt --verbose=1 -[ 15%] Linking CXX executable ../../../test-bin/Test_Drivertool_UUID -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_UUID.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kdbmeta.dir/link.d CMakeFiles/kdbmeta.dir/kdbmeta.c.o -o ../../../bin/kdbmeta /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kdbmeta.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kdbmeta kdbmeta.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/kxml && /usr/bin/cmake -E cmake_link_script CMakeFiles/kxml.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdbmeta.3.2.1 kdbmeta.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdbmeta.3 kdbmeta -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 15%] Built target kdbmeta -/usr/bin/ar qc ../../ilib/libngs-vdb.a "CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o" "CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o" -/usr/bin/ranlib ../../ilib/libngs-vdb.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 15%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -MF CMakeFiles/ngs.dir/CSRA1_Read.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Read.c -[ 15%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/EBI_ReferenceSequence.c -[ 15%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroup.cpp +[ 17%] Built target diagnose +make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sam-dump.dir/DependInfo.cmake "--color=" +[ 17%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o +[ 17%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadIterator.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fasta_dump.c.o -MF CMakeFiles/fastq-dump.dir/fasta_dump.c.o.d -o CMakeFiles/fastq-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c -[ 15%] Built target ngs-vdb -/usr/bin/ar qc ../../ilib/libkxml.a CMakeFiles/kxml.dir/xml.c.o "CMakeFiles/kxml.dir/xtoc-parsexml.c.o" CMakeFiles/kxml.dir/xtoc.c.o -/usr/bin/ranlib ../../ilib/libkxml.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_UUID.dir/link.d "CMakeFiles/Test_Drivertool_UUID.dir/test-uuid.cpp.o" -o ../../../test-bin/Test_Drivertool_UUID +make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ar qc ../../ilib/libgeneral-writer.a "CMakeFiles/general-writer.dir/general-writer.cpp.o" "CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o" +/usr/bin/ranlib ../../ilib/libgeneral-writer.a +[ 18%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 16%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -[ 17%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -[ 17%] Built target Test_Drivertool_UUID -make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/depend -[ 17%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -[ 17%] Built target kxml -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -MF CMakeFiles/sam-dump.dir/inputfiles.c.o.d -o CMakeFiles/sam-dump.dir/inputfiles.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/inputfiles.c +[ 19%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o +[ 19%] Built target general-writer +[ 19%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -MF CMakeFiles/tui.dir/tui_widget_progress.c.o.d -o CMakeFiles/tui.dir/tui_widget_progress.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_progress.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -MF CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o.d -o CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/ReferenceBlobIterator.cpp +[ 19%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o +make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/depend +[ 19%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -MF CMakeFiles/sam-dump.dir/perf_log.c.o.d -o CMakeFiles/sam-dump.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/perf_log.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -MF CMakeFiles/fastq-dump.dir/core.c.o.d -o CMakeFiles/fastq-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/sff-dump.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -MF CMakeFiles/sratools.dir/config.cpp.o.d -o CMakeFiles/sratools.dir/config.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/config.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -MF CMakeFiles/sratools.dir/command-line.cpp.o.d -o CMakeFiles/sratools.dir/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/DependInfo.cmake "--color=" +[ 19%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -MF CMakeFiles/sam-dump.dir/rna_splice_log.c.o.d -o CMakeFiles/sam-dump.dir/rna_splice_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/rna_splice_log.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build +[ 20%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -MF CMakeFiles/sff-dump.dir/fasta_dump.c.o.d -o CMakeFiles/sff-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 20%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceIteratorItf.cpp +[ 20%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-context.c +[ 20%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o +[ 20%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -MF CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o.d -o CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cmdline_cmn.c +Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/AlignmentIterator.html... +ngs/itf/Refcount.java:57: warning: [removal] finalize() in Object has been deprecated and marked for removal + protected void finalize () + ^ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -MF CMakeFiles/illumina-dump.dir/core.c.o.d -o CMakeFiles/illumina-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1011 | ReportBuildDate ( __DATE__ ); + | ^~~~~~~~ +[ 20%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventIteratorItf.cpp +[ 20%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -MF CMakeFiles/tui.dir/tui_widget_radiobox.c.o.d -o CMakeFiles/tui.dir/tui_widget_radiobox.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_radiobox.c +Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ErrorMsg.html... +/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:38: warning: no main description + * @return What went wrong + ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:49: warning: no comment + public ErrorMsg () + ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:53: warning: no comment + public ErrorMsg ( String message ) + ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:58: warning: no comment + public ErrorMsg ( ErrorMsg obj ) + ^ +[ 21%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_PileupEventItf.cpp +[ 21%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -MF CMakeFiles/illumina-dump.dir/illumina.c.o.d -o CMakeFiles/illumina-dump.dir/illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/illumina.c +[ 21%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Read.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Read.cpp +Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Fragment.html... In function 'nss_unary_expr', inlined from 'nss_expr' at /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1415:13: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1387:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] @@ -2984,11 +3155,9 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1301:13: note: object of size 16 allocated by 'malloc' 1301 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1321:29: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1321 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ -make -f tools/external/sra-dump/CMakeFiles/sff-dump.dir/build.make tools/external/sra-dump/CMakeFiles/sff-dump.dir/build /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1316:13: note: object of size 16 allocated by 'malloc' 1316 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -3004,7 +3173,6 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1316:13: note: object of size 16 allocated by 'malloc' 1316 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1348:33: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1348 | e -> sub . type = type_EXPR; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ @@ -3014,9 +3182,6 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1349:31: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[16]' [-Warray-bounds=] 1349 | e -> sub . op = op_TAIL; | ~~~~~~~~~~~~~~^~~~~~~~~ -[ 17%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -[ 17%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -[ 17%] Building C object libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1343:17: note: object of size 16 allocated by 'malloc' 1343 | e = malloc ( sizeof e -> sub ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -3039,68 +3204,19 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by 'malloc' 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/general-writer/CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -MF CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o.d -o CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/utf8-like-int-codec.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -MF CMakeFiles/ngs.dir/SRA_Statistics.c.o.d -o CMakeFiles/ngs.dir/SRA_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Statistics.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1463:19: warning: array subscript 'NucStrExpr {aka NucStrstr}[0]' is partly outside array bounds of 'unsigned char[24]' [-Warray-bounds=] 1463 | e -> boolean . left = * expr; | ^~ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/nucstrstr.c:1454:21: note: object of size 24 allocated by 'malloc' 1454 | e = malloc ( sizeof e -> boolean ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 17%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/factory.c.o -MF CMakeFiles/sff-dump.dir/factory.c.o.d -o CMakeFiles/sff-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/AlignmentIterator.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_Accession.dir/link.d "CMakeFiles/Test_Drivertool_Accession.dir/test-accession.cpp.o" -o ../../../test-bin/Test_Drivertool_Accession -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/AlignmentIterator.html... -[ 17%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/core.c.o -MF CMakeFiles/fastq-dump.dir/core.c.o.d -o CMakeFiles/fastq-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c -[ 18%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -[ 18%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -[ 17%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -[ 17%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -[ 18%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -[ 18%] Built target Test_Drivertool_Accession -[ 18%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_DB_ReadCollection.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/prefetch.c.o -MF CMakeFiles/prefetch.dir/prefetch.c.o.d -o CMakeFiles/prefetch.dir/prefetch.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/prefetch.c -[ 18%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -MF CMakeFiles/fastq-dump.dir/fastq.c.o.d -o CMakeFiles/fastq-dump.dir/fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fastq.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Alignment.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -MF CMakeFiles/sratools.dir/run-source.cpp.o.d -o CMakeFiles/sratools.dir/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroupIterator.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StringItf.cpp -[ 18%] Building C object libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -MF CMakeFiles/loader.dir/reference-writer.c.o.d -o CMakeFiles/loader.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/reference-writer.c -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ErrorMsg.html... -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1011 | ReportBuildDate ( __DATE__ ); - | ^~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:38: warning: no main description - * @return What went wrong - ^ -[ 18%] Building C object libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:49: warning: no comment - public ErrorMsg () - ^ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -MF CMakeFiles/loader.dir/sequence-writer.c.o.d -o CMakeFiles/loader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/sequence-writer.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:53: warning: no comment - public ErrorMsg ( String message ) - ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ErrorMsg.java:58: warning: no comment - public ErrorMsg ( ErrorMsg obj ) - ^ -[ 18%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -MF CMakeFiles/prefetch.dir/PrfRetrier.c.o.d -o CMakeFiles/prefetch.dir/PrfRetrier.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfRetrier.c -[ 18%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -[ 18%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadCollectionItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PileupEventItf.cpp -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Fragment.html... -[ 18%] Building C object libs/search/CMakeFiles/ksrch.dir/search.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/search.c.o -MF CMakeFiles/ksrch.dir/search.c.o.d -o CMakeFiles/ksrch.dir/search.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/search.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/FragmentIterator.html... +[ 21%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -MF CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_ReadCollection.c +[ 21%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -MF CMakeFiles/abi-dump.dir/core.c.o.d -o CMakeFiles/abi-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c +[ 21%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -MF CMakeFiles/sam-dump.dir/sam-dump-opts.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump-opts.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/LibDependencies.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: no comment public class LibDependencies { @@ -3114,64 +3230,54 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java:29: warning: use of default constructor, which does not provide a comment public class LibDependencies { ^ -make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/depend -make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/illumina-dump.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump/CMakeFiles/abi-dump.dir/DependInfo.cmake "--color=" +[ 22%] Building C object tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/fastq-dump.dir/fastq.c.o -MF CMakeFiles/fastq-dump.dir/fastq.c.o.d -o CMakeFiles/fastq-dump.dir/fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fastq.c +[ 22%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1011 | ReportBuildDate ( __DATE__ ); + | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/out_redir.c.o -MF CMakeFiles/sam-dump.dir/out_redir.c.o.d -o CMakeFiles/sam-dump.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/out_redir.c +[ 23%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -MF CMakeFiles/abi-dump.dir/abi.c.o.d -o CMakeFiles/abi-dump.dir/abi.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/abi.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/NGS.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: no comment public class NGS ^ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:40: warning: use of default constructor, which does not provide a comment -make -f tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build.make tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/DependInfo.cmake "--color=" public class NGS ^ -[ 18%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/gov/nih/nlm/ncbi/ngs/NGS.java:133: warning: no comment public static void main(String[] args) { ^ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentIteratorItf.cpp +[ 23%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ReadItf.cpp +[ 24%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/config.cpp.o -MF CMakeFiles/sratools.dir/config.cpp.o.d -o CMakeFiles/sratools.dir/config.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/config.cpp +[ 24%] Linking CXX executable ../../../test-bin/Test_Drivertool_CommandLine +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_CommandLine.dir/link.txt --verbose=1 Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Package.html... -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build.make tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/abi-dump.dir/build.make tools/external/sra-dump/CMakeFiles/abi-dump.dir/build +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1011 | ReportBuildDate ( __DATE__ ); + | ^~~~~~~~ +[ 24%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Package.java:37: warning: no main description * @return package version as a 1..3 part string ^ -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Package.java:33: warning: use of default constructor, which does not provide a comment public class Package ^ -[ 18%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/factory.c.o -MF CMakeFiles/abi-dump.dir/factory.c.o.d -o CMakeFiles/abi-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c -[ 18%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/dyn_string.c.o -MF CMakeFiles/sra-pileup.dir/dyn_string.c.o.d -o CMakeFiles/sra-pileup.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/dyn_string.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/command-line.cpp.o -MF CMakeFiles/sratools.dir/command-line.cpp.o.d -o CMakeFiles/sratools.dir/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Pileup.html... -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build.make tools/external/sra-dump/CMakeFiles/illumina-dump.dir/build /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Pileup.java:58: warning: no main description * @return base at current Reference position ^ -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 18%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -MF CMakeFiles/sratools.dir/uuid.cpp.o.d -o CMakeFiles/sratools.dir/uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/uuid.cpp -[ 19%] Linking CXX executable ../../../../../test-bin/idx-text-checklookup -[ 19%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -[ 19%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -[ 19%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -[ 20%] Linking C static library ../../ilib/libdiagnose.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-checklookup.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -MF CMakeFiles/sratools.dir/proc.cpp.o.d -o CMakeFiles/sratools.dir/proc.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/factory.c.o -MF CMakeFiles/illumina-dump.dir/factory.c.o.d -o CMakeFiles/illumina-dump.dir/factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/factory.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -MF CMakeFiles/sratools.dir/accession.cpp.o.d -o CMakeFiles/sratools.dir/accession.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cmake -P CMakeFiles/diagnose.dir/cmake_clean_target.cmake +[ 24%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/run-source.cpp.o -MF CMakeFiles/sratools.dir/run-source.cpp.o.d -o CMakeFiles/sratools.dir/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp +[ 25%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEvent.html... +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -MF CMakeFiles/sra-pileup.dir/out_redir.c.o.d -o CMakeFiles/sra-pileup.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/out_redir.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:118: warning: no comment static int alignment_minus_strand = 0x20; ^ @@ -3217,20 +3323,19 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/PileupEvent.java:113: warning: no comment static int replacement = insertion_before_deletion; ^ -make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup/CMakeFiles/sam-dump.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/diagnose && /usr/bin/cmake -E cmake_link_script CMakeFiles/diagnose.dir/link.txt --verbose=1 -[ 20%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/fasta_dump.c.o -MF CMakeFiles/illumina-dump.dir/fasta_dump.c.o.d -o CMakeFiles/illumina-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupEventIterator.html... -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build.make tools/external/sra-pileup/CMakeFiles/sam-dump.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 26%] Linking CXX executable ../../../../../test-bin/idx-text-checklookup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-checklookup.dir/link.txt --verbose=1 Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/PileupIterator.html... +[ 26%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadGroupItf.cpp +[ 26%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -MF CMakeFiles/sff-dump.dir/core.c.o.d -o CMakeFiles/sff-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c +[ 26%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -MF CMakeFiles/tui.dir/tui_widget_spin_edit.c.o.d -o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_spin_edit.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Read.html... -[ 21%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/inputfiles.c.o -MF CMakeFiles/sam-dump.dir/inputfiles.c.o.d -o CMakeFiles/sam-dump.dir/inputfiles.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/inputfiles.c +[ 26%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr.c.o -MF CMakeFiles/sam-dump.dir/sam-hdr.c.o.d -o CMakeFiles/sam-dump.dir/sam-hdr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-hdr.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:35: warning: no comment public interface Read ^ @@ -3246,60 +3351,68 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Read.java:80: warning: no comment static int unaligned = 4; ^ -[ 21%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/core.c.o -MF CMakeFiles/illumina-dump.dir/core.c.o.d -o CMakeFiles/illumina-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadCollection.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadCollection.java:88: warning: no main description +[ 26%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o * @param spec the name of a contained read group ^ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentIteratorItf.cpp +[ 26%] Building C object libs/loader/CMakeFiles/loader.dir/mmarray.c.o /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadCollection.java:121: warning: no main description * @param spec the name of a contained Reference ^ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/mmarray.c.o -MF CMakeFiles/loader.dir/mmarray.c.o.d -o CMakeFiles/loader.dir/mmarray.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/mmarray.c +[ 26%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -MF CMakeFiles/sra-pileup.dir/perf_log.c.o.d -o CMakeFiles/sra-pileup.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/perf_log.c +[ 26%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o +[ 26%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Fragment.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -MF CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o.d -o CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/VdbAlignment.cpp +[ 26%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/FragmentIterator.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_CommandLine.dir/link.d "CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o" -o ../../../test-bin/Test_Drivertool_CommandLine +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 26%] Built target Test_Drivertool_CommandLine +make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/DependInfo.cmake "--color=" /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1011 | ReportBuildDate ( __DATE__ ); | ^~~~~~~~ Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroup.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadGroupIterator.html... -/usr/bin/ar qc ../../ilib/libdiagnose.a CMakeFiles/diagnose.dir/diagnose.c.o CMakeFiles/diagnose.dir/endpoint.c.o -/usr/bin/ranlib ../../ilib/libdiagnose.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReadIterator.html... /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/ReadIterator.java:34: warning: no comment +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' public interface ReadIterator ^ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Reference.html... +[ 26%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -MF CMakeFiles/tui.dir/tui_widget_string_list.c.o.d -o CMakeFiles/tui.dir/tui_widget_string_list.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_string_list.c +[ 26%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceSequenceItf.cpp +[ 26%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o +[ 26%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/FragmentItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -MF CMakeFiles/vdb-validate.dir/main.c.o.d -o CMakeFiles/vdb-validate.dir/main.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/main.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/idx-text-checklookup.dir/link.d "CMakeFiles/idx-text-checklookup.dir/idx-text/checklookup.cpp.o" -o ../../../../../test-bin/idx-text-checklookup /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 21%] Linking CXX executable ../../../test-bin/Test_Drivertool_CommandLine -Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Reference.html... -[ 21%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_CommandLine.dir/link.txt --verbose=1 -[ 21%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -MF CMakeFiles/ngs.dir/SRA_Read.c.o.d -o CMakeFiles/ngs.dir/SRA_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Read.c -[ 21%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -[ 21%] Building C object libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o -MF CMakeFiles/sratools.dir/service.cpp.o.d -o CMakeFiles/sratools.dir/service.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/service.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -MF CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o.d -o CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cmdline_cmn.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -MF CMakeFiles/ksrch.dir/sw-search.c.o.d -o CMakeFiles/ksrch.dir/sw-search.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/sw-search.c -[ 21%] Built target diagnose -[ 21%] Built target idx-text-checklookup +[ 26%] Building C object libs/loader/CMakeFiles/loader.dir/reference-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/reference-writer.c.o -MF CMakeFiles/loader.dir/reference-writer.c.o.d -o CMakeFiles/loader.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/reference-writer.c +[ 26%] Built target idx-text-checklookup +make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/depend Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceIterator.html... +[ 26%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/DependInfo.cmake "--color=" Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/ReferenceSequence.html... -[ 21%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/fasta_dump.c.o -MF CMakeFiles/abi-dump.dir/fasta_dump.c.o.d -o CMakeFiles/abi-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c -[ 22%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -[ 22%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -[ 22%] Building C object tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -[ 22%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -[ 22%] Building C object tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o +[ 26%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -MF CMakeFiles/sra-pileup.dir/reref.c.o.d -o CMakeFiles/sra-pileup.dir/reref.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/reref.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/Statistics.html... -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/fasta_dump.c.o -MF CMakeFiles/sff-dump.dir/fasta_dump.c.o.d -o CMakeFiles/sff-dump.dir/fasta_dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/fasta_dump.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/illumina-dump.dir/illumina.c.o -MF CMakeFiles/illumina-dump.dir/illumina.c.o.d -o CMakeFiles/illumina-dump.dir/illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/illumina.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/core.c.o -MF CMakeFiles/abi-dump.dir/core.c.o.d -o CMakeFiles/abi-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -MF CMakeFiles/sratools.dir/json-parse.cpp.o.d -o CMakeFiles/sratools.dir/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/fastqloader.dir/id2name.c.o -MF CMakeFiles/fastqloader.dir/id2name.c.o.d -o CMakeFiles/fastqloader.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/id2name.c -[ 22%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/Refcount.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Statistics.java:41: warning: no comment static int int64 = 2; ^ @@ -3312,649 +3425,299 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/ngs/Statistics.java:42: warning: no comment static int uint64 = 3; ^ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 26%] Building CXX object tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -MF CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o.d -o CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-corrupt.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-summary.html... -[ 22%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadGroup.cpp -[ 22%] Linking C static library ../../ilib/libloader.a Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/gov/nih/nlm/ncbi/ngs/package-tree.html... -make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cmake -P CMakeFiles/loader.dir/cmake_clean_target.cmake Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/package-summary.html... -[ 22%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/perf_log.c.o -MF CMakeFiles/sam-dump.dir/perf_log.c.o.d -o CMakeFiles/sam-dump.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/perf_log.c +[ 26%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/ngs/package-tree.html... -[ 22%] Linking CXX static library ../../ilib/libgeneral-writer.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -P CMakeFiles/general-writer.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StatisticsItf.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/constant-values.html... -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_CommandLine.dir/link.d "CMakeFiles/Test_Drivertool_CommandLine.dir/test-command-line.cpp.o" -o ../../../test-bin/Test_Drivertool_CommandLine -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1011 | ReportBuildDate ( __DATE__ ); - | ^~~~~~~~ -[ 22%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/ReadIterator.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build.make tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-writer.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/loader.dir/link.txt --verbose=1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 22%] Built target Test_Drivertool_CommandLine -[ 22%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-context.c +[ 26%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentItf.cpp +[ 26%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/serialized-form.html... -[ 22%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -[ 22%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/core.c.o -MF CMakeFiles/sff-dump.dir/core.c.o.d -o CMakeFiles/sff-dump.dir/core.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c -[ 22%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -MF CMakeFiles/sff-dump.dir/sff.c.o.d -o CMakeFiles/sff-dump.dir/sff.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/sff.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_menu.c.o -MF CMakeFiles/tui.dir/tui_menu.c.o.d -o CMakeFiles/tui.dir/tui_menu.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_menu.c -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp:51: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -MF CMakeFiles/tui.dir/tui_widget_tabhdr.c.o.d -o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_tabhdr.c +[ 26%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_Refcount.cpp +[ 26%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Statistics.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-tree.html... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index.html... -[ 22%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -[ 22%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -[ 22%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/rna_splice_log.c.o -MF CMakeFiles/sam-dump.dir/rna_splice_log.c.o.d -o CMakeFiles/sam-dump.dir/rna_splice_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/rna_splice_log.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/AlignmentItf.cpp -[ 22%] Linking C static library ../../../ilib/libfastqloader.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -P CMakeFiles/fastqloader.dir/cmake_clean_target.cmake Building index for all classes... Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/allclasses-index.html... -/usr/bin/ar qc ../../ilib/libgeneral-writer.a "CMakeFiles/general-writer.dir/general-writer.cpp.o" "CMakeFiles/general-writer.dir/utf8-like-int-codec.c.o" -/usr/bin/ranlib ../../ilib/libgeneral-writer.a -/usr/bin/ar qc ../../ilib/libloader.a CMakeFiles/loader.dir/progressbar.c.o "CMakeFiles/loader.dir/loader-file.c.o" "CMakeFiles/loader.dir/loader-meta.c.o" "CMakeFiles/loader.dir/queue-file.c.o" "CMakeFiles/loader.dir/alignment-writer.c.o" "CMakeFiles/loader.dir/common-reader.c.o" "CMakeFiles/loader.dir/common-writer.c.o" CMakeFiles/loader.dir/mmarray.c.o "CMakeFiles/loader.dir/reference-writer.c.o" "CMakeFiles/loader.dir/sequence-writer.c.o" -/usr/bin/ranlib ../../ilib/libloader.a Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/allpackages-index.html... -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/index-all.html... -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastqloader.dir/link.txt --verbose=1 -[ 22%] Built target general-writer -[ 22%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -MF CMakeFiles/sratools.dir/SDL-response.cpp.o.d -o CMakeFiles/sratools.dir/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c: In function 'KMain': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/core.c:1011:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1011 | ReportBuildDate ( __DATE__ ); - | ^~~~~~~~ -[ 22%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -[ 22%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_AlignmentItf.cpp +[ 26%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o -MF CMakeFiles/ngs.dir/CSRA1_Read.c.o.d -o CMakeFiles/ngs.dir/CSRA1_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/CSRA1_Read.c +[ 26%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o +[ 26%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.cpp.o -MF CMakeFiles/sratools.dir/proc.cpp.o.d -o CMakeFiles/sratools.dir/proc.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp +[ 27%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/StringRef.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupIteratorItf.cpp +[ 27%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -MF CMakeFiles/vdb-validate.dir/vdb-validate.c.o.d -o CMakeFiles/vdb-validate.dir/vdb-validate.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/vdb-validate.c +[ 27%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/linux/systui.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/linux/systui.c.o -MF CMakeFiles/tui.dir/linux/systui.c.o.d -o CMakeFiles/tui.dir/linux/systui.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/linux/systui.c +[ 27%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -MF CMakeFiles/vdb-validate.dir/check-redact.c.o.d -o CMakeFiles/vdb-validate.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-redact.c Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/search.html... -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Read.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Read.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Read.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/overview-summary.html... +[ 27%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadItf.cpp Generating /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc/help-doc.html... -[ 22%] Built target loader -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.cpp:36: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp: In function 'void printEnvironment(bool)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:68:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 68 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:68:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' - 68 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp: In function 'std::ostream& jsonPrintEnvVars(std::ostream&)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:183:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 183 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:183:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' - 183 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp: In function 'void testing_5()': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:228:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 228 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:228:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' - 228 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 22%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/FragmentIterator.cpp 52 warnings -[ 22%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -[ 23%] Building C object tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -MF CMakeFiles/sratools.dir/tool-args.cpp.o.d -o CMakeFiles/sratools.dir/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/abi-dump.dir/abi.c.o -MF CMakeFiles/abi-dump.dir/abi.c.o.d -o CMakeFiles/abi-dump.dir/abi.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/abi.c -[ 23%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupIteratorItf.cpp -[ 23%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -[ 24%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadGroupItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/out_redir.c.o -MF CMakeFiles/sra-pileup.dir/out_redir.c.o.d -o CMakeFiles/sra-pileup.dir/out_redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/out_redir.c -[ 25%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroup.c -[ 25%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -/usr/bin/ar qc ../../../ilib/libfastqloader.a "CMakeFiles/fastqloader.dir/spot-assembler.c.o" "CMakeFiles/fastqloader.dir/common-writer.c.o" "CMakeFiles/fastqloader.dir/sequence-writer.c.o" "CMakeFiles/fastqloader.dir/common-reader.c.o" "CMakeFiles/fastqloader.dir/fastq-reader.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-grammar.c.o" "CMakeFiles/fastqloader.dir/zz_fastq-lex.c.o" CMakeFiles/fastqloader.dir/id2name.c.o -/usr/bin/ranlib ../../../ilib/libfastqloader.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadGroupItf.cpp -[ 25%] Built target ngs-doc_javadoc -[ 25%] Built target fastqloader -[ 25%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadCollection.c -[ 25%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroupInfo.c -[ 25%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_palette.c.o -[ 25%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX 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tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump-opts.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o -c 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/perf_log.c.o -MF CMakeFiles/sra-pileup.dir/perf_log.c.o.d -o CMakeFiles/sra-pileup.dir/perf_log.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/perf_log.c -[ 25%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -[ 25%] Linking C static library ../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadIteratorItf.cpp -[ 25%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cmake -P CMakeFiles/ksrch.dir/cmake_clean_target.cmake -cd 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CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadGroupIteratorItf.cpp -[ 25%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_std_dlg.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/Fragment.cpp -[ 26%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/ErrBlock.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksrch.dir/link.txt --verbose=1 -[ 26%] Linking CXX executable ../../../bin/illumina-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/reref.c.o -MF CMakeFiles/sra-pileup.dir/reref.c.o.d -o CMakeFiles/sra-pileup.dir/reref.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/reref.c -make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/depend -/usr/bin/ar qc ../../ilib/libksrch.a "CMakeFiles/ksrch.dir/agrep-dp.c.o" "CMakeFiles/ksrch.dir/agrep-myers.c.o" "CMakeFiles/ksrch.dir/agrep-myersunltd.c.o" "CMakeFiles/ksrch.dir/agrep-wumanber.c.o" "CMakeFiles/ksrch.dir/fgrep-aho.c.o" "CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o" "CMakeFiles/ksrch.dir/fgrep-dumb.c.o" CMakeFiles/ksrch.dir/nucstrstr.c.o CMakeFiles/ksrch.dir/search.c.o "CMakeFiles/ksrch.dir/sw-search.c.o" -/usr/bin/ranlib ../../ilib/libksrch.a -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make 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tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -MF CMakeFiles/ngs-disp.dir/ReadItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ReadItf.cpp +[ 27%] Building C object libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o +[ 27%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/loader/CMakeFiles/loader.dir/sequence-writer.c.o -MF CMakeFiles/loader.dir/sequence-writer.c.o.d -o CMakeFiles/loader.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/loader/sequence-writer.c +[ 27%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-hdr1.c.o +[ 27%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux 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-I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/EBI_ReferenceSequence.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb 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CMakeFiles/sff-dump.dir/link.txt --verbose=1 -[ 26%] Built target ksrch -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build.make tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build.make tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 26%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -[ 26%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -[ 26%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -[ 26%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/matecache.c.o -MF CMakeFiles/sam-dump.dir/matecache.c.o.d -o CMakeFiles/sam-dump.dir/matecache.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/matecache.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReferenceSequence.c -[ 26%] Building CXX object tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -MF CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o.d -o CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-corrupt.cpp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3DefaultRowEst': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] -102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); - | ^~ -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:11540: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' -102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); - | ^~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/main.c.o -MF CMakeFiles/vdb-validate.dir/main.c.o.d -o CMakeFiles/vdb-validate.dir/main.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/main.c -[ 26%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/vdb-validate.c.o -MF CMakeFiles/vdb-validate.dir/vdb-validate.c.o.d -o CMakeFiles/vdb-validate.dir/vdb-validate.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/vdb-validate.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] -102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); - | ^~ +[ 27%] Building CXX object libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o +[ 27%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o +[ 27%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o +[ 27%] Built target ngs-doc_javadoc +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT libs/ngs-vdb/CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -MF CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o.d -o CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/NGS-VDB.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -MF CMakeFiles/sra-pileup.dir/cg_tools.c.o.d -o CMakeFiles/sra-pileup.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cg_tools.c make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadIteratorItf.cpp +[ 27%] Linking CXX executable ../../../bin/abi-dump make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/DependInfo.cmake "--color=" -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' -102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); - | ^~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/illumina-dump.dir/link.d "CMakeFiles/illumina-dump.dir/factory.c.o" "CMakeFiles/illumina-dump.dir/fasta_dump.c.o" "CMakeFiles/illumina-dump.dir/core.c.o" "CMakeFiles/illumina-dump.dir/illumina.c.o" -o ../../../bin/illumina-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 26%] Linking CXX executable ../../../bin/fastq-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f illumina-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-dump.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv illumina-dump illumina-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-dump.3.2.1 illumina-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-dump.3 illumina-dump -[ 26%] Linking CXX executable ../../../bin/abi-dump cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-dump.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 28%] Linking C static library ../../../../ilib/libtui.a +[ 28%] Building CXX object ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/adapter/CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -MF CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/adapter/StringItf.cpp +[ 28%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o +[ 28%] Linking CXX executable ../../../bin/illumina-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StringItf.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-dump.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 26%] Built target illumina-dump -[ 26%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui.dir/link.txt --verbose=1 +[ 28%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -MF CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o.d -o CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/vdb-decrypt.c -[ 26%] Building C object tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-validate/CMakeFiles/vdb-validate.dir/check-redact.c.o -MF CMakeFiles/vdb-validate.dir/check-redact.c.o.d -o CMakeFiles/vdb-validate.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate/check-redact.c -[ 26%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -MF CMakeFiles/vdb-decrypt.dir/shared.c.o.d -o CMakeFiles/vdb-decrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/shared.c -[ 26%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget.c.o -MF CMakeFiles/tui.dir/tui_widget.c.o.d -o CMakeFiles/tui.dir/tui_widget.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget.c -[ 26%] Linking CXX static library ../../../ilib/libngs-adapt-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -P CMakeFiles/ngs-adapt-c++.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-adapt-c++.dir/link.txt --verbose=1 -[ 26%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -[ 26%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -[ 26%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -[ 26%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sff-dump.dir/link.d "CMakeFiles/sff-dump.dir/factory.c.o" "CMakeFiles/sff-dump.dir/fasta_dump.c.o" "CMakeFiles/sff-dump.dir/core.c.o" "CMakeFiles/sff-dump.dir/sff.c.o" -o ../../../bin/sff-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 26%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_FragmentItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_StatisticsItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_button.c.o -MF CMakeFiles/tui.dir/tui_widget_button.c.o.d -o CMakeFiles/tui.dir/tui_widget_button.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_button.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -MF CMakeFiles/ngs.dir/NGS_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadCollection.c -[ 26%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sff-dump.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastq-dump.dir/link.d "CMakeFiles/fastq-dump.dir/factory.c.o" "CMakeFiles/fastq-dump.dir/fasta_dump.c.o" "CMakeFiles/fastq-dump.dir/core.c.o" "CMakeFiles/fastq-dump.dir/fastq.c.o" -o ../../../bin/fastq-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/FragmentItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f fastq-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sff-dump sff-dump.3.2.1 -[ 26%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -MF CMakeFiles/ngs.dir/NGS_Statistics.c.o.d -o CMakeFiles/ngs.dir/NGS_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Statistics.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv fastq-dump fastq-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-dump.3.2.1 sff-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-dump.3 sff-dump -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-dump.3.2.1 fastq-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-dump.3 fastq-dump -[ 26%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 fastq-dump-driver -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/cg_tools.c.o -MF CMakeFiles/sra-pileup.dir/cg_tools.c.o.d -o CMakeFiles/sra-pileup.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cg_tools.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f abi-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv abi-dump abi-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-dump.3.2.1 abi-dump.3 -[ 26%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/report_deletes.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-dump.3 abi-dump +[ 28%] Building C object libs/search/CMakeFiles/ksrch.dir/search.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -MF CMakeFiles/sra-pileup.dir/ref_regions.c.o.d -o CMakeFiles/sra-pileup.dir/ref_regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_regions.c -[ 26%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/4na_ascii.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX 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deprecated API. -Note: Recompile with -Xlint:deprecation for details. -1 warning -[ 26%] Built target sff-dump -[ 26%] Built target abi-dump -[ 26%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -MF CMakeFiles/ngs.dir/NGS_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_PileupEvent.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_checkbox.c.o -MF CMakeFiles/tui.dir/tui_widget_checkbox.c.o.d -o CMakeFiles/tui.dir/tui_widget_checkbox.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_checkbox.c -[ 27%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_grid.c.o -MF CMakeFiles/tui.dir/tui_widget_grid.c.o.d -o CMakeFiles/tui.dir/tui_widget_grid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_grid.c -[ 27%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/read_fkt.c.o -MF CMakeFiles/sam-dump.dir/read_fkt.c.o.d -o CMakeFiles/sam-dump.dir/read_fkt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/read_fkt.c -[ 29%] Building CXX object ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -[ 29%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -[ 29%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -[ 29%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -MF CMakeFiles/sratools.dir/build-version.cpp.o.d -o CMakeFiles/sratools.dir/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker_0.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_walker_0.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReadIteratorItf.cpp -[ 29%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -MF CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o.d -o CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/c++/StringRef.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ 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-rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceItf.cpp -[ 30%] Linking CXX executable ../../../test-bin/Test_Drivertool_JsonParsing -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_JsonParsing.dir/link.txt --verbose=1 -[ 30%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_ReferenceSequenceItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_compiled_ngs-java -[ 30%] Generating CMakeFiles/ngs-java.dir/java_class_filelist -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake -[ 31%] Creating Java archive ngs-java.jar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar @java_class_filelist -/usr/bin/ar qc ../../../ilib/libngs-adapt-c++.a "CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o" -/usr/bin/ranlib ../../../ilib/libngs-adapt-c++.a +/usr/bin/ar qc ../../../../ilib/libtui.a CMakeFiles/tui.dir/dir_dlg.c.o CMakeFiles/tui.dir/eventring.c.o CMakeFiles/tui.dir/file_dlg.c.o CMakeFiles/tui.dir/line_policy.c.o CMakeFiles/tui.dir/screen.c.o CMakeFiles/tui.dir/string_cache.c.o CMakeFiles/tui.dir/tui.c.o CMakeFiles/tui.dir/tui_dlg.c.o CMakeFiles/tui.dir/tui_dlg_helper.c.o CMakeFiles/tui.dir/tui_menu.c.o CMakeFiles/tui.dir/tui_palette.c.o CMakeFiles/tui.dir/tui_std_dlg.c.o CMakeFiles/tui.dir/tui_widget.c.o CMakeFiles/tui.dir/tui_widget_button.c.o CMakeFiles/tui.dir/tui_widget_checkbox.c.o CMakeFiles/tui.dir/tui_widget_grid.c.o CMakeFiles/tui.dir/tui_widget_inputline.c.o CMakeFiles/tui.dir/tui_widget_label.c.o CMakeFiles/tui.dir/tui_widget_progress.c.o CMakeFiles/tui.dir/tui_widget_radiobox.c.o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o CMakeFiles/tui.dir/tui_widget_string_list.c.o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o CMakeFiles/tui.dir/linux/systui.c.o +/usr/bin/ranlib ../../../../ilib/libtui.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 29%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-tools.c +[ 29%] Built target tui make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/DependInfo.cmake "--color=" +[ 29%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build.make tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-decrypt.dir/shared.c.o -MF CMakeFiles/vdb-decrypt.dir/shared.c.o.d -o CMakeFiles/vdb-decrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/shared.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 31%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StatisticsItf.cpp -[ 31%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -[ 31%] Built target ngs-adapt-c++ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/abi-dump.dir/link.d "CMakeFiles/abi-dump.dir/factory.c.o" "CMakeFiles/abi-dump.dir/fasta_dump.c.o" "CMakeFiles/abi-dump.dir/core.c.o" "CMakeFiles/abi-dump.dir/abi.c.o" -o ../../../bin/abi-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f abi-dump.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/illumina-dump.dir/link.d "CMakeFiles/illumina-dump.dir/factory.c.o" "CMakeFiles/illumina-dump.dir/fasta_dump.c.o" "CMakeFiles/illumina-dump.dir/core.c.o" "CMakeFiles/illumina-dump.dir/illumina.c.o" -o ../../../bin/illumina-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 29%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -MF CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o.d -o CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/vdb-encrypt.c -[ 32%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o -MF CMakeFiles/sam-dump.dir/sam-aligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-aligned.c -[ 33%] Linking CXX executable ../../../bin/prefetch -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/prefetch.dir/link.txt --verbose=1 -[ 33%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_JsonParsing.dir/link.d "CMakeFiles/Test_Drivertool_JsonParsing.dir/test-json-parse.cpp.o" -o ../../../test-bin/Test_Drivertool_JsonParsing -[ 33%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -MF CMakeFiles/ngs.dir/NGS_Pileup.c.o.d -o CMakeFiles/ngs.dir/NGS_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Pileup.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -MF CMakeFiles/ngs.dir/NGS_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadGroup.c -[ 33%] Linking CXX executable ../../../bin/vdb-decrypt -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-decrypt.dir/link.txt --verbose=1 -[ 33%] Built target Test_Drivertool_JsonParsing -[ 33%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_inputline.c.o -MF CMakeFiles/tui.dir/tui_widget_inputline.c.o.d -o CMakeFiles/tui.dir/tui_widget_inputline.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_inputline.c -[ 33%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f illumina-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv abi-dump abi-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv illumina-dump illumina-dump.3.2.1 +[ 29%] Building C object tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-dump.3.2.1 abi-dump.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-dump.3 abi-dump +[ 29%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-dump.3.2.1 illumina-dump.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o -MF CMakeFiles/ngs.dir/SRA_Statistics.c.o.d -o CMakeFiles/ngs.dir/SRA_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Statistics.c +Note: Some input files use or override a deprecated API. cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-decrypt\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-decrypt/CMakeFiles/vdb-encrypt.dir/shared.c.o -MF CMakeFiles/vdb-encrypt.dir/shared.c.o.d -o CMakeFiles/vdb-encrypt.dir/shared.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-decrypt/shared.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-decrypt.dir/link.d "CMakeFiles/vdb-decrypt.dir/vdb-decrypt.c.o" "CMakeFiles/vdb-decrypt.dir/shared.c.o" -o ../../../bin/vdb-decrypt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/prefetch.dir/link.d "CMakeFiles/prefetch.dir/kfile-no-q.c.o" CMakeFiles/prefetch.dir/PrfMain.c.o CMakeFiles/prefetch.dir/prefetch.c.o CMakeFiles/prefetch.dir/PrfRetrier.c.o CMakeFiles/prefetch.dir/PrfOutFile.c.o -o ../../../bin/prefetch ../../../ilib/libascp.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-decrypt.3.2.1 -make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f prefetch.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-decrypt vdb-decrypt.3.2.1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath/CMakeFiles/srapath.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv prefetch prefetch.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-decrypt.3.2.1 vdb-decrypt.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s prefetch.3.2.1 prefetch.3 -[ 33%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -[ 33%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -[ 33%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -MF CMakeFiles/sratools.dir/file-path.posix.cpp.o.d -o CMakeFiles/sratools.dir/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -MF CMakeFiles/sam-dump.dir/sam-unaligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-unaligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-unaligned.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_Refcount.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 33%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -[ 33%] Building CXX object ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -[ 34%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s prefetch.3 prefetch -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-decrypt.3 vdb-decrypt -[ 36%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -[ 36%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -[ 37%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o -[ 34%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -[ 34%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -[ 37%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_walker.c -[ 34%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/StringItf.cpp -[ 37%] Built target ngs-java -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 prefetch-driver -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-py -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -MF CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o.d -o CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/python/py_StringItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_label.c.o -MF CMakeFiles/tui.dir/tui_widget_label.c.o.d -o CMakeFiles/tui.dir/tui_widget_label.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_label.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -MF CMakeFiles/sratools.dir/proc.posix.cpp.o.d -o CMakeFiles/sratools.dir/proc.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.posix.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 29%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -MF CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/FragmentItf.cpp +Note: Recompile with -Xlint:deprecation for details. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PackageItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PackageItf.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -MF CMakeFiles/ngs.dir/NGS_Alignment.c.o.d -o CMakeFiles/ngs.dir/NGS_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Alignment.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Package.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o -MF CMakeFiles/srapath.dir/helper.c.o.d -o CMakeFiles/srapath.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/helper.c -[ 37%] Linking CXX static library ../../../../ilib/libngs-bind-c++.a -[ 37%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -[ 37%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -MF CMakeFiles/ngs-disp.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-disp.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/Refcount.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. 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tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat/CMakeFiles/sra-stat.dir/DependInfo.cmake "--color=" -[ 37%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_progress.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 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Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -[ 38%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -[ 38%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -[ 38%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -/usr/bin/ar qc ../../../../ilib/libngs-bind-c++.a "CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_String.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -MF CMakeFiles/sam-dump.dir/md_flag.c.o.d -o CMakeFiles/sam-dump.dir/md_flag.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/md_flag.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -MF CMakeFiles/sra-pileup.dir/pileup_counters.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_counters.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_counters.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -MF CMakeFiles/ngs.dir/NGS_Read.c.o.d -o CMakeFiles/ngs.dir/NGS_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Read.c +1 warning +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-dump.3 illumina-dump +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp:51: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrBlock.cpp +[ 29%] Built target abi-dump +make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 38%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o -MF CMakeFiles/sra-stat.dir/assembly-statistics.c.o.d -o CMakeFiles/sra-stat.dir/assembly-statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/assembly-statistics.c -[ 38%] Built target ngs-bind-c++ -[ 38%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -MF CMakeFiles/ngs.dir/NGS_Fragment.c.o.d -o CMakeFiles/ngs.dir/NGS_Fragment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Fragment.c -[ 38%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_radiobox.c.o -MF CMakeFiles/tui.dir/tui_widget_radiobox.c.o.d -o CMakeFiles/tui.dir/tui_widget_radiobox.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_radiobox.c -[ 38%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/line_iter.c.o -MF CMakeFiles/srapath.dir/line_iter.c.o.d -o CMakeFiles/srapath.dir/line_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/line_iter.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath/CMakeFiles/srapath.dir/DependInfo.cmake "--color=" +[ 29%] Linking C static library ../../ilib/libloader.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cmake -P CMakeFiles/loader.dir/cmake_clean_target.cmake +[ 29%] Built target illumina-dump make -f tools/external/rcexplain/CMakeFiles/rcexplain.dir/build.make tools/external/rcexplain/CMakeFiles/rcexplain.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/rcexplain /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain/CMakeFiles/rcexplain.dir/DependInfo.cmake "--color=" -[ 38%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-formats.c -[ 38%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -MF CMakeFiles/sam-dump.dir/cg_tools.c.o.d -o CMakeFiles/sam-dump.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cg_tools.c -[ 38%] Linking CXX executable ../../../bin/vdb-encrypt -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-decrypt && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-encrypt.dir/link.txt --verbose=1 -[ 38%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -MF CMakeFiles/ngs.dir/NGS_Cursor.c.o.d -o CMakeFiles/ngs.dir/NGS_Cursor.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Cursor.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/srapath/CMakeFiles/srapath.dir/build.make tools/external/srapath/CMakeFiles/srapath.dir/build +[ 29%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/uuid.cpp.o -MF CMakeFiles/sratools.dir/uuid.cpp.o.d -o CMakeFiles/sratools.dir/uuid.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/uuid.cpp +[ 29%] Building C object tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-dump/CMakeFiles/sff-dump.dir/sff.c.o -MF CMakeFiles/sff-dump.dir/sff.c.o.d -o CMakeFiles/sff-dump.dir/sff.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-dump/sff.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/loader.dir/link.txt --verbose=1 +[ 29%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir/java_compiled_ngs-java +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_regions.c.o -MF CMakeFiles/sra-pileup.dir/ref_regions.c.o.d -o CMakeFiles/sra-pileup.dir/ref_regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_regions.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/external/rcexplain/CMakeFiles/rcexplain.dir/build.make tools/external/rcexplain/CMakeFiles/rcexplain.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 38%] Building C object tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o +[ 29%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/helper.c.o -MF CMakeFiles/srapath.dir/helper.c.o.d -o CMakeFiles/srapath.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/helper.c +[ 29%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ReadItf.cpp +[ 29%] Building C object tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/util\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/rcexplain/CMakeFiles/rcexplain.dir/rcexplain.c.o -MF CMakeFiles/rcexplain.dir/rcexplain.c.o.d -o CMakeFiles/rcexplain.dir/rcexplain.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/rcexplain/rcexplain.c -[ 38%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o -MF CMakeFiles/srapath.dir/repository-mgr.c.o.d -o CMakeFiles/srapath.dir/repository-mgr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/repository-mgr.c -[ 38%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-redir.c -[ 39%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -[ 39%] Linking CXX executable ../../../bin/vdb-validate -[ 39%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -[ 39%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-fastq.c -[ 39%] Linking CXX static library ../../../../ilib/libngs-bind-python.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-validate.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -MF CMakeFiles/tui.dir/tui_widget_spin_edit.c.o.d -o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_spin_edit.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -P CMakeFiles/ngs-bind-python.dir/cmake_clean_target.cmake +[ 29%] Generating CMakeFiles/ngs-java.dir/java_class_filelist +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake +[ 29%] Building C object libs/search/CMakeFiles/ksrch.dir/sw-search.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -MF CMakeFiles/ksrch.dir/sw-search.c.o.d -o CMakeFiles/ksrch.dir/sw-search.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/search/sw-search.c +/usr/bin/ar qc ../../ilib/libloader.a CMakeFiles/loader.dir/progressbar.c.o "CMakeFiles/loader.dir/loader-file.c.o" "CMakeFiles/loader.dir/loader-meta.c.o" "CMakeFiles/loader.dir/queue-file.c.o" "CMakeFiles/loader.dir/alignment-writer.c.o" "CMakeFiles/loader.dir/common-reader.c.o" "CMakeFiles/loader.dir/common-writer.c.o" CMakeFiles/loader.dir/mmarray.c.o "CMakeFiles/loader.dir/reference-writer.c.o" "CMakeFiles/loader.dir/sequence-writer.c.o" +/usr/bin/ranlib ../../ilib/libloader.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 29%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-str.c +[ 29%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function 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-I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/align-info/CMakeFiles/align-info.dir/align-info.c.o -MF CMakeFiles/align-info.dir/align-info.c.o.d -o CMakeFiles/align-info.dir/align-info.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/align-info/align-info.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-encrypt.dir/link.d "CMakeFiles/vdb-encrypt.dir/vdb-encrypt.c.o" "CMakeFiles/vdb-encrypt.dir/shared.c.o" -o ../../../bin/vdb-encrypt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-encrypt.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-encrypt vdb-encrypt.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-encrypt.3.2.1 vdb-encrypt.3 -[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 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tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -[ 39%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT 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ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrorMsg.cpp -[ 39%] Linking CXX executable ../../../bin/rcexplain -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain && /usr/bin/cmake -E cmake_link_script CMakeFiles/rcexplain.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-encrypt.3 vdb-encrypt -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 39%] Built target vdb-encrypt -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/check-corrupt.dir/link.d "CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o" -o ../../../bin/check-corrupt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f check-corrupt.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv check-corrupt check-corrupt.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-corrupt.3.2.1 check-corrupt.3 -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c: In function 'print_results': -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-validate.dir/link.d "CMakeFiles/vdb-validate.dir/main.c.o" "CMakeFiles/vdb-validate.dir/vdb-validate.c.o" "CMakeFiles/vdb-validate.dir/check-redact.c.o" -o ../../../bin/vdb-validate /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -[ 39%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c:3263:22: warning: unused variable 'rc_fmt' [-Wunused-variable] - 3263 | rc_t rc_fmt = formatLoadTime(ctx->info->loadTimestamp, buf, sizeof(buf), &sz); - | ^~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-corrupt.3 check-corrupt -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -MF CMakeFiles/sam-dump.dir/sam-dump.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-validate.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_string_list.c.o -MF CMakeFiles/tui.dir/tui_widget_string_list.c.o.d -o CMakeFiles/tui.dir/tui_widget_string_list.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_string_list.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -MF CMakeFiles/sam-dump.dir/sam-dump3.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-validate vdb-validate.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-validate.3.2.1 vdb-validate.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-validate.3 vdb-validate -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 39%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -[ 39%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Refcount.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -MF CMakeFiles/vdb-dump.dir/vdb_info.c.o.d -o CMakeFiles/vdb-dump.dir/vdb_info.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb_info.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -MF CMakeFiles/sra-pileup.dir/pileup_indels.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_indels.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_indels.c -[ 39%] Built target check-corrupt -[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -MF CMakeFiles/sam-dump.dir/dyn_string.c.o.d -o CMakeFiles/sam-dump.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/dyn_string.c -[ 39%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"libs/tui\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/.. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/tui/CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -MF CMakeFiles/tui.dir/tui_widget_tabhdr.c.o.d -o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/tui/tui_widget_tabhdr.c -[ 39%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ErrorMsg.cpp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c: In function 'KMain': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c:557:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 557 | ReportBuildDate( __DATE__ ); - | ^~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c: In function 'SAM_Dump_Main': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c:4387:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 4387 | ReportBuildDate( __DATE__ ); - | ^~~~~~~~ -[ 39%] Built target vdb-validate +[ 30%] Linking CXX static library ../../../../ilib/libngs-bind-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/cmake -P CMakeFiles/ngs-bind-c++.dir/cmake_clean_target.cmake +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp: In function 'void printEnvironment(bool)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:68:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 68 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:68:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' + 68 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 30%] Linking CXX executable ../../../bin/sff-dump +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp: In function 'std::ostream& jsonPrintEnvVars(std::ostream&)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:183:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 183 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:183:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' + 183 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp: In function 'void testing_5()': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:228:93: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 228 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.cpp:228:35: note: the temporary was destroyed at the end of the full expression 'make_sequence(constants::env_var::names(), ((size_t)constants::env_var::END_ENUM))' + 228 | for (auto name : make_sequence(constants::env_var::names(), constants::env_var::END_ENUM)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-c++.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-dump.dir/link.txt --verbose=1 +[ 30%] Linking CXX executable ../../../bin/rcexplain make -f tools/external/test-sra/CMakeFiles/test-sra.dir/build.make tools/external/test-sra/CMakeFiles/test-sra.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/rcexplain && /usr/bin/cmake -E cmake_link_script CMakeFiles/rcexplain.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/test-sra 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-Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump.c -[ 39%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -MF CMakeFiles/ngs.dir/NGS_String.c.o.d -o CMakeFiles/ngs.dir/NGS_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_String.c -[ 39%] Building C object tools/external/vdb-config/tui/CMakeFiles/tui.dir/linux/systui.c.o -[ 39%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -MF CMakeFiles/ngs.dir/NGS_Id.c.o.d -o CMakeFiles/ngs.dir/NGS_Id.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Id.c -[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX 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"CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" -/usr/bin/ranlib 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"CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" +/usr/bin/ranlib ../../../../ilib/libngs-bind-c++.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 30%] Built target ngs-bind-c++ +make -f tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/build.make tools/external/cache-mgr/CMakeFiles/cache-mgr.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu 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-Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sff-dump.dir/link.d "CMakeFiles/sff-dump.dir/factory.c.o" "CMakeFiles/sff-dump.dir/fasta_dump.c.o" "CMakeFiles/sff-dump.dir/core.c.o" "CMakeFiles/sff-dump.dir/sff.c.o" -o ../../../bin/sff-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sff-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sff-dump sff-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-python.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-dump.3.2.1 sff-dump.3 +[ 31%] Built target rcexplain +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-dump.3 sff-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-vdb.dir/link.txt --verbose=1 +make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info/CMakeFiles/sra-info.dir/DependInfo.cmake "--color=" +[ 31%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o +[ 31%] Built target Test_Drivertool_JsonParsing make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker_0.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker_0.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_walker_0.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache/CMakeFiles/align-cache.dir/DependInfo.cmake "--color=" -[ 40%] Linking CXX executable ../../../bin/align-info -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/align-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-info.dir/link.txt --verbose=1 -[ 40%] Built target rcexplain -[ 40%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -MF CMakeFiles/sra-info.dir/main.cpp.o.d -o CMakeFiles/sra-info.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/main.cpp -[ 40%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -[ 40%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -MF CMakeFiles/sra-pileup.dir/sra-pileup.c.o.d -o CMakeFiles/sra-pileup.dir/sra-pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -MF CMakeFiles/sra-info.dir/sra-info.cpp.o.d -o CMakeFiles/sra-info.dir/sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/sra-info.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 40%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlobIterator.c -[ 40%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o -[ 40%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/align-cache\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o -MF CMakeFiles/align-cache.dir/align-cache.cpp.o.d -o CMakeFiles/align-cache.dir/align-cache.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/align-cache.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/align-cache\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -MF CMakeFiles/align-cache.dir/helper.cpp.o.d -o CMakeFiles/align-cache.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/helper.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c: In function 'perform_report': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:702:16: warning: storing the address of local variable 'data' in '*octx.data' [-Wdangling-pointer=] 702 | octx->data = &data; @@ -3985,618 +3748,877 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/cache-mgr/cache-mgr.c:984:40: note: 'octx' declared here 984 | static rc_t perform_clear( visit_ctx * octx ) | ~~~~~~~~~~~~^~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c: In function 'KMain': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c:1416:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 1416 | ReportBuildDate( __DATE__ ); - | ^~~~~~~~ +[ 31%] Built target sff-dump +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract/CMakeFiles/ccextract.dir/DependInfo.cmake "--color=" -make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact/CMakeFiles/check-redact.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/align-info.dir/link.d "CMakeFiles/align-info.dir/align-info.c.o" -o ../../../bin/align-info /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 40%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -[ 40%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -[ 40%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlob.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f align-info.3.2.1 -make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv align-info align-info.3.2.1 +make -f tools/external/sra-info/CMakeFiles/sra-info.dir/build.make tools/external/sra-info/CMakeFiles/sra-info.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-info.3.2.1 align-info.3 +[ 31%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/accession.cpp.o -MF CMakeFiles/sratools.dir/accession.cpp.o.d -o CMakeFiles/sratools.dir/accession.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.cpp +[ 31%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/ref_walker.c.o -MF CMakeFiles/sra-pileup.dir/ref_walker.c.o.d -o CMakeFiles/sra-pileup.dir/ref_walker.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/ref_walker.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 40%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o make -f tools/internal/ccextract/CMakeFiles/ccextract.dir/build.make tools/internal/ccextract/CMakeFiles/ccextract.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-info.3 align-info -make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -MF CMakeFiles/ngs.dir/VByteBlob.c.o.d -o CMakeFiles/ngs.dir/VByteBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/VByteBlob.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build.make tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat/CMakeFiles/copycat.dir/DependInfo.cmake "--color=" +/usr/bin/ar qc ../../../../ilib/libngs-bind-python.a "CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" +/usr/bin/ranlib ../../../../ilib/libngs-bind-python.a +[ 31%] Linking CXX executable ../../../bin/fastq-dump make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 31%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ar qc ../../ilib/libngs-vdb.a "CMakeFiles/ngs-vdb.dir/VdbReadCollection.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/FragmentBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbReference.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlob.cpp.o" "CMakeFiles/ngs-vdb.dir/ReferenceBlobIterator.cpp.o" "CMakeFiles/ngs-vdb.dir/VdbAlignment.cpp.o" "CMakeFiles/ngs-vdb.dir/NGS-VDB.cpp.o" +/usr/bin/ranlib ../../ilib/libngs-vdb.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/main.cpp.o -MF CMakeFiles/sra-info.dir/main.cpp.o.d -o CMakeFiles/sra-info.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/main.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-dump.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 31%] Building C object tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ccextract\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o -MF CMakeFiles/ccextract.dir/ccextract.c.o.d -o CMakeFiles/ccextract.dir/ccextract.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/ccextract/ccextract.c +make -f tools/internal/align-cache/CMakeFiles/align-cache.dir/build.make tools/internal/align-cache/CMakeFiles/align-cache.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/DependInfo.cmake "--color=" +[ 31%] Built target ngs-bind-python +[ 31%] Built target ngs-vdb +make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact/CMakeFiles/check-redact.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/align-cache.cpp.o -MF CMakeFiles/align-cache.dir/align-cache.cpp.o.d -o CMakeFiles/align-cache.dir/align-cache.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/align-cache.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-decrypt.3.2.1 vdb-decrypt.3 +[ 31%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/check-redact/CMakeFiles/check-redact.dir/build.make tools/internal/check-redact/CMakeFiles/check-redact.dir/build +[ 32%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-aligned.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/walk_debug.c.o -MF CMakeFiles/sra-pileup.dir/walk_debug.c.o.d -o CMakeFiles/sra-pileup.dir/walk_debug.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/walk_debug.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection 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/usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-encrypt.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/internal/md5cp/CMakeFiles/md5cp.dir/build.make tools/internal/md5cp/CMakeFiles/md5cp.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-encrypt vdb-encrypt.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-encrypt.3.2.1 vdb-encrypt.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-encrypt.3 vdb-encrypt +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 32%] Building C object tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o +[ 32%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/repository-mgr.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/check-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o -MF CMakeFiles/check-redact.dir/check-redact.c.o.d -o CMakeFiles/check-redact.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/check-redact/check-redact.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfRetrier.c.o -MF CMakeFiles/prefetch.dir/PrfRetrier.c.o.d -o CMakeFiles/prefetch.dir/PrfRetrier.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfRetrier.c +[ 32%] Built target vdb-decrypt +[ 32%] Built target vdb-encrypt +make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp/CMakeFiles/md5cp.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/DependInfo.cmake "--color=" +[ 33%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -MF CMakeFiles/ngs-disp.dir/PackageItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/PackageItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/PackageItf.cpp +[ 33%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o -MF CMakeFiles/ngs-disp.dir/StringItf.cpp.o.d -o CMakeFiles/ngs-disp.dir/StringItf.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/StringItf.cpp +[ 33%] Linking C static library ../../ilib/libksrch.a +[ 33%] Linking CXX executable ../../../bin/align-info +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cmake -P CMakeFiles/ksrch.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/align-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-info.dir/link.txt --verbose=1 +[ 34%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_counters.c.o -MF CMakeFiles/sra-pileup.dir/pileup_counters.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_counters.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_counters.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 40%] Linking CXX static library ../../../ilib/libngs-disp.a -[ 40%] Built target align-info -[ 40%] Building C object tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -P CMakeFiles/ngs-disp.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ccextract\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/ccextract/CMakeFiles/ccextract.dir/ccextract.c.o -MF CMakeFiles/ccextract.dir/ccextract.c.o.d -o CMakeFiles/ccextract.dir/ccextract.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/ccextract/ccextract.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksrch.dir/link.txt --verbose=1 +[ 34%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o +[ 34%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_index.c.o -MF CMakeFiles/sra-pileup.dir/pileup_index.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_index.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o -MF CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o.d -o CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage/compute-coverage.cpp +[ 34%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/services.c.o +[ 34%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/services.c.o -MF CMakeFiles/srapath.dir/services.c.o.d -o CMakeFiles/srapath.dir/services.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/services.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o -MF CMakeFiles/ngs.dir/SRA_Read.c.o.d -o CMakeFiles/ngs.dir/SRA_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_Read.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastq-dump.dir/link.d "CMakeFiles/fastq-dump.dir/factory.c.o" "CMakeFiles/fastq-dump.dir/fasta_dump.c.o" "CMakeFiles/fastq-dump.dir/core.c.o" "CMakeFiles/fastq-dump.dir/fastq.c.o" -o ../../../bin/fastq-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f fastq-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv fastq-dump fastq-dump.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/ar qc ../../ilib/libksrch.a "CMakeFiles/ksrch.dir/agrep-dp.c.o" "CMakeFiles/ksrch.dir/agrep-myers.c.o" "CMakeFiles/ksrch.dir/agrep-myersunltd.c.o" "CMakeFiles/ksrch.dir/agrep-wumanber.c.o" "CMakeFiles/ksrch.dir/fgrep-aho.c.o" "CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o" "CMakeFiles/ksrch.dir/fgrep-dumb.c.o" CMakeFiles/ksrch.dir/nucstrstr.c.o CMakeFiles/ksrch.dir/search.c.o "CMakeFiles/ksrch.dir/sw-search.c.o" +/usr/bin/ranlib ../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-dump.3.2.1 fastq-dump.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-dump.3 fastq-dump +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 fastq-dump-driver +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 34%] Linking CXX executable ../../../bin/check-corrupt +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-corrupt.dir/link.txt --verbose=1 +[ 34%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o +[ 35%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_indels.c.o -MF CMakeFiles/sra-pileup.dir/pileup_indels.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_indels.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_indels.c +[ 35%] Building C object tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Package.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/test-sra && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/test-sra\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/test-sra/CMakeFiles/test-sra.dir/unix/PrintOS.c.o -MF CMakeFiles/test-sra.dir/unix/PrintOS.c.o.d -o CMakeFiles/test-sra.dir/unix/PrintOS.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/test-sra/unix/PrintOS.c +[ 35%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -MF CMakeFiles/sra-pileup.dir/pileup_varcount.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_varcount.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_varcount.c +[ 35%] Built target fastq-dump +[ 35%] Built target ksrch +make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/depend +[ 35%] Built target ngs-java +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat/CMakeFiles/copycat.dir/DependInfo.cmake "--color=" +[ 35%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/sra-info.cpp.o -MF CMakeFiles/sra-info.dir/sra-info.cpp.o.d -o CMakeFiles/sra-info.dir/sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/sra-info.cpp +[ 35%] Building CXX object tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o +[ 35%] Building C object tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/align-cache\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/align-cache/CMakeFiles/align-cache.dir/helper.cpp.o -MF CMakeFiles/align-cache.dir/helper.cpp.o.d -o CMakeFiles/align-cache.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/align-cache/helper.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/prefetch/CMakeFiles/prefetch.dir/PrfOutFile.c.o -MF CMakeFiles/prefetch.dir/PrfOutFile.c.o.d -o CMakeFiles/prefetch.dir/PrfOutFile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/prefetch/PrfOutFile.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/copycat/CMakeFiles/copycat.dir/build.make tools/internal/copycat/CMakeFiles/copycat.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/align-info.dir/link.d "CMakeFiles/align-info.dir/align-info.c.o" -o ../../../bin/align-info /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f align-info.3.2.1 +[ 35%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv align-info align-info.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o -MF CMakeFiles/copycat.dir/copycat.c.o.d -o CMakeFiles/copycat.dir/copycat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/copycat.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/check-corrupt.dir/link.d "CMakeFiles/check-corrupt.dir/check-corrupt.cpp.o" -o ../../../bin/check-corrupt /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f check-corrupt.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-info.3.2.1 align-info.3 +[ 35%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o +[ 35%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/service.cpp.o +[ 35%] Building CXX object tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-info/CMakeFiles/sra-info.dir/formatter.cpp.o -MF CMakeFiles/sra-info.dir/formatter.cpp.o.d -o CMakeFiles/sra-info.dir/formatter.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info/formatter.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_stat.c.o -MF CMakeFiles/sra-pileup.dir/pileup_stat.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_stat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_stat.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-corrupt.3.2.1 check-corrupt.3 +[ 35%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_Refcount.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-corrupt.3 check-corrupt +[ 35%] Linking CXX executable ../../../bin/cache-mgr +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/cache-mgr && /usr/bin/cmake -E cmake_link_script CMakeFiles/cache-mgr.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 35%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o +[ 36%] Linking CXX executable ../../../bin/ccextract +[ 36%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o +[ 36%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/ccextract && /usr/bin/cmake -E cmake_link_script CMakeFiles/ccextract.dir/link.txt --verbose=1 +[ 36%] Linking CXX static library ../../../ilib/libngs-adapt-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_String.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -P CMakeFiles/ngs-adapt-c++.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/json-parse.cpp.o -MF CMakeFiles/sratools.dir/json-parse.cpp.o.d -o CMakeFiles/sratools.dir/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-unaligned.c.o -MF CMakeFiles/sam-dump.dir/sam-unaligned.c.o.d -o CMakeFiles/sam-dump.dir/sam-unaligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-unaligned.c +[ 36%] Built target align-info +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/adapter && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-adapt-c++.dir/link.txt --verbose=1 +[ 36%] Built target check-corrupt +[ 36%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o +[ 36%] Linking CXX executable ../../../bin/check-redact +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/SDL-response.cpp.o -MF CMakeFiles/sratools.dir/SDL-response.cpp.o.d -o CMakeFiles/sratools.dir/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-redact.dir/link.txt --verbose=1 +[ 36%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o +[ 36%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/tool-args.cpp.o -MF CMakeFiles/sratools.dir/tool-args.cpp.o.d -o CMakeFiles/sratools.dir/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/pileup_v2.c.o -MF CMakeFiles/sra-pileup.dir/pileup_v2.c.o.d -o CMakeFiles/sra-pileup.dir/pileup_v2.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/pileup_v2.c +[ 36%] Building CXX object ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-jni -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -MF CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o.d -o CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/language/java/jni_ErrorMsg.cpp +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3DefaultRowEst': +[ 37%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroup.c +/usr/bin/ar qc ../../../ilib/libngs-adapt-c++.a "CMakeFiles/ngs-adapt-c++.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ReadItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/StringItf.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/Refcount.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrorMsg.cpp.o" "CMakeFiles/ngs-adapt-c++.dir/ErrBlock.cpp.o" +/usr/bin/ranlib ../../../ilib/libngs-adapt-c++.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] +102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); + | ^~ +[ 37%] Built target ngs-adapt-c++ +make -f tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build.make tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/depend +[ 37%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-formats.c +[ 38%] Linking CXX executable ../../../bin/vdb-validate +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-validate.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:11540: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102377:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' +102377 | if( pIdx->pPartIdxWhere!=0 ) a[0] -= 10; assert( 10==sqlite3LogEst(2) ); + | ^~~~~~ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build.make tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/build -make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/depend +[ 38%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -MF CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadGroupInfo.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] +102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); + | ^~ +[ 38%] Building C object tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sra-pileup.dir/sra-pileup.c.o -MF CMakeFiles/sra-pileup.dir/sra-pileup.c.o.d -o CMakeFiles/sra-pileup.dir/sra-pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ccextract.dir/link.d CMakeFiles/ccextract.dir/ccextract.c.o -o ../../../bin/ccextract /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libxml2.so +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f ccextract.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv ccextract ccextract.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/cache-mgr.dir/link.d "CMakeFiles/cache-mgr.dir/cache-mgr.c.o" -o ../../../bin/cache-mgr /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f cache-mgr.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ccextract.3.2.1 ccextract.3 +[ 39%] Building C object tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv cache-mgr cache-mgr.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-unused-result -MD -MT tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o -MF CMakeFiles/make-read-filter.dir/make-read-filter.c.o.d -o CMakeFiles/make-read-filter.dir/make-read-filter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/make-read-filter/make-read-filter.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ccextract.3 ccextract +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cache-mgr.3.2.1 cache-mgr.3 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:102378:45: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' +102378 | if( a[0]<33 ) a[0] = 33; assert( 33==sqlite3LogEst(10) ); + | ^~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cache-mgr.3 cache-mgr +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/check-redact.dir/link.d "CMakeFiles/check-redact.dir/check-redact.c.o" -o ../../../bin/check-redact /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f check-redact.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/md_flag.c.o -MF CMakeFiles/sam-dump.dir/md_flag.c.o.d -o CMakeFiles/sam-dump.dir/md_flag.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/md_flag.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 39%] Built target ccextract +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv check-redact check-redact.3.2.1 +make -f tools/internal/md5cp/CMakeFiles/md5cp.dir/build.make tools/internal/md5cp/CMakeFiles/md5cp.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-redact.3.2.1 check-redact.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-redact.3 check-redact +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c: In function 'KMain': make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp/CMakeFiles/md5cp.dir/DependInfo.cmake "--color=" +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sra-pileup.c:1416:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 1416 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o +[ 39%] Built target cache-mgr +[ 39%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/cg_tools.c.o -MF CMakeFiles/sam-dump.dir/cg_tools.c.o.d -o CMakeFiles/sam-dump.dir/cg_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/cg_tools.c +make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o -MF CMakeFiles/ngs-disp.dir/Refcount.cpp.o.d -o CMakeFiles/ngs-disp.dir/Refcount.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/Refcount.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/DependInfo.cmake "--color=" -[ 40%] Building C object tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/check-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/check-redact/CMakeFiles/check-redact.dir/check-redact.c.o -MF CMakeFiles/check-redact.dir/check-redact.c.o.d -o CMakeFiles/check-redact.dir/check-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/check-redact/check-redact.c -[ 40%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o +[ 39%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/cgi_request.c.o -MF CMakeFiles/srapath.dir/cgi_request.c.o.d -o CMakeFiles/srapath.dir/cgi_request.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/cgi_request.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/compute-coverage/CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o -MF CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o.d -o CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage/compute-coverage.cpp make -f tools/internal/md5cp/CMakeFiles/md5cp.dir/build.make tools/internal/md5cp/CMakeFiles/md5cp.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 40%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o -[ 41%] Building C object tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/copycat.c.o -MF CMakeFiles/copycat.dir/copycat.c.o.d -o CMakeFiles/copycat.dir/copycat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/copycat.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-unused-result -MD -MT tools/internal/make-read-filter/CMakeFiles/make-read-filter.dir/make-read-filter.c.o -MF CMakeFiles/make-read-filter.dir/make-read-filter.c.o.d -o CMakeFiles/make-read-filter.dir/make-read-filter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/make-read-filter/make-read-filter.c +[ 39%] Built target check-redact make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-disp.dir/link.txt --verbose=1 make -f tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build.make tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/build +[ 39%] Building C object tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o -MF CMakeFiles/md5cp.dir/md5cp.c.o.d -o CMakeFiles/md5cp.dir/md5cp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/md5cp/md5cp.c +[ 39%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o -MF CMakeFiles/copycat.dir/ccfileformat.c.o.d -o CMakeFiles/copycat.dir/ccfileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c +[ 39%] Building C object tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.cpp:36: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/meta-cmp\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o -MF CMakeFiles/meta-cmp.dir/meta-cmp.c.o.d -o CMakeFiles/meta-cmp.dir/meta-cmp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-cmp/meta-cmp.c +[ 39%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-validate.dir/link.d "CMakeFiles/vdb-validate.dir/main.c.o" "CMakeFiles/vdb-validate.dir/vdb-validate.c.o" "CMakeFiles/vdb-validate.dir/check-redact.c.o" -o ../../../bin/vdb-validate /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-validate.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o -MF CMakeFiles/copycat.dir/cccat.c.o.d -o CMakeFiles/copycat.dir/cccat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cccat.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-validate vdb-validate.3.2.1 +[ 39%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-validate.3.2.1 vdb-validate.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-redir.c +[ 39%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-validate.3 vdb-validate +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -MF CMakeFiles/ngs.dir/SRA_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReadCollection.c +[ 39%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-fastq.c +[ 39%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o +[ 39%] Built target vdb-validate make -f tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build.make tools/internal/meta-copy/CMakeFiles/meta-copy.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/SRA_ReferenceSequence.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy/CMakeFiles/meta-copy.dir/DependInfo.cmake "--color=" -[ 41%] Building C object tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/md5cp/CMakeFiles/md5cp.dir/md5cp.c.o -MF CMakeFiles/md5cp.dir/md5cp.c.o.d -o CMakeFiles/md5cp.dir/md5cp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/md5cp/md5cp.c -[ 41%] Building C object tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/meta-cmp\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-cmp/CMakeFiles/meta-cmp.dir/meta-cmp.c.o -MF CMakeFiles/meta-cmp.dir/meta-cmp.c.o.d -o CMakeFiles/meta-cmp.dir/meta-cmp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-cmp/meta-cmp.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build.make tools/internal/meta-copy/CMakeFiles/meta-copy.dir/build +[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump.c.o -MF CMakeFiles/sam-dump.dir/sam-dump.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 41%] Building C object tools/internal/meta-copy/CMakeFiles/meta-copy.dir/meta-copy.c.o +[ 39%] Building C object tools/internal/meta-copy/CMakeFiles/meta-copy.dir/meta-copy.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/meta-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-copy/CMakeFiles/meta-copy.dir/meta-copy.c.o -MF CMakeFiles/meta-copy.dir/meta-copy.c.o.d -o CMakeFiles/meta-copy.dir/meta-copy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-copy/meta-copy.c -[ 41%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfileformat.c.o -MF CMakeFiles/copycat.dir/ccfileformat.c.o.d -o CMakeFiles/copycat.dir/ccfileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair/CMakeFiles/meta-repair.dir/DependInfo.cmake "--color=" -[ 41%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o -[ 41%] Linking CXX static library ../../../../ilib/libngs-bind-java.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o -MF CMakeFiles/copycat.dir/cctree-dump.c.o.d -o CMakeFiles/copycat.dir/cctree-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c +[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/sam-dump3.c.o -MF CMakeFiles/sam-dump.dir/sam-dump3.c.o.d -o CMakeFiles/sam-dump.dir/sam-dump3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c: In function 'CCFileFormatIsFastq': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c:277:27: warning: 'seq_len' may be used uninitialized [-Wmaybe-uninitialized] + 277 | if(quality_values_len != seq_len) + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c:195:12: note: 'seq_len' was declared here + 195 | size_t seq_len,quality_values_len,seq_id_len; + | ^~~~~~~ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build +[ 39%] Building C object tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-pileup/CMakeFiles/sam-dump.dir/dyn_string.c.o -MF CMakeFiles/sam-dump.dir/dyn_string.c.o.d -o CMakeFiles/sam-dump.dir/dyn_string.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/dyn_string.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 39%] Linking CXX executable ../../../bin/meta-cmp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-cmp.dir/link.txt --verbose=1 +[ 39%] Linking CXX static library ../../../../ilib/libngs-bind-java.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -P CMakeFiles/ngs-bind-java.dir/cmake_clean_target.cmake -[ 41%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o -[ 41%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o +[ 39%] Building C object tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/meta-repair\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o -MF CMakeFiles/meta-repair.dir/meta-repair.c.o.d -o CMakeFiles/meta-repair.dir/meta-repair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-repair/meta-repair.c +[ 39%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o -MF CMakeFiles/ngs-disp.dir/VTable.cpp.o.d -o CMakeFiles/ngs-disp.dir/VTable.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/VTable.cpp +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c: In function 'KMain': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump3.c:557:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 557 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c: In function 'SAM_Dump_Main': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-pileup/sam-dump.c:4387:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 4387 | ReportBuildDate( __DATE__ ); + | ^~~~~~~~ +[ 40%] Linking CXX executable ../../../bin/prefetch +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/prefetch.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-java.dir/link.txt --verbose=1 +[ 40%] Linking CXX executable ../../../bin/md5cp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/md5cp && /usr/bin/cmake -E cmake_link_script CMakeFiles/md5cp.dir/link.txt --verbose=1 +[ 40%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o -MF CMakeFiles/ngs.dir/NGS_Statistics.c.o.d -o CMakeFiles/ngs.dir/NGS_Statistics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Statistics.c +/usr/bin/ar qc ../../../../ilib/libngs-bind-java.a "CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" +/usr/bin/ranlib ../../../../ilib/libngs-bind-java.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 40%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o +[ 40%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree.c.o -MF CMakeFiles/copycat.dir/cctree.c.o.d -o CMakeFiles/copycat.dir/cctree.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cccat.c.o -MF CMakeFiles/copycat.dir/cccat.c.o.d -o CMakeFiles/copycat.dir/cccat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cccat.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -MF CMakeFiles/ngs.dir/NGS_ReadCollection.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadCollection.c +[ 40%] Built target ngs-bind-java make -f tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/depend +[ 41%] Linking CXX executable ../../../bin/meta-copy make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build.make tools/internal/meta-repair/CMakeFiles/meta-repair.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/language/java && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-bind-java.dir/link.txt --verbose=1 -[ 41%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o -[ 42%] Linking C static library ../../../../ilib/libtui.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o -MF CMakeFiles/copycat.dir/cctar.c.o.d -o CMakeFiles/copycat.dir/cctar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctar.c -[ 42%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -P CMakeFiles/tui.dir/cmake_clean_target.cmake -cd 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-c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsra.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-copy.dir/link.txt --verbose=1 +[ 41%] Building C object tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/srapath\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/srapath/CMakeFiles/srapath.dir/srapath.c.o -MF CMakeFiles/srapath.dir/srapath.c.o.d -o CMakeFiles/srapath.dir/srapath.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/srapath/srapath.c +[ 41%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrBlock.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 42%] Linking CXX executable ../../../bin/srapath -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cmake -E cmake_link_script CMakeFiles/srapath.dir/link.txt --verbose=1 -[ 42%] Building C object tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o -/usr/bin/ar qc ../../../ilib/libngs-disp.a "CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "CMakeFiles/ngs-disp.dir/VTable.cpp.o" "CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" -/usr/bin/ranlib ../../../ilib/libngs-disp.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/meta-repair\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/meta-repair/CMakeFiles/meta-repair.dir/meta-repair.c.o -MF CMakeFiles/meta-repair.dir/meta-repair.c.o.d -o CMakeFiles/meta-repair.dir/meta-repair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/meta-repair/meta-repair.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 42%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/tui && /usr/bin/cmake -E cmake_link_script CMakeFiles/tui.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -MF CMakeFiles/copycat.dir/ccsubchunk.c.o.d -o CMakeFiles/copycat.dir/ccsubchunk.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsubchunk.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c:39:9: warning: "__USE_POSIX" redefined - 39 | #define __USE_POSIX - | ^~~~~~~~~~~ -In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, - from /usr/include/stdint.h:26, - from /usr/lib/gcc/x86_64-linux-gnu/14/include/stdint.h:9, - from /usr/include/ncbi-vdb/kfc/defs.h:34, - from /usr/include/ncbi-vdb/klib/defs.h:31, - from /usr/include/ncbi-vdb/klib/container.h:35, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-priv.h:31, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c:27: -/usr/include/features.h:348:10: note: this is the location of the previous definition - 348 | # define __USE_POSIX 1 - | ^~~~~~~~~~~ -[ 42%] Building C object tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o +[ 41%] Building CXX object ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ngs-sdk/dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -MF CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o.d -o CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/dispatch/ErrorMsg.cpp +[ 41%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -MF CMakeFiles/ngs.dir/NGS_PileupEvent.c.o.d -o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_PileupEvent.c +[ 41%] Building C object tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/rd-filter-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -MF CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o.d -o CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/test-read-write-cursor.c -[ 42%] Built target ngs-disp -make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/DependInfo.cmake "--color=" -[ 42%] Linking C static library ../../../ilib/libngs.a -/usr/bin/ar qc ../../../../ilib/libtui.a CMakeFiles/tui.dir/dir_dlg.c.o CMakeFiles/tui.dir/eventring.c.o CMakeFiles/tui.dir/file_dlg.c.o CMakeFiles/tui.dir/line_policy.c.o CMakeFiles/tui.dir/screen.c.o CMakeFiles/tui.dir/string_cache.c.o CMakeFiles/tui.dir/tui.c.o CMakeFiles/tui.dir/tui_dlg.c.o CMakeFiles/tui.dir/tui_dlg_helper.c.o CMakeFiles/tui.dir/tui_menu.c.o CMakeFiles/tui.dir/tui_palette.c.o CMakeFiles/tui.dir/tui_std_dlg.c.o CMakeFiles/tui.dir/tui_widget.c.o CMakeFiles/tui.dir/tui_widget_button.c.o CMakeFiles/tui.dir/tui_widget_checkbox.c.o CMakeFiles/tui.dir/tui_widget_grid.c.o CMakeFiles/tui.dir/tui_widget_inputline.c.o CMakeFiles/tui.dir/tui_widget_label.c.o CMakeFiles/tui.dir/tui_widget_progress.c.o CMakeFiles/tui.dir/tui_widget_radiobox.c.o CMakeFiles/tui.dir/tui_widget_spin_edit.c.o CMakeFiles/tui.dir/tui_widget_string_list.c.o CMakeFiles/tui.dir/tui_widget_tabhdr.c.o CMakeFiles/tui.dir/linux/systui.c.o -/usr/bin/ranlib ../../../../ilib/libtui.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -P CMakeFiles/ngs.dir/cmake_clean_target.cmake +[ 42%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/build-version.cpp.o -MF CMakeFiles/sratools.dir/build-version.cpp.o.d -o CMakeFiles/sratools.dir/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-cmp.dir/link.d "CMakeFiles/meta-cmp.dir/meta-cmp.c.o" -o ../../../bin/meta-cmp /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-cmp.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv meta-cmp meta-cmp.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/prefetch.dir/link.d "CMakeFiles/prefetch.dir/kfile-no-q.c.o" CMakeFiles/prefetch.dir/PrfMain.c.o CMakeFiles/prefetch.dir/prefetch.c.o CMakeFiles/prefetch.dir/PrfRetrier.c.o CMakeFiles/prefetch.dir/PrfOutFile.c.o -o ../../../bin/prefetch ../../../ilib/libascp.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-cmp.3.2.1 meta-cmp.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f prefetch.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-cmp.3 meta-cmp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv prefetch prefetch.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/md5cp.dir/link.d CMakeFiles/md5cp.dir/md5cp.c.o -o ../../../bin/md5cp /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f md5cp.3.2.1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv md5cp md5cp.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s prefetch.3.2.1 prefetch.3 +[ 42%] Linking CXX executable ../../../bin/compute-coverage +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s md5cp.3.2.1 md5cp.3 +[ 42%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o -MF CMakeFiles/ngs.dir/NGS_Pileup.c.o.d -o CMakeFiles/ngs.dir/NGS_Pileup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Pileup.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s md5cp.3 md5cp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s prefetch.3 prefetch make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 42%] Built target meta-cmp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 prefetch-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build +[ 42%] Linking CXX executable ../../../bin/sra-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-pileup.dir/link.txt --verbose=1 +make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/ar qc ../../../../ilib/libngs-bind-java.a "CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" -/usr/bin/ranlib ../../../../ilib/libngs-bind-java.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs.dir/link.txt --verbose=1 -[ 42%] Building C object tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/rd-filter-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -MF CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o.d -o CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c -[ 42%] Built target tui -[ 42%] Built target ngs-bind-java -[ 42%] Linking CXX executable ../../../bin/check-redact -[ 43%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/check-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/check-redact.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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Linking CXX executable ../../../bin/cache-mgr make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/cache-mgr && /usr/bin/cmake -E cmake_link_script CMakeFiles/cache-mgr.dir/link.txt --verbose=1 -[ 43%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o -cd 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CMakeFiles/copycat.dir/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/fileformat.c -[ 43%] Linking CXX executable ../../../bin/md5cp -[ 43%] Linking CXX executable ../../../bin/meta-cmp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c: In function 'CCFileFormatIsFastq': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c:277:27: warning: 'seq_len' may be used uninitialized [-Wmaybe-uninitialized] - 277 | if(quality_values_len != seq_len) - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfileformat.c:195:12: note: 'seq_len' was declared here - 195 | size_t seq_len,quality_values_len,seq_id_len; - | ^~~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-cmp && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-cmp.dir/link.txt --verbose=1 -cd 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -MF CMakeFiles/copycat.dir/kff/ffext.c.o.d -o CMakeFiles/copycat.dir/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 45%] Linking CXX executable ../../../bin/meta-copy -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-copy.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build.make tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build.make tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c: In function 'enter_date_name_vers': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c:755:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 755 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); - | ^~~~~~~~ -[ 45%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/context.c.o +make -f tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build.make tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-copy.dir/link.d "CMakeFiles/meta-copy.dir/meta-copy.c.o" -o ../../../bin/meta-copy /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 42%] Building C object tools/internal/rd-filter-redact/CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-copy.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/rd-filter-redact\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. 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meta-copy.3 meta-copy make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/crc32sum /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/srapath.dir/link.d CMakeFiles/srapath.dir/helper.c.o CMakeFiles/srapath.dir/line_iter.c.o "CMakeFiles/srapath.dir/repository-mgr.c.o" CMakeFiles/srapath.dir/services.c.o CMakeFiles/srapath.dir/cgi_request.c.o CMakeFiles/srapath.dir/srapath.c.o -o ../../../bin/srapath /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f srapath.3.2.1 -[ 45%] Built target ngs +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 42%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -MF CMakeFiles/ngs.dir/NGS_ReadGroup.c.o.d -o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReadGroup.c +[ 42%] Built target meta-copy make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/depend -[ 45%] Linking CXX executable ../../../bin/test-read-write-cursor -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv srapath srapath.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-read-write-cursor.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srapath.3.2.1 srapath.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/test-download /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download 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srapath +[ 42%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o +[ 42%] Linking CXX executable ../../../bin/make-read-filter +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/make-read-filter.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s compute-coverage.3 compute-coverage +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o -MF CMakeFiles/vdb-copy.dir/helper.c.o.d -o CMakeFiles/vdb-copy.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/helper.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/test-tools/test-download/CMakeFiles/test-download.dir/build.make tools/test-tools/test-download/CMakeFiles/test-download.dir/build +[ 42%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/cctree-dump.c.o -MF CMakeFiles/copycat.dir/cctree-dump.c.o.d -o CMakeFiles/copycat.dir/cctree-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c +[ 42%] Linking CXX executable ../../../bin/test-read-write-cursor +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 43%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-read-write-cursor.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o -MF CMakeFiles/ngs.dir/NGS_Alignment.c.o.d -o CMakeFiles/ngs.dir/NGS_Alignment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Alignment.c +[ 43%] Building C object tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o -MF CMakeFiles/crc32sum.dir/crc32sum.c.o.d -o CMakeFiles/crc32sum.dir/crc32sum.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/crc32sum/crc32sum.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c: In function 'enter_date_name_vers': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/rd-filter-redact/read-filter-redact.c:755:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 755 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); + | ^~~~~~~~ +[ 43%] Building C object tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/test-download/CMakeFiles/test-download.dir/test-download.c.o -MF CMakeFiles/test-download.dir/test-download.c.o.d -o CMakeFiles/test-download.dir/test-download.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/test-download/test-download.c +[ 43%] Built target compute-coverage make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/kdb-index /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/check-redact.dir/link.d "CMakeFiles/check-redact.dir/check-redact.c.o" -o ../../../bin/check-redact /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f check-redact.3.2.1 -[ 46%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o -[ 46%] Building C object tools/test-tools/crc32sum/CMakeFiles/crc32sum.dir/crc32sum.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv check-redact check-redact.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o -MF CMakeFiles/ngs.dir/NGS_Reference.c.o.d -o CMakeFiles/ngs.dir/NGS_Reference.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Reference.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c:39:9: warning: "__USE_POSIX" redefined + 39 | #define __USE_POSIX + | ^~~~~~~~~~~ +In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, + from /usr/include/stdint.h:26, + from /usr/lib/gcc/x86_64-linux-gnu/14/include/stdint.h:9, + from /usr/include/ncbi-vdb/kfc/defs.h:34, + from /usr/include/ncbi-vdb/klib/defs.h:31, + from /usr/include/ncbi-vdb/klib/container.h:35, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-priv.h:31, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/cctree-dump.c:27: +/usr/include/features.h:348:10: note: this is the location of the previous definition + 348 | # define __USE_POSIX 1 + | ^~~~~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 43%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o make -f tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build.make tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/helper.c.o -MF CMakeFiles/vdb-copy.dir/helper.c.o.d -o CMakeFiles/vdb-copy.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/helper.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceSequence.c +[ 43%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-redact.3.2.1 check-redact.3 -[ 46%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s check-redact.3 check-redact -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/cache-mgr.dir/link.d "CMakeFiles/cache-mgr.dir/cache-mgr.c.o" -o ../../../bin/cache-mgr /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f md5cp.3.2.1 -[ 46%] Linking CXX executable ../../../bin/sra-pileup -[ 46%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -MF CMakeFiles/vdb-copy.dir/get_platform.c.o.d -o CMakeFiles/vdb-copy.dir/get_platform.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/get_platform.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv md5cp md5cp.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c +[ 43%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/cctar.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc 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tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o +[ 43%] Building C object tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/kdb-index/CMakeFiles/kdb-index.dir/kdb-index.c.o -MF CMakeFiles/kdb-index.dir/kdb-index.c.o.d -o CMakeFiles/kdb-index.dir/kdb-index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/kdb-index/kdb-index.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s md5cp.3 md5cp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cache-mgr.3 cache-mgr -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-cmp.dir/link.d "CMakeFiles/meta-cmp.dir/meta-cmp.c.o" -o ../../../bin/meta-cmp /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-cmp.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv meta-cmp meta-cmp.3.2.1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o -MF CMakeFiles/vdb-copy.dir/copy_meta.c.o.d -o CMakeFiles/vdb-copy.dir/copy_meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-copy.dir/link.d "CMakeFiles/meta-copy.dir/meta-copy.c.o" -o ../../../bin/meta-copy /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 47%] Built target md5cp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-copy.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-cmp.3.2.1 meta-cmp.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-cmp.3 meta-cmp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv meta-copy meta-copy.3.2.1 -[ 47%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/vdb-diff-context.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-copy.3.2.1 meta-copy.3 -[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -MF CMakeFiles/vdb-copy.dir/type_matcher.c.o.d -o CMakeFiles/vdb-copy.dir/type_matcher.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/type_matcher.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-copy.3 meta-copy -[ 47%] Built target cache-mgr -[ 47%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -MF CMakeFiles/vdb-diff.dir/cmn.c.o.d -o CMakeFiles/vdb-diff.dir/cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/cmn.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsra.c.o -MF CMakeFiles/copycat.dir/ccsra.c.o.d -o CMakeFiles/copycat.dir/ccsra.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsra.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-pileup.dir/link.d "CMakeFiles/sra-pileup.dir/dyn_string.c.o" "CMakeFiles/sra-pileup.dir/cmdline_cmn.c.o" "CMakeFiles/sra-pileup.dir/out_redir.c.o" "CMakeFiles/sra-pileup.dir/perf_log.c.o" "CMakeFiles/sra-pileup.dir/reref.c.o" "CMakeFiles/sra-pileup.dir/cg_tools.c.o" "CMakeFiles/sra-pileup.dir/report_deletes.c.o" "CMakeFiles/sra-pileup.dir/ref_regions.c.o" "CMakeFiles/sra-pileup.dir/4na_ascii.c.o" "CMakeFiles/sra-pileup.dir/ref_walker_0.c.o" "CMakeFiles/sra-pileup.dir/ref_walker.c.o" "CMakeFiles/sra-pileup.dir/walk_debug.c.o" "CMakeFiles/sra-pileup.dir/pileup_counters.c.o" "CMakeFiles/sra-pileup.dir/pileup_index.c.o" "CMakeFiles/sra-pileup.dir/pileup_indels.c.o" "CMakeFiles/sra-pileup.dir/pileup_varcount.c.o" "CMakeFiles/sra-pileup.dir/pileup_stat.c.o" "CMakeFiles/sra-pileup.dir/pileup_v2.c.o" "CMakeFiles/sra-pileup.dir/sra-pileup.c.o" -o ../../../bin/sra-pileup /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-pileup.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-pileup sra-pileup.3.2.1 +[ 43%] Linking CXX executable ../../../bin/align-cache +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-cache.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-pileup.3.2.1 sra-pileup.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-pileup.3 sra-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 sra-pileup-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ccextract.dir/link.d CMakeFiles/ccextract.dir/ccextract.c.o -o ../../../bin/ccextract /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libxml2.so -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f ccextract.3.2.1 -[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -MF CMakeFiles/vdb-copy.dir/redactval.c.o.d -o CMakeFiles/vdb-copy.dir/redactval.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/redactval.c -[ 47%] Built target meta-cmp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv ccextract ccextract.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ccextract.3.2.1 ccextract.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ccextract.3 ccextract -[ 47%] Built target meta-copy -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c: In function 'enter_date_name_vers': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c:301:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 301 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); - | ^~~~~~~~ -[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/make-read-filter.dir/link.d "CMakeFiles/make-read-filter.dir/make-read-filter.c.o" -o ../../../bin/make-read-filter /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f make-read-filter.3.2.1 +[ 43%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/coldefs.c.o -MF CMakeFiles/vdb-copy.dir/coldefs.c.o.d -o CMakeFiles/vdb-copy.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/coldefs.c +[ 43%] Built target sra-pileup make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv make-read-filter make-read-filter.3.2.1 +[ 43%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -MF CMakeFiles/vdb-copy.dir/config_values.c.o.d -o CMakeFiles/vdb-copy.dir/config_values.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/config_values.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pacbio-correct /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-read-write-cursor.dir/link.d "CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o" -o ../../../bin/test-read-write-cursor /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-inspect.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-read-write-cursor.3.2.1 +[ 44%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/coldefs.c.o -MF CMakeFiles/vdb-diff.dir/coldefs.c.o.d -o CMakeFiles/vdb-diff.dir/coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/coldefs.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv test-read-write-cursor test-read-write-cursor.3.2.1 +[ 44%] Linking CXX executable ../../../bin/srapath +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/srapath && /usr/bin/cmake -E cmake_link_script CMakeFiles/srapath.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-read-write-cursor.3.2.1 test-read-write-cursor.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s make-read-filter.3.2.1 make-read-filter.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-read-write-cursor.3 test-read-write-cursor +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s make-read-filter.3 make-read-filter +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 44%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb_info.c.o -MF CMakeFiles/vdb-dump.dir/vdb_info.c.o.d -o CMakeFiles/vdb-dump.dir/vdb_info.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb_info.c +[ 44%] Built target test-read-write-cursor make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/depend +[ 44%] Built target make-read-filter +make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/DependInfo.cmake "--color=" -[ 47%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -MF CMakeFiles/copycat.dir/kff/ffmagic.c.o.d -o CMakeFiles/copycat.dir/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c -make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/DependInfo.cmake "--color=" -[ 47%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o -[ 47%] Built target ccextract -make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o -MF CMakeFiles/vdb-diff.dir/row_by_row.c.o.d -o CMakeFiles/vdb-diff.dir/row_by_row.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/row_by_row.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build.make tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/build -[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o +[ 44%] Building C object tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -MF CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o.d -o CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pacbio-correct/pacbio-correct.c +[ 44%] Linking CXX executable ../../../bin/meta-repair +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-repair.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build.make tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-read-write-cursor.dir/link.d "CMakeFiles/test-read-write-cursor.dir/test-read-write-cursor.c.o" -o ../../../bin/test-read-write-cursor /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-read-write-cursor.3.2.1 make -f tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build.make tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o -MF CMakeFiles/vdb-copy.dir/vdb-copy.c.o.d -o CMakeFiles/vdb-copy.dir/vdb-copy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv test-read-write-cursor test-read-write-cursor.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-read-write-cursor.3.2.1 test-read-write-cursor.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-read-write-cursor.3 test-read-write-cursor -[ 47%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o -[ 47%] Building C object tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o +[ 44%] Building C object tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/schema-replace/CMakeFiles/schema-replace.dir/schema-replace.c.o -MF CMakeFiles/schema-replace.dir/schema-replace.c.o.d -o CMakeFiles/schema-replace.dir/schema-replace.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/schema-replace/schema-replace.c +[ 44%] Building C object tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o -MF CMakeFiles/sortreadtest.dir/sortreadtest.c.o.d -o CMakeFiles/sortreadtest.dir/sortreadtest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest/sortreadtest.c +[ 44%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/vdb-diff-context.c +[ 44%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/file-path.posix.cpp.o -MF CMakeFiles/sratools.dir/file-path.posix.cpp.o.d -o CMakeFiles/sratools.dir/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/align-cache.dir/link.d "CMakeFiles/align-cache.dir/align-cache.cpp.o" "CMakeFiles/align-cache.dir/helper.cpp.o" -o ../../../bin/align-cache /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f align-cache.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv align-cache align-cache.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-cache.3.2.1 align-cache.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-cache.3 align-cache +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/srapath.dir/link.d CMakeFiles/srapath.dir/helper.c.o CMakeFiles/srapath.dir/line_iter.c.o "CMakeFiles/srapath.dir/repository-mgr.c.o" CMakeFiles/srapath.dir/services.c.o CMakeFiles/srapath.dir/cgi_request.c.o CMakeFiles/srapath.dir/srapath.c.o -o ../../../bin/srapath /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f srapath.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv srapath srapath.3.2.1 +[ 44%] Built target align-cache +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srapath.3.2.1 srapath.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srapath.3 srapath +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 srapath-driver +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 44%] Building C object tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o +[ 44%] Building CXX object tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o +[ 44%] Linking CXX executable ../../../bin/kdb-index +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-dump/CMakeFiles/vdb-dump.dir/vdb-dump.c.o -MF CMakeFiles/vdb-dump.dir/vdb-dump.c.o.d -o CMakeFiles/vdb-dump.dir/vdb-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/c++ -DBUILD_PATH=\"/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin\" -DLINUX -DNDEBUG -DPREFIX_PATH=\"\" -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/driver-tool\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/driver-tool/CMakeFiles/sratools.dir/proc.posix.cpp.o -MF CMakeFiles/sratools.dir/proc.posix.cpp.o.d -o CMakeFiles/sratools.dir/proc.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/proc.posix.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/kdb-index && /usr/bin/cmake -E cmake_link_script CMakeFiles/kdb-index.dir/link.txt --verbose=1 +[ 44%] Linking CXX static library ../../../ilib/libngs-disp.a +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-repair.dir/link.d "CMakeFiles/meta-repair.dir/meta-repair.c.o" -o ../../../bin/meta-repair /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 44%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-repair.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -P CMakeFiles/ngs-disp.dir/cmake_clean_target.cmake +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv meta-repair meta-repair.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/cmn.c.o -MF CMakeFiles/vdb-diff.dir/cmn.c.o.d -o CMakeFiles/vdb-diff.dir/cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/cmn.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-repair.3.2.1 meta-repair.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-repair.3 meta-repair +[ 44%] Built target srapath +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/depend +[ 44%] Linking CXX executable ../../../bin/crc32sum +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/DependInfo.cmake "--color=" +[ 44%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/crc32sum && /usr/bin/cmake -E cmake_link_script CMakeFiles/crc32sum.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o -MF CMakeFiles/ngs.dir/NGS_Read.c.o.d -o CMakeFiles/ngs.dir/NGS_Read.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Read.c +[ 44%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o +[ 44%] Linking CXX executable ../../../bin/pacbio-correct +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/dispatch && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-disp.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccsubchunk.c.o -MF CMakeFiles/copycat.dir/ccsubchunk.c.o.d -o CMakeFiles/copycat.dir/ccsubchunk.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccsubchunk.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-correct.dir/link.txt --verbose=1 +[ 44%] Linking CXX executable ../../../bin/read-filter-redact +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/read-filter-redact.dir/link.txt --verbose=1 +[ 44%] Built target meta-repair +[ 44%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o +[ 45%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o +[ 45%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o -MF CMakeFiles/vdb-diff.dir/col_by_col.c.o.d -o CMakeFiles/vdb-diff.dir/col_by_col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/col_by_col.c make -f tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build.make tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/build +[ 45%] Linking CXX executable ../../../bin/test-download +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/ccfile.c.o -MF CMakeFiles/copycat.dir/ccfile.c.o.d -o CMakeFiles/copycat.dir/ccfile.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/ccfile.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-download.dir/link.txt --verbose=1 make[3]: Entering directory 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tools/test-tools/sortreadtest/CMakeFiles/sortreadtest.dir/sortreadtest.c.o -MF CMakeFiles/sortreadtest.dir/sortreadtest.c.o.d -o CMakeFiles/sortreadtest.dir/sortreadtest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sortreadtest/sortreadtest.c -[ 47%] Building C object tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -[ 47%] Linking CXX executable ../../../bin/make-read-filter -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/pacbio-correct/CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -MF CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o.d -o CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pacbio-correct/pacbio-correct.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/make-read-filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/make-read-filter.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/fileformat.c.o -MF CMakeFiles/copycat.dir/kff/fileformat.c.o.d -o CMakeFiles/copycat.dir/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/fileformat.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/get_platform.c.o -MF CMakeFiles/vdb-copy.dir/get_platform.c.o.d -o CMakeFiles/vdb-copy.dir/get_platform.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/get_platform.c +[ 45%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/row_by_row.c.o +cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/row_by_row.c +[ 46%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/copy_meta.c.o +[ 46%] Building C object tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -MF CMakeFiles/rowwritetest.dir/rowwritetest.c.o.d -o CMakeFiles/rowwritetest.dir/rowwritetest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest/rowwritetest.c +[ 46%] Linking CXX executable ../../../bin/test-sra +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/test-sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra.dir/link.txt --verbose=1 +[ 47%] Linking CXX executable ../../../bin/sortreadtest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/sortreadtest.dir/link.txt --verbose=1 +[ 47%] Linking CXX executable ../../../bin/schema-replace +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cmake -E cmake_link_script CMakeFiles/schema-replace.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../../ilib/libngs-disp.a "CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "CMakeFiles/ngs-disp.dir/VTable.cpp.o" "CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" +/usr/bin/ranlib ../../../ilib/libngs-disp.a +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c: In function 'enter_date_name_vers': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/copy_meta.c:301:59: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 301 | rc = KMDataNodeWriteAttr ( node, "build", __DATE__ ); + | ^~~~~~~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kdb-index.dir/link.d "CMakeFiles/kdb-index.dir/kdb-index.c.o" -o ../../../bin/kdb-index /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kdb-index.3.2.1 +[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/type_matcher.c.o -MF CMakeFiles/vdb-copy.dir/type_matcher.c.o.d -o CMakeFiles/vdb-copy.dir/type_matcher.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/type_matcher.c +[ 47%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kdb-index kdb-index.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o -MF CMakeFiles/ngs.dir/NGS_Fragment.c.o.d -o CMakeFiles/ngs.dir/NGS_Fragment.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Fragment.c +[ 47%] Built target ngs-disp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdb-index.3.2.1 kdb-index.3 make -f tools/test-tools/samview-util/CMakeFiles/samview-util.dir/build.make tools/test-tools/samview-util/CMakeFiles/samview-util.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdb-index.3 kdb-index +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/samview-util /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util/CMakeFiles/samview-util.dir/DependInfo.cmake "--color=" -[ 47%] Linking CXX executable ../../../bin/crc32sum -[ 47%] Building C object tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/rowwritetest/CMakeFiles/rowwritetest.dir/rowwritetest.c.o -MF CMakeFiles/rowwritetest.dir/rowwritetest.c.o.d -o CMakeFiles/rowwritetest.dir/rowwritetest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rowwritetest/rowwritetest.c -make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/depend -[ 47%] Linking CXX executable ../../../bin/kdb-index -cd 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CMakeFiles/copycat.dir/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffkey.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s read-filter-redact.3.2.1 read-filter-redact.3 +[ 47%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o +[ 47%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o -MF CMakeFiles/ngs.dir/NGS_Cursor.c.o.d -o CMakeFiles/ngs.dir/NGS_Cursor.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Cursor.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffext.c.o -MF CMakeFiles/copycat.dir/kff/ffext.c.o.d -o CMakeFiles/copycat.dir/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c +[ 47%] Building C object tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s read-filter-redact.3 read-filter-redact +[ 47%] Built target kdb-index make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/build 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"CMakeFiles/sra-pileup.dir/pileup_index.c.o" "CMakeFiles/sra-pileup.dir/pileup_indels.c.o" "CMakeFiles/sra-pileup.dir/pileup_varcount.c.o" "CMakeFiles/sra-pileup.dir/pileup_stat.c.o" "CMakeFiles/sra-pileup.dir/pileup_v2.c.o" "CMakeFiles/sra-pileup.dir/sra-pileup.c.o" -o ../../../bin/sra-pileup /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/depend -make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-pileup.3.2.1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake 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-O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/copycat/CMakeFiles/copycat.dir/kff/ffmagic.c.o -MF CMakeFiles/copycat.dir/kff/ffmagic.c.o.d -o CMakeFiles/copycat.dir/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f crc32sum.3.2.1 +make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-factory /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-pileup sra-pileup.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-pileup.3.2.1 sra-pileup.3 -[ 47%] Building C object tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-pileup.3 sra-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld/CMakeFiles/testld.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-correct.dir/link.d "CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o" -o ../../../bin/pacbio-correct /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-correct.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv crc32sum crc32sum.3.2.1 +[ 47%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o +[ 47%] Built target read-filter-redact +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-correct pacbio-correct.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/col_by_col.c.o -MF CMakeFiles/vdb-diff.dir/col_by_col.c.o.d -o CMakeFiles/vdb-diff.dir/col_by_col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/col_by_col.c [ 47%] Building C object tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 sra-pileup-driver +[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/samview-util/CMakeFiles/samview-util.dir/samview.c.o -MF CMakeFiles/samview-util.dir/samview.c.o.d -o CMakeFiles/samview-util.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/samview-util/samview.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-correct.3.2.1 pacbio-correct.3 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/txt2kdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/redactval.c.o -MF CMakeFiles/vdb-copy.dir/redactval.c.o.d -o CMakeFiles/vdb-copy.dir/redactval.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/redactval.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s crc32sum.3.2.1 crc32sum.3 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/testld/CMakeFiles/testld.dir/build.make tools/test-tools/testld/CMakeFiles/testld.dir/build [ 47%] Building C object tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/internal/vdb-diff\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-diff/CMakeFiles/vdb-diff.dir/vdb-diff.c.o -MF CMakeFiles/vdb-diff.dir/vdb-diff.c.o.d -o CMakeFiles/vdb-diff.dir/vdb-diff.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-diff/vdb-diff.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-correct.3 pacbio-correct +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s crc32sum.3 crc32sum make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-download.dir/link.d "CMakeFiles/test-download.dir/test-download.c.o" -o ../../../bin/test-download /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 47%] Building C object tools/test-tools/testld/CMakeFiles/testld.dir/testld.c.o +[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o +cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/testld/testld.c make -f tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build.make tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/config_values.c.o -MF CMakeFiles/vdb-copy.dir/config_values.c.o.d -o CMakeFiles/vdb-copy.dir/config_values.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/config_values.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 47%] Built target sra-pileup +[ 47%] Building C object tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o +[ 47%] Built target crc32sum +make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/schema-replace.dir/link.d "CMakeFiles/schema-replace.dir/schema-replace.c.o" -o ../../../bin/schema-replace /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 47%] Built target pacbio-correct +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-factory /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f schema-replace.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-copy\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/internal/vdb-copy/CMakeFiles/vdb-copy.dir/vdb-copy.c.o -MF CMakeFiles/vdb-copy.dir/vdb-copy.c.o.d -o CMakeFiles/vdb-copy.dir/vdb-copy.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv test-download test-download.3.2.1 make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/depend -[ 47%] Building CXX object tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o -MF CMakeFiles/sam-factory.dir/sam-factory.cpp.o.d -o CMakeFiles/sam-factory.dir/sam-factory.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-factory/sam-factory.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-sra.dir/link.d "CMakeFiles/test-sra.dir/test-sra.c.o" "CMakeFiles/test-sra.dir/unix/PrintOS.c.o" -o ../../../bin/test-sra ../../../ilib/libascp.a ../../../ilib/libdiagnose.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv schema-replace schema-replace.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-sra.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s schema-replace.3.2.1 schema-replace.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv test-sra test-sra.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sortreadtest.dir/link.d CMakeFiles/sortreadtest.dir/sortreadtest.c.o -o ../../../bin/sortreadtest /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-download.3.2.1 test-download.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sortreadtest.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-sra.3.2.1 test-sra.3 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build.make tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s schema-replace.3 schema-replace +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-sra.3 test-sra [ 47%] Building C object tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/txt2kdb/CMakeFiles/txt2kdb.dir/txt2kdb.c.o -MF CMakeFiles/txt2kdb.dir/txt2kdb.c.o.d -o CMakeFiles/txt2kdb.dir/txt2kdb.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/txt2kdb/txt2kdb.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-download.3 test-download +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sortreadtest sortreadtest.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build.make tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/build -make -f tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build.make tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sortreadtest.3.2.1 sortreadtest.3 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build.make test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/depend +[ 47%] Building CXX object tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sortreadtest.3 sortreadtest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-factory/CMakeFiles/sam-factory.dir/sam-factory.cpp.o -MF CMakeFiles/sam-factory.dir/sam-factory.cpp.o.d -o CMakeFiles/sam-factory.dir/sam-factory.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-factory/sam-factory.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 47%] Built target test-sra +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 47%] Building CXX object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o +[ 47%] Built target schema-replace +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -MF CMakeFiles/sam-analyze.dir/main.cpp.o.d -o CMakeFiles/sam-analyze.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/main.cpp +[ 47%] Linking CXX executable ../../../bin/samview-util +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview-util.dir/link.txt --verbose=1 +make -f tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build.make tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/depend +[ 47%] Building C object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -MF CMakeFiles/sam-analyze.dir/sqlite3.c.o.d -o CMakeFiles/sam-analyze.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/sqlite3.c +[ 47%] Built target test-download make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rnd2sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rnd2sra /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/DependInfo.cmake "--color=" +make -f test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build.make test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/libs/kfile_stream /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/libs/kfile_stream /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/DependInfo.cmake "--color=" -[ 47%] Linking CXX executable ../../../bin/compute-coverage +[ 47%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o +[ 47%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o make -f test/vdb/CMakeFiles/Test_VDB.dir/build.make test/vdb/CMakeFiles/Test_VDB.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage.dir/link.txt --verbose=1 +make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb/CMakeFiles/Test_VDB.dir/DependInfo.cmake "--color=" -[ 47%] Linking CXX executable ../../../bin/meta-repair -[ 47%] Linking CXX executable ../../../bin/read-filter-redact -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/meta-repair && /usr/bin/cmake -E cmake_link_script CMakeFiles/meta-repair.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/rd-filter-redact && /usr/bin/cmake -E cmake_link_script CMakeFiles/read-filter-redact.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build.make test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/depend +[ 47%] Built target sortreadtest make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb/CMakeFiles/Test_WVDB.dir/DependInfo.cmake "--color=" -[ 47%] Building CXX object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -[ 47%] Building C object tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/main.cpp.o -MF CMakeFiles/sam-analyze.dir/main.cpp.o.d -o CMakeFiles/sam-analyze.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/main.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o -MF CMakeFiles/ngs.dir/NGS_String.c.o.d -o CMakeFiles/ngs.dir/NGS_String.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_String.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o -MF CMakeFiles/ngs.dir/NGS_Id.c.o.d -o CMakeFiles/ngs.dir/NGS_Id.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_Id.c make -f tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build.make tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/test-tools/sam-analyze/CMakeFiles/sam-analyze.dir/sqlite3.c.o -MF CMakeFiles/sam-analyze.dir/sqlite3.c.o.d -o CMakeFiles/sam-analyze.dir/sqlite3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/sam-analyze/sqlite3.c make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/vdb/CMakeFiles/Test_VDB.dir/build.make test/vdb/CMakeFiles/Test_VDB.dir/build -[ 47%] Building CXX object test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o +make -f test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build.make test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/schema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/schema/CMakeFiles/Test_SraSchema_Unit.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 47%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -MF CMakeFiles/ngs.dir/NGS_ErrBlock.c.o.d -o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ErrBlock.c +[ 48%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlob.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/vdb/CMakeFiles/Test_VDB.dir/build.make test/vdb/CMakeFiles/Test_VDB.dir/build +[ 48%] Building CXX object tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o +[ 48%] Building CXX object test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/libs/kfile_stream && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/libs/kfile_stream/CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -MF CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o.d -o CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/libs/kfile_stream/custom_stream.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -MF CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o.d -o CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rnd2sra/src/rnd2sra.cpp +make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/vdb/CMakeFiles/Test_WVDB.dir/build.make test/vdb/CMakeFiles/Test_WVDB.dir/build +[ 48%] Linking CXX executable ../../../bin/rowwritetest +[ 48%] Building CXX object test/vdb/CMakeFiles/Test_VDB.dir/test-vdb.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cmake -E cmake_link_script CMakeFiles/rowwritetest.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 47%] Linking CXX executable ../../../bin/copycat -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/copycat.dir/link.txt --verbose=1 -[ 47%] Linking CXX executable ../../../bin/pacbio-correct -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pacbio-correct && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-correct.dir/link.txt --verbose=1 -[ 47%] Building CXX object tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/rnd2sra/CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -MF CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o.d -o CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/rnd2sra/src/rnd2sra.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/crc32sum.dir/link.d CMakeFiles/crc32sum.dir/crc32sum.c.o -o ../../../bin/crc32sum /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f crc32sum.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/make-read-filter.dir/link.d "CMakeFiles/make-read-filter.dir/make-read-filter.c.o" -o ../../../bin/make-read-filter /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 47%] Building CXX object test/vdb/CMakeFiles/Test_VDB.dir/test-vdb.cpp.o -[ 48%] Linking CXX executable ../../../bin/sortreadtest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sortreadtest && /usr/bin/cmake -E cmake_link_script CMakeFiles/sortreadtest.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f make-read-filter.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD 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-lmbedcrypto +[ 48%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_FragmentBlobIterator.c +[ 48%] Building CXX object test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/schema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -MF CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o.d -o CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema/test-schema.cpp [ 48%] Building CXX object test/vdb/CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/vdb/CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -MF CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o.d -o CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/vdb/test-wvdb.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s crc32sum.3.2.1 crc32sum.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s make-read-filter.3.2.1 make-read-filter.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kdb-index.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s crc32sum.3 crc32sum -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s make-read-filter.3 make-read-filter -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kdb-index kdb-index.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdb-index.3.2.1 kdb-index.3 -make -f test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build.make test/schema/CMakeFiles/Test_SraSchema_Unit.dir/build +[ 48%] Linking CXX executable ../../../bin/testld +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld && /usr/bin/cmake -E cmake_link_script CMakeFiles/testld.dir/link.txt --verbose=1 make -f test/search/CMakeFiles/Test_SEARCH_agrep.dir/build.make test/search/CMakeFiles/Test_SEARCH_agrep.dir/depend -[ 48%] Linking CXX executable ../../../bin/samview-util -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kdb-index.3 kdb-index make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/samview-util && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview-util.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search/CMakeFiles/Test_SEARCH_agrep.dir/DependInfo.cmake "--color=" +[ 48%] Linking CXX executable ../../../bin/vdb-diff +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-diff.dir/link.txt --verbose=1 +[ 48%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlob.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/search/CMakeFiles/Test_SEARCH_agrep.dir/build.make test/search/CMakeFiles/Test_SEARCH_agrep.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search/CMakeFiles/Test_SEARCH_agrep.dir/DependInfo.cmake "--color=" +[ 48%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -MF CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o.d -o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/NGS_ReferenceBlobIterator.c +[ 48%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o +[ 48%] Linking CXX executable ../../../bin/copycat +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/copycat.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/test-agrep.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samview-util.dir/link.d "CMakeFiles/samview-util.dir/samview.c.o" -o ../../../bin/samview-util /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f samview-util.3.2.1 +[ 48%] Building C object ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv samview-util samview-util.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o -MF CMakeFiles/ngs.dir/VByteBlob.c.o.d -o CMakeFiles/ngs.dir/VByteBlob.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs/VByteBlob.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview-util.3.2.1 samview-util.3 +[ 48%] Building C object test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview-util.3 samview-util +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -MF CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 48%] Linking CXX executable ../../../bin/schema-replace -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/schema-replace && /usr/bin/cmake -E cmake_link_script CMakeFiles/schema-replace.dir/link.txt --verbose=1 -[ 48%] Linking CXX executable ../../../bin/test-download -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/test-download && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-download.dir/link.txt --verbose=1 -[ 48%] Built target crc32sum -[ 48%] Built target kdb-index +[ 48%] Linking CXX executable ../../../bin/txt2kdb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/txt2kdb.dir/link.txt --verbose=1 make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/depend -make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rowwritetest.dir/link.d CMakeFiles/rowwritetest.dir/rowwritetest.c.o -o ../../../bin/rowwritetest /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f rowwritetest.3.2.1 +[ 48%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o +make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/search-vdb.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv rowwritetest rowwritetest.3.2.1 +[ 48%] Built target samview-util +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rowwritetest.3.2.1 rowwritetest.3 make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/align-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/align-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/align-info/CMakeFiles/Build-align-info.dir/DependInfo.cmake "--color=" -[ 48%] Building CXX object test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/schema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/schema/CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -MF CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o.d -o CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/schema/test-schema.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/DependInfo.cmake "--color=" -[ 48%] Built target make-read-filter -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/depend -[ 48%] Linking CXX executable ../../../bin/align-cache -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/align-cache && /usr/bin/cmake -E cmake_link_script CMakeFiles/align-cache.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rowwritetest.3 rowwritetest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/search/CMakeFiles/Test_SEARCH_agrep.dir/build.make test/search/CMakeFiles/Test_SEARCH_agrep.dir/build make -f test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build.make test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 48%] Linking CXX executable ../../../bin/testld -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/align-info/CMakeFiles/Build-align-info.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/testld && /usr/bin/cmake -E cmake_link_script CMakeFiles/testld.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/build -[ 48%] Built target Build-align-info -[ 48%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/depend -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/test-agrep.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/DependInfo.cmake "--color=" -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/DependInfo.cmake "--color=" [ 49%] Building Java objects for test-ngs-java.jar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_sources -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -MF CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o.d -o CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-filepath.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 49%] Linking CXX executable ../../../bin/rowwritetest -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/meta-repair.dir/link.d "CMakeFiles/meta-repair.dir/meta-repair.c.o" -o ../../../bin/meta-repair /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rowwritetest && /usr/bin/cmake -E cmake_link_script CMakeFiles/rowwritetest.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/read-filter-redact.dir/link.d "CMakeFiles/read-filter-redact.dir/read-filter-redact.c.o" -o ../../../bin/read-filter-redact /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -[ 49%] Linking CXX executable ../../../bin/vdb-diff -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f read-filter-redact.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f meta-repair.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-diff && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-diff.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-run-source.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv read-filter-redact read-filter-redact.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/compute-coverage.dir/link.d "CMakeFiles/compute-coverage.dir/compute-coverage.cpp.o" -o ../../../bin/compute-coverage ../../../ilib/libtk-version.a -lkapp /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f compute-coverage.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv meta-repair meta-repair.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-repair.3.2.1 meta-repair.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv compute-coverage compute-coverage.3.2.1 -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/copycat.dir/link.d CMakeFiles/copycat.dir/copycat.c.o CMakeFiles/copycat.dir/ccfileformat.c.o CMakeFiles/copycat.dir/cccat.c.o CMakeFiles/copycat.dir/cctree.c.o "CMakeFiles/copycat.dir/cctree-dump.c.o" CMakeFiles/copycat.dir/cctar.c.o CMakeFiles/copycat.dir/ccsra.c.o CMakeFiles/copycat.dir/ccsubchunk.c.o CMakeFiles/copycat.dir/ccfile.c.o CMakeFiles/copycat.dir/kff/fileformat.c.o CMakeFiles/copycat.dir/kff/ffext.c.o CMakeFiles/copycat.dir/kff/ffkey.c.o CMakeFiles/copycat.dir/kff/ffmagic.c.o -o ../../../bin/copycat /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libmagic.so -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s meta-repair.3 meta-repair -[ 49%] Building C object test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s compute-coverage.3.2.1 compute-coverage.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-tool-args.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s read-filter-redact.3.2.1 read-filter-redact.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f copycat.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -MF CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s read-filter-redact.3 read-filter-redact -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv copycat copycat.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s compute-coverage.3 compute-coverage -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s copycat.3.2.1 copycat.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s copycat.3 copycat -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 49%] Built target read-filter-redact -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sortreadtest.dir/link.d CMakeFiles/sortreadtest.dir/sortreadtest.c.o -o ../../../bin/sortreadtest /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sortreadtest.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sortreadtest sortreadtest.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sortreadtest.3.2.1 sortreadtest.3 -[ 49%] Linking CXX executable ../../../bin/txt2kdb -[ 49%] Built target meta-repair -[ 49%] Built target compute-coverage -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/txt2kdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/txt2kdb.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samview-util.dir/link.d "CMakeFiles/samview-util.dir/samview.c.o" -o ../../../bin/samview-util /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 49%] Built target copycat -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sortreadtest.3 sortreadtest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f samview-util.3.2.1 -[ 49%] Building CXX object test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/search/CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -MF CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o.d -o CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/search-vdb.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testld.dir/link.d CMakeFiles/testld.dir/testld.c.o -o ../../../bin/testld /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f testld.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv samview-util samview-util.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-download.dir/link.d "CMakeFiles/test-download.dir/test-download.c.o" -o ../../../bin/test-download /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-download.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview-util.3.2.1 samview-util.3 -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/schema-replace.dir/link.d "CMakeFiles/schema-replace.dir/schema-replace.c.o" -o ../../../bin/schema-replace /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv test-download test-download.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-correct.dir/link.d "CMakeFiles/pacbio-correct.dir/pacbio-correct.c.o" -o ../../../bin/pacbio-correct /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f schema-replace.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview-util.3 samview-util /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c: In function 'main_agrep_test': /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:229:13: warning: variable 'slow' set but not used [-Wunused-but-set-variable] 229 | int32_t slow = 0; @@ -4604,385 +4626,294 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:228:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 228 | int32_t count; | ^~~~~ -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-correct.3.2.1 -[ 49%] Built target sortreadtest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv schema-replace schema-replace.3.2.1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-download.3.2.1 test-download.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s schema-replace.3.2.1 schema-replace.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-download.3 test-download -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s schema-replace.3 schema-replace -make -f test/external/prefetch/CMakeFiles/Build-prefetch.dir/build.make test/external/prefetch/CMakeFiles/Build-prefetch.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-correct pacbio-correct.3.2.1 +make -f test/external/align-info/CMakeFiles/Build-align-info.dir/build.make test/external/align-info/CMakeFiles/Build-align-info.dir/build +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -MF CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o.d -o CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-filepath.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv testld testld.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch/CMakeFiles/Build-prefetch.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-correct.3.2.1 pacbio-correct.3 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testld.dir/link.d CMakeFiles/testld.dir/testld.c.o -o ../../../bin/testld /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-correct.3 pacbio-correct -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f testld.3.2.1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/align-info/CMakeFiles/Build-align-info.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 49%] Built target samview-util -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv testld testld.3.2.1 -[ 49%] Built target schema-replace -make -f test/external/prefetch/CMakeFiles/test-quality.dir/build.make test/external/prefetch/CMakeFiles/test-quality.dir/depend +[ 49%] Built target rowwritetest +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s testld.3.2.1 testld.3 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch/CMakeFiles/test-quality.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s testld.3 testld -[ 49%] Built target test-download -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/prefetch/CMakeFiles/Build-prefetch.dir/build.make test/external/prefetch/CMakeFiles/Build-prefetch.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar:/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java/junit-4.11.jar -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_sources make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/prefetch/CMakeFiles/Build-prefetch.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/DependInfo.cmake "--color=" +make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/kdbmeta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/DependInfo.cmake "--color=" +[ 49%] Built target testld +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o +make -f test/external/prefetch/CMakeFiles/Build-prefetch.dir/build.make test/external/prefetch/CMakeFiles/Build-prefetch.dir/depend /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-diff.dir/link.d "CMakeFiles/vdb-diff.dir/namelist_tools.c.o" "CMakeFiles/vdb-diff.dir/coldefs.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff-context.c.o" "CMakeFiles/vdb-diff.dir/cmn.c.o" "CMakeFiles/vdb-diff.dir/row_by_row.c.o" "CMakeFiles/vdb-diff.dir/col_by_col.c.o" "CMakeFiles/vdb-diff.dir/vdb-diff.c.o" -o ../../../bin/vdb-diff /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 49%] Built target pacbio-correct -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/align-cache.dir/link.d "CMakeFiles/align-cache.dir/align-cache.cpp.o" "CMakeFiles/align-cache.dir/helper.cpp.o" -o ../../../bin/align-cache /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch/CMakeFiles/Build-prefetch.dir/DependInfo.cmake "--color=" +[ 49%] Built target Build-align-info cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-diff.3.2.1 -make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f align-cache.3.2.1 -[ 49%] Built target Build-kdbmeta +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-run-source.cpp +make -f test/external/prefetch/CMakeFiles/test-quality.dir/build.make test/external/prefetch/CMakeFiles/test-quality.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-diff vdb-diff.3.2.1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/srapath/CMakeFiles/Build-srapath.dir/DependInfo.cmake "--color=" -make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-diff.3.2.1 vdb-diff.3 -[ 49%] Built target Build-prefetch make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/DependInfo.cmake "--color=" -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch/CMakeFiles/test-quality.dir/DependInfo.cmake "--color=" +make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/depend +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/srapath /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/srapath/CMakeFiles/Build-srapath.dir/DependInfo.cmake "--color=" +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-diff.3 vdb-diff -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv align-cache align-cache.3.2.1 -make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-cache.3.2.1 align-cache.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp +make -f test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build.make test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/build +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/prefetch/CMakeFiles/test-quality.dir/build.make test/external/prefetch/CMakeFiles/test-quality.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s align-cache.3 align-cache make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/srapath/CMakeFiles/Build-srapath.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/copycat.dir/link.d CMakeFiles/copycat.dir/copycat.c.o CMakeFiles/copycat.dir/ccfileformat.c.o CMakeFiles/copycat.dir/cccat.c.o CMakeFiles/copycat.dir/cctree.c.o "CMakeFiles/copycat.dir/cctree-dump.c.o" CMakeFiles/copycat.dir/cctar.c.o CMakeFiles/copycat.dir/ccsra.c.o CMakeFiles/copycat.dir/ccsubchunk.c.o CMakeFiles/copycat.dir/ccfile.c.o CMakeFiles/copycat.dir/kff/fileformat.c.o CMakeFiles/copycat.dir/kff/ffext.c.o CMakeFiles/copycat.dir/kff/ffkey.c.o CMakeFiles/copycat.dir/kff/ffmagic.c.o -o ../../../bin/copycat /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libmagic.so +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f copycat.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv copycat copycat.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s copycat.3.2.1 copycat.3 +make -f test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build.make test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s copycat.3 copycat make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 49%] Built target testld -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o +make[3]: Nothing to be done for 'test/external/kdbmeta/CMakeFiles/Build-kdbmeta.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp +make -f test/external/prefetch/CMakeFiles/Build-prefetch.dir/build.make test/external/prefetch/CMakeFiles/Build-prefetch.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build'. +make[3]: Nothing to be done for 'test/external/prefetch/CMakeFiles/Build-prefetch.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 49%] Built target Build-srapath -[ 49%] Built target vdb-diff +make -f test/external/prefetch/CMakeFiles/test-quality.dir/build.make test/external/prefetch/CMakeFiles/test-quality.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build +[ 49%] Linking C static library ../../../ilib/libngs.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -P CMakeFiles/ngs.dir/cmake_clean_target.cmake make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/srapath/CMakeFiles/Build-srapath.dir/build.make test/external/srapath/CMakeFiles/Build-srapath.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/srapath/CMakeFiles/Build-srapath.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 49%] Building CXX object test/external/prefetch/CMakeFiles/test-quality.dir/test-quality.cpp.o +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/prefetch\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/prefetch/CMakeFiles/test-quality.dir/test-quality.cpp.o -MF CMakeFiles/test-quality.dir/test-quality.cpp.o.d -o CMakeFiles/test-quality.dir/test-quality.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/prefetch/test-quality.cpp -[ 49%] Built target align-cache -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/SDL-response.cpp -[ 49%] Built target Build-sra-pileup -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp -make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-tool-args.cpp +[ 49%] Built target Build-kdbmeta +[ 49%] Built target vdb-diff +[ 49%] Built target copycat +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs.dir/link.txt --verbose=1 +make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/DependInfo.cmake "--color=" +[ 49%] Built target Build-prefetch +make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/depend /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/txt2kdb.dir/link.d CMakeFiles/txt2kdb.dir/txt2kdb.c.o -o ../../../bin/txt2kdb /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f txt2kdb.3.2.1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv txt2kdb txt2kdb.3.2.1 -[ 49%] Linking CXX executable ../../../bin/vdb-copy +[ 49%] Built target Build-srapath cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s txt2kdb.3.2.1 txt2kdb.3 -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-copy.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/DependInfo.cmake "--color=" +make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s txt2kdb.3 txt2kdb -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rowwritetest.dir/link.d CMakeFiles/rowwritetest.dir/rowwritetest.c.o -o ../../../bin/rowwritetest /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/DependInfo.cmake "--color=" +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp +make -f test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build.make test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/sra-pileup/CMakeFiles/Build-sra-pileup.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f rowwritetest.3.2.1 -[ 49%] Building CXX object test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv rowwritetest rowwritetest.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -MF CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o.d -o CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat/testAssemblyStatistics.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rowwritetest.3.2.1 rowwritetest.3 -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/command-line.cpp +[ 49%] Built target Build-sra-pileup make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 49%] Built target txt2kdb +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build.make test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build.make test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp -[ 49%] Built target txt2kdb -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s rowwritetest.3 rowwritetest make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/depend +[ 49%] Linking CXX executable ../../../bin/vdb-copy +[ 49%] Building CXX object test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-copy.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-stat/CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -MF CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o.d -o CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat/testAssemblyStatistics.cpp +/usr/bin/ar qc ../../../ilib/libngs.a "CMakeFiles/ngs.dir/NCBI-NGS.c.o" CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o CMakeFiles/ngs.dir/CSRA1_Pileup.c.o CMakeFiles/ngs.dir/CSRA1_Alignment.c.o CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o CMakeFiles/ngs.dir/CSRA1_Reference.c.o CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o CMakeFiles/ngs.dir/CSRA1_Read.c.o CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o CMakeFiles/ngs.dir/SRA_Statistics.c.o CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_Read.c.o CMakeFiles/ngs.dir/SRA_ReadGroup.c.o CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o CMakeFiles/ngs.dir/SRA_ReadCollection.c.o CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Statistics.c.o CMakeFiles/ngs.dir/NGS_ReadCollection.c.o CMakeFiles/ngs.dir/NGS_PileupEvent.c.o CMakeFiles/ngs.dir/NGS_Pileup.c.o CMakeFiles/ngs.dir/NGS_ReadGroup.c.o CMakeFiles/ngs.dir/NGS_Alignment.c.o CMakeFiles/ngs.dir/NGS_Reference.c.o CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o CMakeFiles/ngs.dir/NGS_Read.c.o CMakeFiles/ngs.dir/NGS_Fragment.c.o CMakeFiles/ngs.dir/NGS_Cursor.c.o CMakeFiles/ngs.dir/NGS_Refcount.c.o CMakeFiles/ngs.dir/NGS_String.c.o CMakeFiles/ngs.dir/NGS_Id.c.o CMakeFiles/ngs.dir/NGS_ErrBlock.c.o CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o CMakeFiles/ngs.dir/VByteBlob.c.o +/usr/bin/ranlib ../../../ilib/libngs.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/DependInfo.cmake "--color=" [ 49%] Building CXX object test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o +[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-config/CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -MF CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o.d -o CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config/test-vdb-config-model.cpp -[ 49%] Built target rowwritetest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 49%] Linking CXX executable ../../../test-bin/Test_Drivertool_SDLResponse make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_SDLResponse.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 49%] Built target ngs +make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 49%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/test-view-spec.cpp -[ 49%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp [ 49%] Linking CXX executable ../../../test-bin/test-quality cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/prefetch && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-quality.dir/link.txt --verbose=1 +[ 49%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/test-view-alias.cpp +[ 50%] Linking CXX executable ../../../bin/vdb-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-copy.dir/link.d "CMakeFiles/vdb-copy.dir/context.c.o" "CMakeFiles/vdb-copy.dir/helper.c.o" "CMakeFiles/vdb-copy.dir/coldefs.c.o" "CMakeFiles/vdb-copy.dir/get_platform.c.o" "CMakeFiles/vdb-copy.dir/copy_meta.c.o" "CMakeFiles/vdb-copy.dir/type_matcher.c.o" "CMakeFiles/vdb-copy.dir/redactval.c.o" "CMakeFiles/vdb-copy.dir/config_values.c.o" "CMakeFiles/vdb-copy.dir/vdb-copy.c.o" -o ../../../bin/vdb-copy /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-copy.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-copy vdb-copy.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_SDLResponse.dir/link.d "CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o" -o ../../../test-bin/Test_Drivertool_SDLResponse -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-copy.3.2.1 vdb-copy.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-copy.3 vdb-copy cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/vdb-copy && /usr/bin/cmake -E copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/vdb-copy/vdb-copy.kfg /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/ncbi/vdb-copy.kfg -[ 49%] Built target Test_Drivertool_SDLResponse make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 50%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -[ 50%] Built target vdb-copy -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp -[ 50%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c -[ 50%] Linking CXX executable ../../../bin/sam-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-dump.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-quality.dir/link.d "CMakeFiles/test-quality.dir/test-quality.cpp.o" -o ../../../test-bin/test-quality /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 50%] Built target vdb-copy make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 51%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -[ 51%] Linking CXX executable ../../../bin/qa-stats -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qa-stats.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-helper.c -[ 51%] Built target test-quality -[ 51%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-context.c -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-run-source.cpp:38: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-dump.dir/link.d "CMakeFiles/sam-dump.dir/inputfiles.c.o" "CMakeFiles/sam-dump.dir/perf_log.c.o" "CMakeFiles/sam-dump.dir/rna_splice_log.c.o" "CMakeFiles/sam-dump.dir/sam-dump-opts.c.o" "CMakeFiles/sam-dump.dir/out_redir.c.o" "CMakeFiles/sam-dump.dir/sam-hdr.c.o" "CMakeFiles/sam-dump.dir/sam-hdr1.c.o" "CMakeFiles/sam-dump.dir/matecache.c.o" "CMakeFiles/sam-dump.dir/read_fkt.c.o" "CMakeFiles/sam-dump.dir/sam-aligned.c.o" "CMakeFiles/sam-dump.dir/sam-unaligned.c.o" "CMakeFiles/sam-dump.dir/md_flag.c.o" "CMakeFiles/sam-dump.dir/cg_tools.c.o" "CMakeFiles/sam-dump.dir/sam-dump.c.o" "CMakeFiles/sam-dump.dir/sam-dump3.c.o" "CMakeFiles/sam-dump.dir/dyn_string.c.o" -o ../../../bin/sam-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sam-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sam-dump sam-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sam-dump.3.2.1 sam-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sam-dump.3 sam-dump -[ 51%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 sam-dump-driver -[ 52%] Linking CXX executable ../../../bin/vdb-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/qa-stats.dir/link.d "CMakeFiles/qa-stats.dir/main.cpp.o" "CMakeFiles/qa-stats.dir/input.cpp.o" -o ../../../bin/qa-stats -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 52%] Built target qa-stats -make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build.make test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 52%] Building CXX object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -MF CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o.d -o CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/test-view-alias.cpp -[ 52%] Built target sam-dump -[ 52%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-str.c -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_parse.cpp:40: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = fmt::v9::basic_string_view&]': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = fmt::v9::basic_string_view&; typename std::enable_if::type = 0]' - 1777 | return make_value(val); - | ~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {fmt::v9::basic_string_view&, const char (&)[3]}; Context = fmt::v9::basic_format_context; Args = {fmt::v9::basic_string_view, char [3]}]' - 1899 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1900 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1901 | detail::mapped_type_constant, Context>::value>( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 1902 | FMT_FORWARD(args))...} { - | ~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'OutputIt fmt::v9::format_to(OutputIt, format_string, T&& ...) [with OutputIt = appender; T = {basic_string_view&, const char (&)[3]}; typename std::enable_if::value, int>::type = 0; format_string = basic_format_string&, const char (&)[3]>]' - 1918 | return {FMT_FORWARD(args)...}; - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/format-inl.h:65:14: required from here - 65 | format_to(it, FMT_STRING("{}{}"), message, SEP); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3235:52: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const fmt::v9::basic_string_view*)(& val)))' - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-dump.dir/link.d "CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o" "CMakeFiles/vdb-dump.dir/vdb_info.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump.c.o" -o ../../../bin/vdb-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-dump.3.2.1 -[ 52%] Linking CXX executable ../../test-bin/Test_SraSchema_Unit -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-dump vdb-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSchema_Unit.dir/link.txt --verbose=1 make -f test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build.make test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-dump.3.2.1 vdb-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-dump.3 vdb-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 vdb-dump-driver -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 52%] Built target vdb-dump +[ 50%] Built target test-quality make -f test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build.make test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/depend -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = std::__cxx11::basic_string&]': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = std::__cxx11::basic_string&; typename std::enable_if::type = 0]' - 1777 | return make_value(val); - | ~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {std::__cxx11::basic_string, std::allocator >&, int&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >, int}]' - 1899 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1900 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1901 | detail::mapped_type_constant, Context>::value>( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 1902 | FMT_FORWARD(args))...} { - | ~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'std::string fmt::v9::format(format_string, T&& ...) [with T = {std::__cxx11::basic_string, std::allocator >&, int&}; std::string = std::__cxx11::basic_string; format_string = basic_format_string, std::allocator >&, int&>]' - 1918 | return {FMT_FORWARD(args)...}; - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_error.hpp:115:36: required from here - 115 | mMessage += fmt::format(" [{}:{}]", fname, line_number); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3206:44: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const std::__cxx11::basic_string*)(& val)))' - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = const std::__cxx11::basic_string&]': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = const std::__cxx11::basic_string&; typename std::enable_if::type = 0]' - 1777 | return make_value(val); - | ~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >}]' - 1899 | data_{detail::make_arg< - | ~~~~~~~~~~~~~~~~~ - 1900 | is_packed, Context, - | ~~~~~~~~~~~~~~~~~~~ - 1901 | detail::mapped_type_constant, Context>::value>( - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ - 1902 | FMT_FORWARD(args))...} { - | ~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'std::string fmt::v9::format(format_string, T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&}; std::string = std::__cxx11::basic_string; format_string = basic_format_string, std::allocator >&>]' - 1918 | return {FMT_FORWARD(args)...}; - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_error.hpp:131:30: required from here - 131 | os << fmt::format("{:<70}", std::get<1>(it.second)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3206:44: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0)' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((* & val))' - 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build.make test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build.make test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 50%] Building CXX object test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -MF CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o.d -o CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate/test-vdb-validate.cpp +[ 50%] Built target Build-vdb-validate make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/DependInfo.cmake "--color=" -[ 52%] Building CXX object test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build.make test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-validate\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-validate -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-validate/CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -MF CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o.d -o CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-validate/test-vdb-validate.cpp +make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-dump.dir/link.d "CMakeFiles/vdb-dump.dir/vdb-dump-context.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-coldefs.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-tools.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-str.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-helper.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-formats.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-redir.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-fastq.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-view-spec.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump-inspect.c.o" "CMakeFiles/vdb-dump.dir/vdb_info.c.o" "CMakeFiles/vdb-dump.dir/vdb-dump.c.o" -o ../../../bin/vdb-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-dump.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/vdb-validate/CMakeFiles/Build-vdb-validate.dir/build'. +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-dump vdb-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-dump.3.2.1 vdb-dump.3 +[ 51%] Building CXX object test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -MF CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o.d -o CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/test-sra-info.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-dump.3 vdb-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 vdb-dump-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 52%] Built target Build-vdb-validate +[ 51%] Built target vdb-dump make -f test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build.make test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build.make test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 52%] Building C object test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o +[ 51%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-view-spec.c +[ 51%] Building C object test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/loaders/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -MF CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o.d -o CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/qfiletest.c -make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/depend -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build.make test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/test-run-source.cpp:38: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +[ 51%] Linking CXX executable ../../test-bin/Test_SraSchema_Unit +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/schema && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSchema_Unit.dir/link.txt --verbose=1 +[ 52%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-helper.c +[ 52%] Linking CXX executable ../../../bin/sam-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-dump.dir/link.txt --verbose=1 +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.hpp:39, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp:51: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' + 82 | for (auto ext : make_sequence(&extensions[1], 3)) { + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 53%] Linking CXX executable ../../../test-bin/Test_KAPP_qfile +[ 53%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KAPP_qfile.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-context.c +[ 53%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -MF CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o.d -o CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/file-path.posix.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSchema_Unit.dir/link.d "CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o" -o ../../test-bin/Test_SraSchema_Unit ../../ilib/libsra.a -lkapp /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-dump.dir/link.d "CMakeFiles/sam-dump.dir/inputfiles.c.o" "CMakeFiles/sam-dump.dir/perf_log.c.o" "CMakeFiles/sam-dump.dir/rna_splice_log.c.o" "CMakeFiles/sam-dump.dir/sam-dump-opts.c.o" "CMakeFiles/sam-dump.dir/out_redir.c.o" "CMakeFiles/sam-dump.dir/sam-hdr.c.o" "CMakeFiles/sam-dump.dir/sam-hdr1.c.o" "CMakeFiles/sam-dump.dir/matecache.c.o" "CMakeFiles/sam-dump.dir/read_fkt.c.o" "CMakeFiles/sam-dump.dir/sam-aligned.c.o" "CMakeFiles/sam-dump.dir/sam-unaligned.c.o" "CMakeFiles/sam-dump.dir/md_flag.c.o" "CMakeFiles/sam-dump.dir/cg_tools.c.o" "CMakeFiles/sam-dump.dir/sam-dump.c.o" "CMakeFiles/sam-dump.dir/sam-dump3.c.o" "CMakeFiles/sam-dump.dir/dyn_string.c.o" -o ../../../bin/sam-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sam-dump.3.2.1 +[ 53%] Built target Test_SraSchema_Unit +make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sam-dump sam-dump.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 54%] Building CXX object test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/sra-info\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-info -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/sra-info/CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -MF CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o.d -o CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info/test-sra-info.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sam-dump.3.2.1 sam-dump.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sam-dump.3 sam-dump make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/depend -[ 54%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader/CMakeFiles/Test_LOADER.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/loaders/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -MF CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o.d -o CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/test-loaderfile.cpp -[ 54%] Linking CXX executable ../../../bin/test-sra -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/test-sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-sra.dir/link.txt --verbose=1 +make -f test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 sam-dump-driver +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/loaders/loader/CMakeFiles/Test_LOADER.dir/build.make test/loaders/loader/CMakeFiles/Test_LOADER.dir/build +[ 53%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/loaders/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -MF CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o.d -o CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/test-loaderfile.cpp +[ 53%] Built target sam-dump make -f test/loaders/sharq/CMakeFiles/test-regexpr.dir/build.make test/loaders/sharq/CMakeFiles/test-regexpr.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq/CMakeFiles/test-regexpr.dir/DependInfo.cmake "--color=" -[ 54%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o +[ 53%] Building CXX object test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/loaders/loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/loader/CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -MF CMakeFiles/Test_LOADER.dir/loadertest.cpp.o.d -o CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KAPP_qfile.dir/link.d CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -o ../../../test-bin/Test_KAPP_qfile ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 53%] Linking CXX executable ../../../test-bin/Test_Drivertool_SDLResponse +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_SDLResponse.dir/link.txt --verbose=1 make -f test/loaders/sharq/CMakeFiles/test-regexpr.dir/build.make test/loaders/sharq/CMakeFiles/test-regexpr.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 54%] Building CXX object test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/include -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -MF CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o.d -o CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-regexpr.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSchema_Unit.dir/link.d "CMakeFiles/Test_SraSchema_Unit.dir/test-schema.cpp.o" -o ../../test-bin/Test_SraSchema_Unit ../../ilib/libsra.a -lkapp /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 54%] Built target Test_SraSchema_Unit -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KAPP_qfile.dir/link.d CMakeFiles/Test_KAPP_qfile.dir/qfiletest.c.o -o ../../../test-bin/Test_KAPP_qfile ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 53%] Built target Test_KAPP_qfile make -f test/internal/align/CMakeFiles/Test_Align_samextract.dir/build.make test/internal/align/CMakeFiles/Test_Align_samextract.dir/depend +[ 53%] Building CXX object test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/include -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -MF CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o.d -o CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-regexpr.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align/CMakeFiles/Test_Align_samextract.dir/DependInfo.cmake "--color=" +[ 53%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-alias +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-alias.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/internal/align/CMakeFiles/Test_Align_samextract.dir/build.make test/internal/align/CMakeFiles/Test_Align_samextract.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/depend -make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align-cache/CMakeFiles/Build-align-cache.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat/CMakeFiles/Build-copycat.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-sra.dir/link.d "CMakeFiles/test-sra.dir/test-sra.c.o" "CMakeFiles/test-sra.dir/unix/PrintOS.c.o" -o ../../../bin/test-sra ../../../ilib/libascp.a ../../../ilib/libdiagnose.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 54%] Building CXX object test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f test-sra.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/align\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/../ncbi-vdb/interfaces/ext -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -MF CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o.d -o CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align/test-samextract.cpp /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:307:117: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 307 | REQUIRE_RC ( KLoaderMeta_Write ( node, LoaderName.c_str(), __DATE__, FormatterName.c_str(), KAppVersion() ) ); | ^ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv test-sra test-sra.3.2.1 /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:321:80: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 321 | REQUIRE_EQ ( string ( __DATE__), GetMetadata ( "SOFTWARE/loader", "date" ) ); | ^ @@ -4992,969 +4923,1089 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/loader/loadertest.cpp:364:80: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 364 | REQUIRE_EQ ( string ( __DATE__), GetMetadata ( "SOFTWARE/loader", "date" ) ); | ^ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-sra.3.2.1 test-sra.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s test-sra.3 test-sra +[ 53%] Building CXX object test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/align\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/../ncbi-vdb/interfaces/ext -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/align/CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -MF CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o.d -o CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align/test-samextract.cpp +[ 53%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/json-parse.cpp +[ 53%] Linking CXX executable ../../../bin/qa-stats +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qa-stats.dir/link.txt --verbose=1 +[ 53%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-coldefs.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_SDLResponse.dir/link.d "CMakeFiles/Test_Drivertool_SDLResponse.dir/test-sdl-response.cpp.o" -o ../../../test-bin/Test_Drivertool_SDLResponse +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 53%] Built target Test_Drivertool_SDLResponse +[ 53%] Building C object test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -MF CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o.d -o CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-dump/vdb-dump-str.c +make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-alias.dir/link.d "CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o" -o ../../../test-bin/Test_Vdb_dump_view-alias /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align-cache /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align-cache/CMakeFiles/Build-align-cache.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build.make test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/sratools.hpp:31, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.hpp:39, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/run-source.cpp:51: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp: In static member function 'static const char* sratools::Accession::qualityTypeFor(const char*)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:56: warning: possibly dangling reference to a temporary [-Wdangling-reference] - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ^ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/accession.hpp:82:38: note: the temporary was destroyed at the end of the full expression 'make_sequence((& sratools::Accession::extensions[1]), 3)' - 82 | for (auto ext : make_sequence(&extensions[1], 3)) { - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/build make[3]: Nothing to be done for 'test/internal/align-cache/CMakeFiles/Build-align-cache.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 53%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/build-version.cpp +[ 53%] Built target Test_Vdb_dump_view-alias +[ 53%] Built target Build-align-cache +make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat/CMakeFiles/Build-copycat.dir/DependInfo.cmake "--color=" +[ 54%] Building CXX object test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/driver-tool/../../../tools/external/driver-tool -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/driver-tool/CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -MF CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o.d -o CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/driver-tool/tool-args.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/internal/copycat/CMakeFiles/Build-copycat.dir/build.make test/internal/copycat/CMakeFiles/Build-copycat.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/internal/copycat/CMakeFiles/Build-copycat.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 54%] Built target test-sra make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/depend +[ 54%] Built target Build-copycat make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat/CMakeFiles/Test_KFF.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 54%] Built target Build-align-cache -[ 54%] Built target Test_KAPP_qfile -[ 54%] Built target Build-copycat make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/depend -make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/read-filter-redact /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/DependInfo.cmake "--color=" +make -f test/internal/copycat/CMakeFiles/Test_KFF.dir/build.make test/internal/copycat/CMakeFiles/Test_KFF.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/qa-stats.dir/link.d "CMakeFiles/qa-stats.dir/main.cpp.o" "CMakeFiles/qa-stats.dir/input.cpp.o" -o ../../../bin/qa-stats make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/vdb-copy /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/DependInfo.cmake "--color=" -[ 54%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c -[ 54%] Building CXX object test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -MF CMakeFiles/Test_KFF.dir/kfftest.cpp.o.d -o CMakeFiles/Test_KFF.dir/kfftest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat/kfftest.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build +make -f test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build.make test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/internal/vdb-copy/CMakeFiles/Build-vdb-copy.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 54%] Built target Build-read-filter-redact +[ 54%] Building CXX object test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/kfftest.cpp.o -MF CMakeFiles/Test_KFF.dir/kfftest.cpp.o.d -o CMakeFiles/Test_KFF.dir/kfftest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/copycat/kfftest.cpp +[ 54%] Built target qa-stats [ 54%] Built target Build-vdb-copy make -f test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build.make test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/vdb-diff /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/DependInfo.cmake "--color=" -[ 55%] Linking CXX executable ../../../bin/sra-stat -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-stat.dir/link.txt --verbose=1 -[ 55%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffkey.c +make -f test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build.make test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/internal/read-filter-redact/CMakeFiles/Build-read-filter-redact.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build.make test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build +[ 54%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/internal/vdb-diff/CMakeFiles/Build-vdb-diff.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 55%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/fileformat.c -[ 55%] Built target Build-vdb-diff -[ 55%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffext.c +[ 54%] Built target Build-read-filter-redact +Note: ngs_test_lib_load.java uses unchecked or unsafe operations. +Note: Recompile with -Xlint:unchecked for details. +[ 54%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o +[ 54%] Built target Build-vdb-diff make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffkey.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-stat.dir/link.d "CMakeFiles/sra-stat.dir/assembly-statistics.c.o" "CMakeFiles/sra-stat.dir/sra.c.o" "CMakeFiles/sra-stat.dir/sra-stat.c.o" -o ../../../bin/sra-stat ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-stat.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-stat sra-stat.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-stat.3.2.1 sra-stat.3 +[ 54%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o +[ 54%] Linking CXX executable ../../test-bin/Test_WVDB +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/fileformat.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_WVDB.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 55%] Linking CXX executable ../../test-bin/Test_WVDB -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_WVDB.dir/link.txt --verbose=1 -[ 55%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o +[ 54%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-input.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-stat.3 sra-stat +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_compiled_test-ngs-java +[ 54%] Generating CMakeFiles/test-ngs-java.dir/java_class_filelist +[ 54%] Linking CXX executable ../../../test-bin/testAssemblyStatistics +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAssemblyStatistics.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake +[ 54%] Building C object test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/copycat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT test/internal/copycat/CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -MF CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o.d -o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/copycat/kff/ffmagic.c +[ 54%] Creating Java archive test-ngs-java.jar +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/test-ngs-java.jar @java_class_filelist +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_WVDB.dir/link.d "CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o" -o ../../test-bin/Test_WVDB -lkapp /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 54%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp +[ 54%] Built target Test_WVDB make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 55%] Built target sra-stat -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 55%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o +[ 54%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o -MF CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o.d -o CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-output.cpp make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/depend make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/depend -make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/depend -[ 55%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -MF CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o.d -o CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/qa-stats/input.cpp +make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o -MF CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o.d -o CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-output.cpp -Note: ngs_test_lib_load.java uses unchecked or unsafe operations. -Note: Recompile with -Xlint:unchecked for details. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 55%] Building CXX object ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-c++\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -MF CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o.d -o CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-c++/NCBI-NGS.cpp -[ 56%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -MF CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o.d -o CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-hashing.cpp -[ 56%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir/java_compiled_test-ngs-java -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -MF CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o.d -o CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-finger.cpp make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/DependInfo.cmake "--color=" +make -f test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build.make test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAssemblyStatistics.dir/link.d CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -o ../../../test-bin/testAssemblyStatistics /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 55%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -MF CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o.d -o CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-hashing.cpp make -f ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-doc-jar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/javadoc/ngs-doc && sh -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-doc.jar\ . -[ 56%] Generating CMakeFiles/test-ngs-java.dir/java_class_filelist -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/ngs-java && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_WVDB.dir/link.d "CMakeFiles/Test_WVDB.dir/test-wvdb.cpp.o" -o ../../test-bin/Test_WVDB -lkapp /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 56%] Linking CXX executable ../../../test-bin/testAssemblyStatistics -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAssemblyStatistics.dir/link.txt --verbose=1 -[ 56%] Creating Java archive test-ngs-java.jar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/test-ngs-java.jar @java_class_filelist -[ 56%] Built target Test_WVDB +make -f ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build.make ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/build +[ 55%] Building CXX object test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/test-tools/qa-stats/CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -MF CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o.d -o CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/test-finger.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 55%] Built target testAssemblyStatistics make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/DependInfo.cmake "--color=" +[ 55%] Building CXX object ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"ngs/ncbi/ngs-c++\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIC -rdynamic -MD -MT ngs/ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -MF CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o.d -o CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs-c++/NCBI-NGS.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && sh -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-src.jar\ \ ngs/ErrorMsg.java\ ngs/Statistics.java\ ngs/Fragment.java\ ngs/FragmentIterator.java\ ngs/Read.java\ ngs/ReadIterator.java\ ngs/ReadGroup.java\ ngs/ReadGroupIterator.java\ ngs/Alignment.java\ ngs/AlignmentIterator.java\ ngs/PileupEvent.java\ ngs/PileupEventIterator.java\ ngs/Pileup.java\ ngs/PileupIterator.java\ ngs/Reference.java\ ngs/ReferenceIterator.java\ ngs/ReadCollection.java\ ngs/Package.java\ ngs/itf/Refcount.java\ ngs/itf/StatisticsItf.java\ ngs/itf/FragmentItf.java\ ngs/itf/FragmentIteratorItf.java\ ngs/itf/ReadItf.java\ ngs/itf/ReadIteratorItf.java\ ngs/itf/ReadGroupItf.java\ ngs/itf/ReadGroupIteratorItf.java\ ngs/itf/AlignmentItf.java\ ngs/itf/AlignmentIteratorItf.java\ ngs/itf/PileupEventItf.java\ ngs/itf/PileupEventIteratorItf.java\ ngs/itf/PileupItf.java\ ngs/itf/PileupIteratorItf.java\ ngs/itf/ReferenceItf.java\ ngs/itf/ReferenceIteratorItf.java\ ngs/itf/ReadCollectionItf.java\ gov/nih/nlm/ncbi/ngs/DownloadManager.java\ gov/nih/nlm/ncbi/ngs/FileCreator.java\ gov/nih/nlm/ncbi/ngs/HttpManager.java\ gov/nih/nlm/ncbi/ngs/LibDependencies.java\ gov/nih/nlm/ncbi/ngs/LibManager.java\ gov/nih/nlm/ncbi/ngs/LibPathIterator.java\ gov/nih/nlm/ncbi/ngs/LibVersionChecker.java\ gov/nih/nlm/ncbi/ngs/LMProperties.java\ gov/nih/nlm/ncbi/ngs/Logger.java\ gov/nih/nlm/ncbi/ngs/Manager.java\ gov/nih/nlm/ncbi/ngs/NGS.java\ gov/nih/nlm/ncbi/ngs/Version.java\ gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java\ gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/depend +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_parse.cpp:40: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = fmt::v9::basic_string_view&]': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = fmt::v9::basic_string_view&; typename std::enable_if::type = 0]' + 1777 | return make_value(val); + | ~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {fmt::v9::basic_string_view&, const char (&)[3]}; Context = fmt::v9::basic_format_context; Args = {fmt::v9::basic_string_view, char [3]}]' + 1899 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1900 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1901 | detail::mapped_type_constant, Context>::value>( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 1902 | FMT_FORWARD(args))...} { + | ~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'OutputIt fmt::v9::format_to(OutputIt, format_string, T&& ...) [with OutputIt = appender; T = {basic_string_view&, const char (&)[3]}; typename std::enable_if::value, int>::type = 0; format_string = basic_format_string&, const char (&)[3]>]' + 1918 | return {FMT_FORWARD(args)...}; + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/format-inl.h:65:14: required from here + 65 | format_to(it, FMT_STRING("{}{}"), message, SEP); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3235:52: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const fmt::v9::basic_string_view*)(& val)))' + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build.make ngs/ngs-java/CMakeFiles/ngs-src-jar.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build.make ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java && sh -c /usr/bin/jar\ -cf\ /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-src.jar\ \ ngs/ErrorMsg.java\ ngs/Statistics.java\ ngs/Fragment.java\ ngs/FragmentIterator.java\ ngs/Read.java\ ngs/ReadIterator.java\ ngs/ReadGroup.java\ ngs/ReadGroupIterator.java\ ngs/Alignment.java\ ngs/AlignmentIterator.java\ ngs/PileupEvent.java\ ngs/PileupEventIterator.java\ ngs/Pileup.java\ ngs/PileupIterator.java\ ngs/Reference.java\ ngs/ReferenceIterator.java\ ngs/ReadCollection.java\ ngs/Package.java\ ngs/itf/Refcount.java\ ngs/itf/StatisticsItf.java\ ngs/itf/FragmentItf.java\ ngs/itf/FragmentIteratorItf.java\ ngs/itf/ReadItf.java\ ngs/itf/ReadIteratorItf.java\ ngs/itf/ReadGroupItf.java\ ngs/itf/ReadGroupIteratorItf.java\ ngs/itf/AlignmentItf.java\ ngs/itf/AlignmentIteratorItf.java\ ngs/itf/PileupEventItf.java\ ngs/itf/PileupEventIteratorItf.java\ ngs/itf/PileupItf.java\ ngs/itf/PileupIteratorItf.java\ ngs/itf/ReferenceItf.java\ ngs/itf/ReferenceIteratorItf.java\ ngs/itf/ReadCollectionItf.java\ gov/nih/nlm/ncbi/ngs/DownloadManager.java\ gov/nih/nlm/ncbi/ngs/FileCreator.java\ gov/nih/nlm/ncbi/ngs/HttpManager.java\ gov/nih/nlm/ncbi/ngs/LibDependencies.java\ gov/nih/nlm/ncbi/ngs/LibManager.java\ gov/nih/nlm/ncbi/ngs/LibPathIterator.java\ gov/nih/nlm/ncbi/ngs/LibVersionChecker.java\ gov/nih/nlm/ncbi/ngs/LMProperties.java\ gov/nih/nlm/ncbi/ngs/Logger.java\ gov/nih/nlm/ncbi/ngs/Manager.java\ gov/nih/nlm/ncbi/ngs/NGS.java\ gov/nih/nlm/ncbi/ngs/Version.java\ gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java\ gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java\ gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java\ gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = std::__cxx11::basic_string&]': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = std::__cxx11::basic_string&; typename std::enable_if::type = 0]' + 1777 | return make_value(val); + | ~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {std::__cxx11::basic_string, std::allocator >&, int&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >, int}]' + 1899 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1900 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1901 | detail::mapped_type_constant, Context>::value>( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 1902 | FMT_FORWARD(args))...} { + | ~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'std::string fmt::v9::format(format_string, T&& ...) [with T = {std::__cxx11::basic_string, std::allocator >&, int&}; std::string = std::__cxx11::basic_string; format_string = basic_format_string, std::allocator >&, int&>]' + 1918 | return {FMT_FORWARD(args)...}; + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_error.hpp:115:36: required from here + 115 | mMessage += fmt::format(" [{}:{}]", fname, line_number); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3206:44: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0, args#1)' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const std::__cxx11::basic_string*)(& val)))' + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +[ 55%] Building Java objects for ngs-examples.jar +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = const std::__cxx11::basic_string&]': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = const std::__cxx11::basic_string&; typename std::enable_if::type = 0]' + 1777 | return make_value(val); + | ~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1901:77: required from 'constexpr fmt::v9::format_arg_store::format_arg_store(T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&}; Context = fmt::v9::basic_format_context; Args = {std::__cxx11::basic_string, std::allocator >}]' + 1899 | data_{detail::make_arg< + | ~~~~~~~~~~~~~~~~~ + 1900 | is_packed, Context, + | ~~~~~~~~~~~~~~~~~~~ + 1901 | detail::mapped_type_constant, Context>::value>( + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ + 1902 | FMT_FORWARD(args))...} { + | ~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1918:31: required from 'std::string fmt::v9::format(format_string, T&& ...) [with T = {const std::__cxx11::basic_string, std::allocator >&}; std::string = std::__cxx11::basic_string; format_string = basic_format_string, std::allocator >&>]' + 1918 | return {FMT_FORWARD(args)...}; + | ^ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sharq/fastq_error.hpp:131:30: required from here + 131 | os << fmt::format("{:<70}", std::get<1>(it.second)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:3206:44: in 'constexpr' expansion of 'fmt::v9::make_format_args<>(args#0)' +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:15: warning: possibly dangling reference to a temporary [-Wdangling-reference] + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((* & val))' + 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_sources make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/depend -[ 56%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-alias make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-alias.dir/link.txt --verbose=1 -[ 56%] Building Java objects for ngs-examples.jar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClearClassFiles.cmake --log-level STATUS make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/CMakeFiles/gw-dumper.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build.make libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/javac -classpath :/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib:/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-java.jar -d /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir @/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_sources make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/general-writer/CMakeFiles/gw-dumper.dir/build.make libs/general-writer/CMakeFiles/gw-dumper.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 56%] Building CXX object libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o +[ 55%] Building CXX object libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -MF CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o.d -o CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_makedb.cpp -[ 56%] Building CXX object libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o +[ 55%] Building CXX object libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/general-writer/CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -MF CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o.d -o CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/gw-dumper.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/general-writer/test/CMakeFiles/test-general-writer.dir/build.make libs/general-writer/test/CMakeFiles/test-general-writer.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=test-ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test/CMakeFiles/test-general-writer.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-alias.dir/link.d "CMakeFiles/Test_Vdb_dump_view-alias.dir/test-view-alias.cpp.o" -o ../../../test-bin/Test_Vdb_dump_view-alias /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testAssemblyStatistics.dir/link.d CMakeFiles/testAssemblyStatistics.dir/testAssemblyStatistics.cpp.o -o ../../../test-bin/testAssemblyStatistics /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 55%] Built target ngs-src-jar make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/general-writer/test/CMakeFiles/test-general-writer.dir/build.make libs/general-writer/test/CMakeFiles/test-general-writer.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 56%] Built target ngs-doc-jar -[ 56%] Built target testAssemblyStatistics make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/depend -make -f tools/loaders/bam-loader/CMakeFiles/samview.dir/build.make tools/loaders/bam-loader/CMakeFiles/samview.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/bam-load.dir/DependInfo.cmake "--color=" -[ 56%] Building CXX object libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -[ 56%] Built target Test_Vdb_dump_view-alias +[ 55%] Building CXX object libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/general-writer/test/CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -MF CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o.d -o CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp -make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/samview.dir/DependInfo.cmake "--color=" +[ 55%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o -MF CMakeFiles/bam-load.dir/bam-loader.c.o.d -o CMakeFiles/bam-load.dir/bam-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam-loader.c +[ 55%] Built target test-ngs-java +make -f tools/loaders/bam-loader/CMakeFiles/samview.dir/build.make tools/loaders/bam-loader/CMakeFiles/samview.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar/CMakeFiles/kar.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader/CMakeFiles/samview.dir/DependInfo.cmake "--color=" +[ 55%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P CMakeFiles/ncbi-ngs-c++.dir/cmake_clean_target.cmake make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/bam-loader/CMakeFiles/samview.dir/build.make tools/loaders/bam-loader/CMakeFiles/samview.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 56%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o -MF CMakeFiles/samview.dir/bam.c.o.d -o CMakeFiles/samview.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-c++.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build.make tools/loaders/bam-loader/CMakeFiles/bam-load.dir/build +[ 56%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -MF CMakeFiles/samview.dir/sam.c.o.d -o CMakeFiles/samview.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c +[ 56%] Built target ngs-doc-jar +[ 56%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o -MF CMakeFiles/samview.dir/samview.c.o.d -o CMakeFiles/samview.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/samview.c +/usr/bin/ar qc ../../../lib/libncbi-ngs-c++.a "CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" +/usr/bin/ranlib ../../../lib/libncbi-ngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && rm -f libncbi-ngs-c++.a.3.2.1 +[ 56%] Linking CXX executable ../../../test-bin/Test_VdbValidate_Unit +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VdbValidate_Unit.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-ngs-c++.a libncbi-ngs-c++.a.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3.2.1 libncbi-ngs-c++.a.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3 libncbi-ngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 56%] Linking CXX executable ../../../test-bin/Test_KFile_Stream +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/libs/kfile_stream && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFile_Stream.dir/link.txt --verbose=1 +[ 56%] Built target ncbi-ngs-c++ +make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/bam.c.o -MF CMakeFiles/samview.dir/bam.c.o.d -o CMakeFiles/samview.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar/CMakeFiles/kar.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/kar/CMakeFiles/kar.dir/build.make tools/loaders/kar/CMakeFiles/kar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam-loader.c.o -MF CMakeFiles/bam-load.dir/bam-loader.c.o.d -o CMakeFiles/bam-load.dir/bam-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam-loader.c -[ 57%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-path.c.o +[ 56%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-path.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar-path.c.o -MF CMakeFiles/kar.dir/kar-path.c.o.d -o CMakeFiles/kar.dir/kar-path.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar-path.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_VdbValidate_Unit.dir/link.d "CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o" -o ../../../test-bin/Test_VdbValidate_Unit /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Built target ngs-src-jar -[ 57%] Linking CXX static library ../../../lib/libncbi-ngs-c++.a -[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o -MF CMakeFiles/bam-load.dir/bam.c.o.d -o CMakeFiles/bam-load.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -P CMakeFiles/ncbi-ngs-c++.dir/cmake_clean_target.cmake -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ncbi/ngs-c++ && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-c++.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/ngs-java/CMakeFiles/test-ngs-java.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=test-ngs-java.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Linking CXX executable ../../../test-bin/Test_KFile_Stream -[ 57%] Built target test-ngs-java -/usr/bin/ar qc ../../../lib/libncbi-ngs-c++.a "CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" -/usr/bin/ranlib ../../../lib/libncbi-ngs-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/libs/kfile_stream && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFile_Stream.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && rm -f libncbi-ngs-c++.a.3.2.1 +[ 56%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o -MF CMakeFiles/kar.dir/kar-args.c.o.d -o CMakeFiles/kar.dir/kar-args.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar-args.c +[ 56%] Linking CXX executable ../../../test-bin/Test_Drivertool_ToolArgs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_ToolArgs.dir/link.txt --verbose=1 +[ 56%] Built target Test_VdbValidate_Unit make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-ngs-c++.a libncbi-ngs-c++.a.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/kar/CMakeFiles/kar+.dir/build.make tools/loaders/kar/CMakeFiles/kar+.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o +[ 56%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar-path.c.o -MF CMakeFiles/kar+.dir/kar-path.c.o.d -o CMakeFiles/kar+.dir/kar-path.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar-path.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3.2.1 libncbi-ngs-c++.a.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a.3 libncbi-ngs-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Built target ncbi-ngs-c++ -[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o -[ 57%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o -MF CMakeFiles/bam-load.dir/sam.c.o.d -o CMakeFiles/bam-load.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar-args.c.o -MF CMakeFiles/kar.dir/kar-args.c.o.d -o CMakeFiles/kar.dir/kar-args.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar-args.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KFile_Stream.dir/link.d CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -o ../../../test-bin/Test_KFile_Stream /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 57%] Linking CXX executable ../../../test-bin/Test_KFF +[ 56%] Linking CXX executable ../../../test-bin/Test_KFF cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/copycat && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_KFF.dir/link.txt --verbose=1 -[ 57%] Built target Test_KFile_Stream -[ 57%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o -MF CMakeFiles/kar.dir/kar.c.o.d -o CMakeFiles/kar.dir/kar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar.c -/usr/bin/c++ -Wall -g -O2 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object tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -MF CMakeFiles/kar+.dir/kar+args.c.o.d -o CMakeFiles/kar+.dir/kar+args.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+args.c -[ 57%] Built target Test_KFF -[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o -MF CMakeFiles/bam-load.dir/reference-writer.c.o.d -o CMakeFiles/bam-load.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/reference-writer.c -[ 57%] Linking CXX executable ../../../test-bin/Test_Drivertool_ToolArgs -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_ToolArgs.dir/link.txt --verbose=1 -[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -MF CMakeFiles/bam-load.dir/sequence-writer.c.o.d -o CMakeFiles/bam-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sequence-writer.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -E touch /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir/java_compiled_ngs-examples -[ 57%] Generating CMakeFiles/ngs-examples.dir/java_class_filelist +[ 56%] Generating CMakeFiles/ngs-examples.dir/java_class_filelist cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-java/examples && /usr/bin/cmake -DCMAKE_JAVA_CLASS_OUTPUT_PATH=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir -DCMAKE_JAR_CLASSES_PREFIX= -P /usr/share/cmake-3.31/Modules/UseJava/ClassFilelist.cmake -[ 58%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o -MF CMakeFiles/bam-load.dir/loader-imp.c.o.d -o CMakeFiles/bam-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c -[ 58%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -MF CMakeFiles/kar+.dir/kar+print.c.o.d -o CMakeFiles/kar+.dir/kar+print.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+print.c -[ 58%] Creating Java archive ngs-examples.jar +[ 56%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/bam.c.o -MF CMakeFiles/bam-load.dir/bam.c.o.d -o CMakeFiles/bam-load.dir/bam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KFile_Stream.dir/link.d CMakeFiles/Test_KFile_Stream.dir/custom_stream.cpp.o -o ../../../test-bin/Test_KFile_Stream /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 56%] Built target Test_KFile_Stream +[ 56%] Creating Java archive ngs-examples.jar cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/jar -cf /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/ngs-examples.jar @java_class_filelist -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] - 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here - 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] - 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here - 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, - | ^~~~~~~~~~~~~~~~~ -[ 58%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/sam.c.o -MF CMakeFiles/samview.dir/sam.c.o.d -o CMakeFiles/samview.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c -[ 58%] Linking CXX executable ../../../test-bin/Test_VdbValidate_Unit -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp: In function 'void ncbi::runTest(int, const char**, const char*, const char*)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp:295:20: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] - 295 | delete gw; - | ^~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp:232:24: note: 'gw' was declared here - 232 | GeneralWriter *gw; - | ^~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-validate && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VdbValidate_Unit.dir/link.txt --verbose=1 +[ 56%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+args.c.o -MF CMakeFiles/kar+.dir/kar+args.c.o.d -o CMakeFiles/kar+.dir/kar+args.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+args.c /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_ToolArgs.dir/link.d "CMakeFiles/Test_Drivertool_ToolArgs.dir/test-tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_ToolArgs.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" -o ../../../test-bin/Test_Drivertool_ToolArgs /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Built target Test_Drivertool_ToolArgs -[ 58%] Building C object tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/samview.dir/samview.c.o -MF CMakeFiles/samview.dir/samview.c.o.d -o CMakeFiles/samview.dir/samview.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/samview.c -[ 58%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -MF CMakeFiles/bam-load.dir/mem-bank.cpp.o.d -o CMakeFiles/bam-load.dir/mem-bank.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/mem-bank.cpp -[ 58%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o -MF CMakeFiles/bam-load.dir/low-match-count.cpp.o.d -o CMakeFiles/bam-load.dir/low-match-count.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/low-match-count.cpp -[ 58%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -MF CMakeFiles/kar+.dir/kar+util.c.o.d -o CMakeFiles/kar+.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_VdbValidate_Unit.dir/link.d "CMakeFiles/Test_VdbValidate_Unit.dir/test-vdb-validate.cpp.o" -o ../../../test-bin/Test_VdbValidate_Unit /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 56%] Building C object tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o +[ 56%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+print.c.o -MF CMakeFiles/kar+.dir/kar+print.c.o.d -o CMakeFiles/kar+.dir/kar+print.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+print.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar.dir/kar.c.o -MF CMakeFiles/kar.dir/kar.c.o.d -o CMakeFiles/kar.dir/kar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_KFF.dir/link.d CMakeFiles/Test_KFF.dir/kfftest.cpp.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffext.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffkey.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/fileformat.c.o CMakeFiles/Test_KFF.dir/__/__/__/tools/internal/copycat/kff/ffmagic.c.o -o ../../../test-bin/Test_KFF /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmagic make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Linking CXX executable ../../../bin/sratools -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/sratools.dir/link.txt --verbose=1 +[ 56%] Built target Test_Drivertool_ToolArgs make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar/CMakeFiles/kar+meta.dir/DependInfo.cmake "--color=" -[ 58%] Built target Test_VdbValidate_Unit +[ 56%] Built target Test_KFF make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/DependInfo.cmake "--color=" +[ 56%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+util.c.o -MF CMakeFiles/kar+.dir/kar+util.c.o.d -o CMakeFiles/kar+.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/kar/CMakeFiles/kar+meta.dir/build.make tools/loaders/kar/CMakeFiles/kar+meta.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Linking CXX executable ../../../test-bin/ngs-makedb -[ 58%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-makedb.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o -MF CMakeFiles/kar+meta.dir/kar+util.c.o.d -o CMakeFiles/kar+meta.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build.make tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Linking CXX executable ../../../bin/kar -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar.dir/link.txt --verbose=1 -[ 58%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o +[ 57%] Linking CXX executable ../../../test-bin/Test_LOADER +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADER.dir/link.txt --verbose=1 +[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -MF CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o.d -o CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dump-blob-boundaries.c +[ 57%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+util.c.o -MF CMakeFiles/kar+meta.dir/kar+util.c.o.d -o CMakeFiles/kar+meta.dir/kar+util.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+util.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] + 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here + 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, + | ^~~~~~~~~~~~~~~~~ +[ 57%] Linking CXX executable ../../../test-bin/ngs-makedb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-makedb.dir/link.txt --verbose=1 +[ 57%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o -MF CMakeFiles/kar+meta.dir/kar+meta.c.o.d -o CMakeFiles/kar+meta.dir/kar+meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+meta.c +[ 57%] Building C object tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+.dir/kar+.c.o -MF CMakeFiles/kar+.dir/kar+.c.o.d -o CMakeFiles/kar+.dir/kar+.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+.c +[ 57%] Linking CXX executable ../../../bin/dump-blob-boundaries +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-blob-boundaries.dir/link.txt --verbose=1 +[ 57%] Linking CXX executable ../../../test-bin/test-regexpr +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-regexpr.dir/link.txt --verbose=1 +[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sam.c.o -MF CMakeFiles/bam-load.dir/sam.c.o.d -o CMakeFiles/bam-load.dir/sam.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sam.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_LOADER.dir/link.d CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -o ../../../test-bin/Test_LOADER ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-examples.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake +[ 57%] Built target Test_LOADER make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Building C object tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -MF CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o.d -o CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dump-blob-boundaries.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-java/examples/CMakeFiles/ngs-examples.dir && /usr/bin/cmake -D_JAVA_TARGET_DIR=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib -D_JAVA_TARGET_OUTPUT_NAME=ngs-examples.jar -D_JAVA_TARGET_OUTPUT_LINK= -P /usr/share/cmake-3.31/Modules/UseJava/Symlinks.cmake +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dump-blob-boundaries.dir/link.d "CMakeFiles/dump-blob-boundaries.dir/dump-blob-boundaries.c.o" -o ../../../bin/dump-blob-boundaries /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f dump-blob-boundaries.3.2.1 +[ 57%] Built target ngs-examples +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv dump-blob-boundaries dump-blob-boundaries.3.2.1 make -f tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/build +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ngs-makedb.dir/link.d "CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o" -o ../../../test-bin/ngs-makedb -Wl,-Bstatic -lktst -lkapp -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp: In function 'void ncbi::runTest(int, const char**, const char*, const char*)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp:295:20: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] + 295 | delete gw; + | ^~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test/test-general-writer.cpp:232:24: note: 'gw' was declared here + 232 | GeneralWriter *gw; + | ^~ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 58%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -MF CMakeFiles/sra-sort.dir/caps.c.o.d -o CMakeFiles/sra-sort.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/caps.c -[ 58%] Linking CXX executable ../../../test-bin/test-general-writer -[ 58%] Built target ngs-examples make -f tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-writer.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3.2.1 dump-blob-boundaries.3 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 59%] Linking CXX executable ../../../test-bin/Test_LOADER -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADER.dir/link.txt --verbose=1 -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -MF CMakeFiles/sra-sort-cg.dir/caps.c.o.d -o CMakeFiles/sra-sort-cg.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/caps.c -[ 59%] Linking CXX executable ../../../test-bin/Test_LOADERFILE -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADERFILE.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar.dir/link.d "CMakeFiles/kar.dir/kar-path.c.o" "CMakeFiles/kar.dir/kar-args.c.o" CMakeFiles/kar.dir/kar.c.o -o ../../../bin/kar /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kar kar.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar.3.2.1 kar.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar.3 kar -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/DependInfo.cmake "--color=" +[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3 dump-blob-boundaries +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/caps.c.o -MF CMakeFiles/sra-sort.dir/caps.c.o.d -o CMakeFiles/sra-sort.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/caps.c make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/depend -[ 59%] Built target kar make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sratools.dir/link.d CMakeFiles/sratools.dir/sratools.cpp.o CMakeFiles/sratools.dir/config.cpp.o "CMakeFiles/sratools.dir/command-line.cpp.o" "CMakeFiles/sratools.dir/run-source.cpp.o" CMakeFiles/sratools.dir/proc.cpp.o CMakeFiles/sratools.dir/uuid.cpp.o CMakeFiles/sratools.dir/accession.cpp.o CMakeFiles/sratools.dir/service.cpp.o "CMakeFiles/sratools.dir/json-parse.cpp.o" "CMakeFiles/sratools.dir/SDL-response.cpp.o" "CMakeFiles/sratools.dir/tool-args.cpp.o" "CMakeFiles/sratools.dir/build-version.cpp.o" "CMakeFiles/sratools.dir/file-path.posix.cpp.o" CMakeFiles/sratools.dir/proc.posix.cpp.o -o ../../../bin/sratools /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sratools.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sratools sratools.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 sratools.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3 sratools -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 59%] Building C object tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o -[ 59%] Linking CXX executable ../../../bin/dump-blob-boundaries -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ngs-makedb.dir/link.d "CMakeFiles/ngs-makedb.dir/ngstest_makedb.cpp.o" -o ../../../test-bin/ngs-makedb -Wl,-Bstatic -lktst -lkapp -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-blob-boundaries.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -MF CMakeFiles/sra-sort.dir/mem.c.o.d -o CMakeFiles/sra-sort.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c +[ 57%] Built target ngs-makedb +make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/kar\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/kar/CMakeFiles/kar+meta.dir/kar+meta.c.o -MF CMakeFiles/kar+meta.dir/kar+meta.c.o.d -o CMakeFiles/kar+meta.dir/kar+meta.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/kar/kar+meta.c -[ 59%] Built target ngs-makedb -[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -MF CMakeFiles/sra-sort-cg.dir/mem.c.o.d -o CMakeFiles/sra-sort-cg.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c -[ 59%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o -MF CMakeFiles/latf-load.dir/spot-assembler.c.o.d -o CMakeFiles/latf-load.dir/spot-assembler.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/spot-assembler.c -[ 59%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o -MF CMakeFiles/latf-load.dir/common-writer.c.o.d -o CMakeFiles/latf-load.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c -[ 59%] Built target sratools -[ 59%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-general-writer.dir/link.d "CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o" -o ../../../test-bin/test-general-writer ../../../ilib/libgeneral-writer.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -MF CMakeFiles/latf-load.dir/sequence-writer.c.o.d -o CMakeFiles/latf-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/sff-load.dir/DependInfo.cmake "--color=" +[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mem.c.o -MF CMakeFiles/sra-sort.dir/mem.c.o.d -o CMakeFiles/sra-sort.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 59%] Built target test-general-writer -[ 60%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o -[ 60%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o -MF CMakeFiles/latf-load.dir/common-reader.c.o.d -o CMakeFiles/latf-load.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-reader.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -MF CMakeFiles/latf-load.dir/fastq-reader.c.o.d -o CMakeFiles/latf-load.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_LOADERFILE.dir/link.d "CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o" -o ../../../test-bin/Test_LOADERFILE ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 60%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o -MF CMakeFiles/sra-sort-cg.dir/membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/membank.c -[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -[ 60%] Built target Test_LOADERFILE -[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f dump-blob-boundaries.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv dump-blob-boundaries dump-blob-boundaries.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3.2.1 dump-blob-boundaries.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-blob-boundaries.3 dump-blob-boundaries -[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c +make -f tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build.make tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 61%] Linking CXX executable ../../../test-bin/test-regexpr -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-regexpr.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_LOADER.dir/link.d CMakeFiles/Test_LOADER.dir/loadertest.cpp.o -o ../../../test-bin/Test_LOADER ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 61%] Built target dump-blob-boundaries -[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o -MF 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o -MF CMakeFiles/latf-load.dir/id2name.c.o.d -o CMakeFiles/latf-load.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/id2name.c -[ 61%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-lex.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c -[ 61%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -MF CMakeFiles/latf-load.dir/fastq-loader.c.o.d -o CMakeFiles/latf-load.dir/fastq-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-loader.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/sff-load.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build.make tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/build make -f tools/loaders/sra-load/CMakeFiles/sff-load.dir/build.make tools/loaders/sra-load/CMakeFiles/sff-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 61%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/pstring.c.o -MF CMakeFiles/sff-load.dir/pstring.c.o.d -o CMakeFiles/sff-load.dir/pstring.c.o -c 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tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/caps.c.o -MF CMakeFiles/sra-sort-cg.dir/caps.c.o.d -o CMakeFiles/sra-sort-cg.dir/caps.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/caps.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/fastq-load.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_LOADERFILE.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-regexpr.dir/link.d "CMakeFiles/test-regexpr.dir/test-regexpr.cpp.o" -o ../../../test-bin/test-regexpr /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lre2 -labsl_string_view make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o -[ 62%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD 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-D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o -MF CMakeFiles/sra-sort-cg.dir/except.c.o.d -o CMakeFiles/sra-sort-cg.dir/except.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/except.c -[ 62%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/except.c.o -[ 62%] Linking CXX executable ../../../bin/samview -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux 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-D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/idx-mapping.c -[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o +[ 57%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/spot-assembler.c.o -MF 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/common-xml.c.o -MF CMakeFiles/sff-load.dir/common-xml.c.o.d -o CMakeFiles/sff-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c: In function 'WriteLoaderSignature': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c:180:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 180 | rc = KLoaderMeta_Write(node, progName, __DATE__, "FASTQ", KAppVersion()); - | ^~~~~~~~ -[ 62%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o -MF CMakeFiles/sra-sort-cg.dir/map-file.c.o.d -o CMakeFiles/sra-sort-cg.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c -[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o +[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o +[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/alignment-writer.c.o -MF CMakeFiles/bam-load.dir/alignment-writer.c.o.d -o CMakeFiles/bam-load.dir/alignment-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/alignment-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o -MF CMakeFiles/fastq-load.dir/pstring.c.o.d -o CMakeFiles/fastq-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/membank.c.o +[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-membank.c.o -MF CMakeFiles/sra-sort.dir/paged-membank.c.o.d -o CMakeFiles/sra-sort.dir/paged-membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-membank.c +[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mem.c.o -MF CMakeFiles/sra-sort-cg.dir/mem.c.o.d -o CMakeFiles/sra-sort-cg.dir/mem.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mem.c +[ 57%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/membank.c.o -MF CMakeFiles/sra-sort-cg.dir/membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/membank.c +[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/reference-writer.c.o -MF CMakeFiles/bam-load.dir/reference-writer.c.o.d -o CMakeFiles/bam-load.dir/reference-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/reference-writer.c +[ 57%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/experiment-xml.c.o -MF CMakeFiles/sff-load.dir/experiment-xml.c.o.d -o CMakeFiles/sff-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -MF CMakeFiles/sff-load.dir/run-xml.c.o.d -o CMakeFiles/sff-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 62%] Linking CXX executable ../../../bin/kar+meta -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+meta.dir/link.txt --verbose=1 -[ 62%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c -make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_LOADERFILE.dir/link.d "CMakeFiles/Test_LOADERFILE.dir/test-loaderfile.cpp.o" -o ../../../test-bin/Test_LOADERFILE ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 57%] Building C object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/sequence-writer.c.o -MF CMakeFiles/bam-load.dir/sequence-writer.c.o.d -o CMakeFiles/bam-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/sequence-writer.c +[ 58%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c +[ 58%] Built target Test_LOADERFILE +[ 58%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/except.c.o make -f tools/loaders/sra-load/CMakeFiles/srf-load.dir/build.make tools/loaders/sra-load/CMakeFiles/srf-load.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/fastq-load.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/except.c.o -MF CMakeFiles/sra-sort.dir/except.c.o.d -o CMakeFiles/sra-sort.dir/except.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/except.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/srf-load.dir/DependInfo.cmake "--color=" +[ 58%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o -MF CMakeFiles/fastq-load.dir/common-xml.c.o.d -o CMakeFiles/fastq-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 58%] Linking CXX executable ../../../test-bin/test-general-writer +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-writer.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/srf-load.dir/build.make tools/loaders/sra-load/CMakeFiles/srf-load.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build.make tools/loaders/sra-load/CMakeFiles/fastq-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o -[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/pstring.c.o -MF CMakeFiles/fastq-load.dir/pstring.c.o.d -o CMakeFiles/fastq-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:3599:44: warning: "/*" within comment [-Wcomment] - 3599 | int const logLevel = klogWarn; /*G.assembleWithSecondary ? klogWarn : klogErr; +[ 58%] Linking CXX executable ../../../bin/kar+meta +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+meta.dir/link.txt --verbose=1 +[ 58%] Linking CXX executable ../../../bin/kar +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar.dir/link.txt --verbose=1 +[ 58%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o +[ 59%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/pstring.c.o -MF CMakeFiles/srf-load.dir/pstring.c.o.d -o CMakeFiles/srf-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:4332:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 4332 | rc = KLoaderMeta_Write(node, progName, __DATE__, "BAM", KAppVersion()); - | ^~~~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-membank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-membank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-membank.c +[ 59%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o -MF CMakeFiles/srf-load.dir/common-xml.c.o.d -o CMakeFiles/srf-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 59%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-writer.c.o -MF CMakeFiles/latf-load.dir/common-writer.c.o.d -o CMakeFiles/latf-load.dir/common-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-writer.c +[ 59%] Linking CXX executable ../../../bin/sra-info +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-info.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-general-writer.dir/link.d "CMakeFiles/test-general-writer.dir/test-general-writer.cpp.o" -o ../../../test-bin/test-general-writer ../../../ilib/libgeneral-writer.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 59%] Built target test-general-writer make -f tools/loaders/sra-load/CMakeFiles/abi-load.dir/build.make tools/loaders/sra-load/CMakeFiles/abi-load.dir/depend -[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o -MF CMakeFiles/sff-load.dir/loader-file.c.o.d -o CMakeFiles/sff-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/abi-load.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samview.dir/link.d CMakeFiles/samview.dir/bam.c.o CMakeFiles/samview.dir/sam.c.o CMakeFiles/samview.dir/samview.c.o -o ../../../bin/samview /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lz -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f samview.3.2.1 -[ 62%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o -MF CMakeFiles/sra-sort.dir/map-file.c.o.d -o CMakeFiles/sra-sort.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv samview samview.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview.3.2.1 samview.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview.3 samview +[ 60%] Linking CXX executable ../../../bin/kar+ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/kar && /usr/bin/cmake -E cmake_link_script CMakeFiles/kar+.dir/link.txt --verbose=1 +[ 60%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/idx-mapping.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/abi-load.dir/build.make tools/loaders/sra-load/CMakeFiles/abi-load.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o +[ 60%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o +[ 60%] Linking CXX executable ../../../bin/samview +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/samview.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -MF CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o.d -o CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/paged-mmapbank.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar.dir/link.d "CMakeFiles/kar.dir/kar-path.c.o" "CMakeFiles/kar.dir/kar-args.c.o" CMakeFiles/kar.dir/kar.c.o -o ../../../bin/kar /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kar kar.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar.3.2.1 kar.3 +[ 60%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/pstring.c.o -MF CMakeFiles/abi-load.dir/pstring.c.o.d -o CMakeFiles/abi-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c -[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -[ 63%] Built target samview -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -MF CMakeFiles/sff-load.dir/loader-fmt.c.o.d -o CMakeFiles/sff-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/common-xml.c.o -MF CMakeFiles/srf-load.dir/common-xml.c.o.d -o CMakeFiles/srf-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/common-xml.c.o -MF CMakeFiles/fastq-load.dir/common-xml.c.o.d -o CMakeFiles/fastq-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o -MF CMakeFiles/fastq-load.dir/experiment-xml.c.o.d -o CMakeFiles/fastq-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar.3 kar +[ 61%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar+meta.dir/link.d CMakeFiles/kar+meta.dir/kar+util.c.o CMakeFiles/kar+meta.dir/kar+meta.c.o -o ../../../bin/kar+meta /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/loader-imp.c.o -MF CMakeFiles/bam-load.dir/loader-imp.c.o.d -o CMakeFiles/bam-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar+meta.3.2.1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kar+meta kar+meta.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+meta.3.2.1 kar+meta.3 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c: In function 'BAM_FileMakeAlignment': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1777:14: warning: '' may be used uninitialized [-Wmaybe-uninitialized] + 1777 | if (!BAM_AlignmentInit(y, rsltsize, datasize, &y->extra[numExtra])) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/bam.c:1697:13: note: by argument 4 of type 'const void * const' to 'BAM_AlignmentInit' declared here + 1697 | static bool BAM_AlignmentInit(BAM_Alignment *const self, unsigned const maxsize, + | ^~~~~~~~~~~~~~~~~ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+meta.3 kar+meta make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 64%] Linking CXX executable ../../../bin/kar+ -[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -MF CMakeFiles/abi-load.dir/common-xml.c.o.d -o CMakeFiles/abi-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -cd 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o -MF CMakeFiles/fastq-load.dir/loader-file.c.o.d -o CMakeFiles/fastq-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -MF CMakeFiles/fastq-load.dir/loader-fmt.c.o.d -o CMakeFiles/fastq-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o -MF CMakeFiles/fastq-load.dir/sra-writer.c.o.d -o CMakeFiles/fastq-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/experiment-xml.c.o -[ 64%] Linking CXX executable ../../../bin/latf-load -cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/latf-load.dir/link.txt --verbose=1 -[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -MF CMakeFiles/fastq-load.dir/loader.c.o.d -o CMakeFiles/fastq-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar+.dir/link.d "CMakeFiles/kar+.dir/kar-path.c.o" CMakeFiles/kar+.dir/kar+args.c.o CMakeFiles/kar+.dir/kar+print.c.o CMakeFiles/kar+.dir/kar+util.c.o CMakeFiles/kar+.dir/kar+.c.o -o ../../../bin/kar+ /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar+.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kar+ kar+.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+.3.2.1 kar+.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+.3 kar+ -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 64%] Built target kar+ +[ 61%] Built target kar make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/depend -[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/illumina-load.dir/DependInfo.cmake "--color=" +[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o +[ 61%] Built target kar+meta cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/experiment-xml.c.o -MF CMakeFiles/srf-load.dir/experiment-xml.c.o.d -o CMakeFiles/srf-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o -MF CMakeFiles/illumina-load.dir/pstring.c.o.d -o CMakeFiles/illumina-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux 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-D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o -MF CMakeFiles/illumina-load.dir/experiment-xml.c.o.d -o CMakeFiles/illumina-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/latf-load.dir/link.d "CMakeFiles/latf-load.dir/spot-assembler.c.o" "CMakeFiles/latf-load.dir/common-writer.c.o" "CMakeFiles/latf-load.dir/sequence-writer.c.o" "CMakeFiles/latf-load.dir/common-reader.c.o" "CMakeFiles/latf-load.dir/fastq-reader.c.o" "CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o" "CMakeFiles/latf-load.dir/zz_fastq-lex.c.o" "CMakeFiles/latf-load.dir/id2name.c.o" "CMakeFiles/latf-load.dir/fastq-loader.c.o" "CMakeFiles/latf-load.dir/loader-imp.c.o" -o ../../../bin/latf-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f latf-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv latf-load latf-load.3.2.1 -[ 65%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s latf-load.3.2.1 latf-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/row-set.c -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o -MF CMakeFiles/illumina-load.dir/run-xml.c.o.d -o CMakeFiles/illumina-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s latf-load.3 latf-load -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o -MF CMakeFiles/illumina-load.dir/loader-file.c.o.d -o CMakeFiles/illumina-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -MF CMakeFiles/sff-load.dir/sra-writer.c.o.d -o CMakeFiles/sff-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -MF CMakeFiles/illumina-load.dir/loader-fmt.c.o.d -o CMakeFiles/illumina-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 65%] Linking CXX executable ../../../test-bin/Test_Align_samextract -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Align_samextract.dir/link.txt --verbose=1 -[ 65%] Built target latf-load -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -MF CMakeFiles/srf-load.dir/run-xml.c.o.d -o CMakeFiles/srf-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -[ 65%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -MF CMakeFiles/srf-load.dir/loader-file.c.o.d -o CMakeFiles/srf-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o -MF CMakeFiles/sff-load.dir/loader.c.o.d -o CMakeFiles/sff-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/helicos-load.dir/DependInfo.cmake "--color=" -[ 65%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o -MF CMakeFiles/sra-sort.dir/col-pair.c.o.d -o CMakeFiles/sra-sort.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build.make tools/loaders/sra-load/CMakeFiles/illumina-load.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 61%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build.make tools/loaders/sra-load/CMakeFiles/helicos-load.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/bam-loader/CMakeFiles/bam-load.dir/mem-bank.cpp.o -MF CMakeFiles/bam-load.dir/mem-bank.cpp.o.d -o CMakeFiles/bam-load.dir/mem-bank.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/mem-bank.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -[ 65%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -MF CMakeFiles/sra-sort.dir/row-set.c.o.d -o CMakeFiles/sra-sort.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/row-set.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -MF CMakeFiles/illumina-load.dir/sra-writer.c.o.d -o CMakeFiles/illumina-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/pstring.c.o -MF CMakeFiles/illumina-load.dir/pstring.c.o.d -o CMakeFiles/illumina-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c +[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/pstring.c.o -MF CMakeFiles/helicos-load.dir/pstring.c.o.d -o CMakeFiles/helicos-load.dir/pstring.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pstring.c -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -MF CMakeFiles/helicos-load.dir/common-xml.c.o.d -o CMakeFiles/helicos-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c -[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o -MF CMakeFiles/illumina-load.dir/loader.c.o.d -o CMakeFiles/illumina-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Align_samextract.dir/link.d "CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o" -o ../../../test-bin/Test_Align_samextract -lsam-extract /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/run-xml.c.o -MF CMakeFiles/sff-load.dir/run-xml.c.o.d -o CMakeFiles/sff-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/kar+.dir/link.d "CMakeFiles/kar+.dir/kar-path.c.o" CMakeFiles/kar+.dir/kar+args.c.o CMakeFiles/kar+.dir/kar+print.c.o CMakeFiles/kar+.dir/kar+util.c.o CMakeFiles/kar+.dir/kar+.c.o -o ../../../bin/kar+ /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f kar+.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv kar+ kar+.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+.3.2.1 kar+.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s kar+.3 kar+ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 65%] Built target Test_Align_samextract -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o -[ 66%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o -MF CMakeFiles/helicos-load.dir/experiment-xml.c.o.d -o CMakeFiles/helicos-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c -[ 66%] Linking CXX executable ../../../bin/sra-info -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-info.dir/link.txt --verbose=1 -[ 66%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c -[ 66%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c -[ 66%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c -[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-info.dir/link.d "CMakeFiles/sra-info.dir/main.cpp.o" "CMakeFiles/sra-info.dir/sra-info.cpp.o" "CMakeFiles/sra-info.dir/formatter.cpp.o" -o ../../../bin/sra-info /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-info.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-info sra-info.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samview.dir/link.d CMakeFiles/samview.dir/bam.c.o CMakeFiles/samview.dir/sam.c.o CMakeFiles/samview.dir/samview.c.o -o ../../../bin/samview /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lz +[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o +[ 61%] Built target kar+ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f samview.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/except.c.o -MF CMakeFiles/sra-sort-cg.dir/except.c.o.d -o CMakeFiles/sra-sort-cg.dir/except.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/except.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-info.3.2.1 sra-info.3 make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o -MF CMakeFiles/fastq-load.dir/writer-illumina.c.o.d -o CMakeFiles/fastq-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv samview samview.3.2.1 +[ 61%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/map-file.c.o -MF CMakeFiles/sra-sort.dir/map-file.c.o.d -o CMakeFiles/sra-sort.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c +[ 61%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/common-xml.c.o -MF CMakeFiles/abi-load.dir/common-xml.c.o.d -o CMakeFiles/abi-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-info.3 sra-info +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview.3.2.1 samview.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s samview.3 samview +[ 61%] Building CXX object tools/loaders/bam-loader/CMakeFiles/bam-load.dir/low-match-count.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/bam-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/bam-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/DependInfo.cmake "--color=" -[ 67%] Linking CXX executable ../../../test-bin/Test_qa-stats_Fingerprint -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Fingerprint.dir/link.txt --verbose=1 -[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -MF CMakeFiles/helicos-load.dir/run-xml.c.o.d -o 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -MF CMakeFiles/fastq-load.dir/writer-454.c.o.d -o CMakeFiles/fastq-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build.make tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5arrayfile.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o -MF CMakeFiles/sff-load.dir/writer-454.c.o.d -o CMakeFiles/sff-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c -[ 68%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pstring.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -MF CMakeFiles/srf-load.dir/loader-fmt.c.o.d -o CMakeFiles/srf-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -[ 69%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -MF CMakeFiles/abi-load.dir/loader-fmt.c.o.d -o CMakeFiles/abi-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-info.dir/link.d "CMakeFiles/sra-info.dir/main.cpp.o" "CMakeFiles/sra-info.dir/sra-info.cpp.o" "CMakeFiles/sra-info.dir/formatter.cpp.o" -o ../../../bin/sra-info /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-info.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-info sra-info.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-info.3.2.1 sra-info.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-info.3 sra-info -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time 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-D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -MF CMakeFiles/abi-load.dir/sra-writer.c.o.d -o CMakeFiles/abi-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc 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object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -MF CMakeFiles/illumina-load.dir/illumina-fmt.c.o.d -o 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -MF CMakeFiles/abi-load.dir/writer-absolid.c.o.d -o CMakeFiles/abi-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c -[ 71%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o +[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/common-xml.c.o -MF CMakeFiles/illumina-load.dir/common-xml.c.o.d -o CMakeFiles/illumina-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/common-xml.c.o -MF CMakeFiles/helicos-load.dir/common-xml.c.o.d -o CMakeFiles/helicos-load.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 62%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -MF CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o.d -o CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/idx-mapping.c +[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/experiment-xml.c.o -MF CMakeFiles/fastq-load.dir/experiment-xml.c.o.d -o CMakeFiles/fastq-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/common-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 62%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o +[ 62%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/sequence-writer.c.o -MF CMakeFiles/latf-load.dir/sequence-writer.c.o.d -o CMakeFiles/latf-load.dir/sequence-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/sequence-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/run-xml.c.o -MF CMakeFiles/srf-load.dir/run-xml.c.o.d -o CMakeFiles/srf-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader-fmt.c.o -MF CMakeFiles/sff-load.dir/loader-fmt.c.o.d -o CMakeFiles/sff-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 63%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/map-file.c.o -MF CMakeFiles/sra-sort-cg.dir/map-file.c.o.d -o CMakeFiles/sra-sort-cg.dir/map-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/map-file.c +[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sra-writer.c.o -MF CMakeFiles/sff-load.dir/sra-writer.c.o.d -o CMakeFiles/sff-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 63%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5dir.c -[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -MF CMakeFiles/sra-sort.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -MF CMakeFiles/abi-load.dir/absolid-fmt.c.o.d -o CMakeFiles/abi-load.dir/absolid-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/absolid-fmt.c -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -[ 71%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o +[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/loader.c.o -MF CMakeFiles/sff-load.dir/loader.c.o.d -o CMakeFiles/sff-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +[ 63%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/col-pair.c.o -MF CMakeFiles/sra-sort.dir/col-pair.c.o.d -o CMakeFiles/sra-sort.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/common-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/common-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/common-xml.c +[ 63%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-file.c.o -MF CMakeFiles/srf-load.dir/loader-file.c.o.d -o CMakeFiles/srf-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +[ 64%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/common-reader.c.o -MF CMakeFiles/latf-load.dir/common-reader.c.o.d -o CMakeFiles/latf-load.dir/common-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/common-reader.c +[ 64%] Linking CXX executable ../../../test-bin/Test_Align_samextract +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Align_samextract.dir/link.txt --verbose=1 +[ 64%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/run-xml.c.o -MF CMakeFiles/abi-load.dir/run-xml.c.o.d -o CMakeFiles/abi-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 64%] Linking CXX executable ../../../bin/sratools +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/sratools.dir/link.txt --verbose=1 +[ 65%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader-fmt.c.o -MF CMakeFiles/srf-load.dir/loader-fmt.c.o.d -o CMakeFiles/srf-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/experiment-xml.c.o -MF CMakeFiles/helicos-load.dir/experiment-xml.c.o.d -o CMakeFiles/helicos-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 66%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -MF CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o.d -o CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/hdf5/hdf5file.c -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -MF CMakeFiles/srf-load.dir/sra-writer.c.o.d -o CMakeFiles/srf-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o -MF CMakeFiles/srf-load.dir/loader.c.o.d -o CMakeFiles/srf-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/sff-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); - | ^~~~~~~~ -[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c -[ 71%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-spec +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/run-xml.c.o -MF CMakeFiles/helicos-load.dir/run-xml.c.o.d -o CMakeFiles/helicos-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 66%] Linking CXX executable ../../../test-bin/Test_Vdb_dump_view-spec cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Vdb_dump_view-spec.dir/link.txt --verbose=1 +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-file.c.o -MF CMakeFiles/abi-load.dir/loader-file.c.o.d -o CMakeFiles/abi-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Align_samextract.dir/link.d "CMakeFiles/Test_Align_samextract.dir/test-samextract.cpp.o" -o ../../../test-bin/Test_Align_samextract -lsam-extract /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 66%] Built target Test_Align_samextract make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load/CMakeFiles/cg-load.dir/DependInfo.cmake "--color=" -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c -[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:3599:44: warning: "/*" within comment [-Wcomment] + 3599 | int const logLevel = klogWarn; /*G.assembleWithSecondary ? klogWarn : klogErr; make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/cg-load/CMakeFiles/cg-load.dir/build.make tools/loaders/cg-load/CMakeFiles/cg-load.dir/build +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:4332:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 4332 | rc = KLoaderMeta_Write(node, progName, __DATE__, "BAM", KAppVersion()); + | ^~~~~~~~ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o +[ 66%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o -MF CMakeFiles/cg-load.dir/cg-load.c.o.d -o CMakeFiles/cg-load.dir/cg-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/sra-writer.c.o -MF CMakeFiles/srf-load.dir/sra-writer.c.o.d -o CMakeFiles/srf-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c: In function 'DB_Fini': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c:229:65: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 229 | if( (rc = KLoaderMeta_Write(node, p->argv0, __DATE__, "Complete Genomics", KAppVersion())) != 0 ) { + | ^~~~~~~~ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-spec.dir/link.d "CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o" -o ../../../test-bin/Test_Vdb_dump_view-spec /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sratools.dir/link.d CMakeFiles/sratools.dir/sratools.cpp.o CMakeFiles/sratools.dir/config.cpp.o "CMakeFiles/sratools.dir/command-line.cpp.o" "CMakeFiles/sratools.dir/run-source.cpp.o" CMakeFiles/sratools.dir/proc.cpp.o CMakeFiles/sratools.dir/uuid.cpp.o CMakeFiles/sratools.dir/accession.cpp.o CMakeFiles/sratools.dir/service.cpp.o "CMakeFiles/sratools.dir/json-parse.cpp.o" "CMakeFiles/sratools.dir/SDL-response.cpp.o" "CMakeFiles/sratools.dir/tool-args.cpp.o" "CMakeFiles/sratools.dir/build-version.cpp.o" "CMakeFiles/sratools.dir/file-path.posix.cpp.o" CMakeFiles/sratools.dir/proc.posix.cpp.o -o ../../../bin/sratools /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sratools.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sratools sratools.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 sratools.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3 sratools +[ 66%] Linking CXX executable ../../../test-bin/Test_qa-stats_Fingerprint +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Fingerprint.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/loader.c.o -MF CMakeFiles/srf-load.dir/loader.c.o.d -o CMakeFiles/srf-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +[ 66%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-reader.c.o -MF CMakeFiles/latf-load.dir/fastq-reader.c.o.d -o CMakeFiles/latf-load.dir/fastq-reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-reader.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o +[ 66%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -MF CMakeFiles/srf-load.dir/srf.c.o.d -o CMakeFiles/srf-load.dir/srf.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader-fmt.c.o -MF CMakeFiles/abi-load.dir/loader-fmt.c.o.d -o CMakeFiles/abi-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o +[ 67%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o +[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o +[ 67%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/sra-writer.c.o -MF CMakeFiles/abi-load.dir/sra-writer.c.o.d -o CMakeFiles/abi-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -MF CMakeFiles/pacbio-load.dir/pl-context.c.o.d -o CMakeFiles/pacbio-load.dir/pl-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-context.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/experiment-xml.c.o -MF CMakeFiles/illumina-load.dir/experiment-xml.c.o.d -o CMakeFiles/illumina-load.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/row-set.c.o -MF CMakeFiles/sra-sort.dir/row-set.c.o.d -o CMakeFiles/sra-sort.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/row-set.c +[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/experiment-xml.c +[ 67%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o +[ 67%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/col-pair.c +[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/run-xml.c.o -MF CMakeFiles/fastq-load.dir/run-xml.c.o.d -o CMakeFiles/fastq-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-file.c.o -MF CMakeFiles/fastq-load.dir/loader-file.c.o.d -o CMakeFiles/fastq-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 67%] Built target Test_Vdb_dump_view-spec +[ 67%] Built target sratools make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Fingerprint.dir/link.d "CMakeFiles/Test_qa-stats_Fingerprint.dir/test-finger.cpp.o" -o ../../../test-bin/Test_qa-stats_Fingerprint /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/CMakeFiles/general-loader.dir/DependInfo.cmake "--color=" -[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/cg-load.c.o -MF CMakeFiles/cg-load.dir/cg-load.c.o.d -o CMakeFiles/cg-load.dir/cg-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c -make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/DependInfo.cmake "--color=" -[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o -MF CMakeFiles/helicos-load.dir/loader-file.c.o.d -o CMakeFiles/helicos-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-intervals.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o -[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/fastq-fmt.c.o -MF CMakeFiles/fastq-load.dir/fastq-fmt.c.o.d -o CMakeFiles/fastq-load.dir/fastq-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/fastq-fmt.c -[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o -MF CMakeFiles/sra-sort.dir/db-pair.c.o.d -o CMakeFiles/sra-sort.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c +[ 67%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/run-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c +[ 68%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/loader.c.o +[ 68%] Built target Test_qa-stats_Fingerprint +[ 68%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c +make -f tools/loaders/general-loader/CMakeFiles/general-loader.dir/build.make tools/loaders/general-loader/CMakeFiles/general-loader.dir/build +cd 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-454.c.o -MF CMakeFiles/sff-load.dir/writer-454.c.o.d -o CMakeFiles/sff-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/general-loader.cpp.o -MF CMakeFiles/general-loader.dir/general-loader.cpp.o.d -o CMakeFiles/general-loader.dir/general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/general-loader.cpp -[ 71%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o -MF CMakeFiles/makeinputs.dir/makeinputs.cpp.o.d -o CMakeFiles/makeinputs.dir/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/makeinputs.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Vdb_dump_view-spec.dir/link.d "CMakeFiles/Test_Vdb_dump_view-spec.dir/test-view-spec.cpp.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-view-spec.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-helper.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-context.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-coldefs.c.o" "CMakeFiles/Test_Vdb_dump_view-spec.dir/__/__/__/tools/external/vdb-dump/vdb-dump-str.c.o" -o ../../../test-bin/Test_Vdb_dump_view-spec /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -[ 71%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-dnbs.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c -[ 72%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-context.c.o -MF CMakeFiles/pacbio-load.dir/pl-context.c.o.d -o CMakeFiles/pacbio-load.dir/pl-context.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-context.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c: In function 'DB_Fini': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/cg-load.c:229:65: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 229 | if( (rc = KLoaderMeta_Write(node, p->argv0, __DATE__, "Complete Genomics", KAppVersion())) != 0 ) { - | ^~~~~~~~ -[ 72%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -MF CMakeFiles/general-loader.dir/protocol-parser.cpp.o.d -o CMakeFiles/general-loader.dir/protocol-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/protocol-parser.cpp -[ 72%] Built target Test_Vdb_dump_view-spec -[ 72%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c -[ 73%] Linking CXX executable ../../../bin/illumina-load -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o -[ 73%] Linking CXX executable ../../../test-bin/Test_qa-stats_Input -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-load.dir/link.txt --verbose=1 -cd 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o -MF CMakeFiles/helicos-load.dir/sra-writer.c.o.d -o CMakeFiles/helicos-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 68%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o +[ 68%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -MF CMakeFiles/srf-load.dir/srf-fmt.c.o.d -o CMakeFiles/srf-load.dir/srf-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-fmt.c +[ 68%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-tools.c.o cd 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CMakeFiles/pacbio-load.dir/pl-tools.c.o.d -o CMakeFiles/pacbio-load.dir/pl-tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-tools.c -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o -MF CMakeFiles/general-loader.dir/database-loader.cpp.o.d -o CMakeFiles/general-loader.dir/database-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp +[ 68%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/writer-absolid.c.o -MF CMakeFiles/abi-load.dir/writer-absolid.c.o.d -o CMakeFiles/abi-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp:833:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); - | ^~~~~~~~ -[ 73%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o -[ 73%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o -[ 73%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o +[ 68%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader-fmt.c.o -MF CMakeFiles/fastq-load.dir/loader-fmt.c.o.d -o CMakeFiles/fastq-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +[ 68%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o +[ 68%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-intervals.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/sra-writer.c.o -MF CMakeFiles/fastq-load.dir/sra-writer.c.o.d -o CMakeFiles/fastq-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +[ 68%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o +[ 68%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-grammar.c +[ 69%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/meta-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/loader.c.o -MF CMakeFiles/fastq-load.dir/loader.c.o.d -o CMakeFiles/fastq-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/meta-pair.c.o -MF CMakeFiles/sra-sort.dir/meta-pair.c.o.d -o CMakeFiles/sra-sort.dir/meta-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/meta-pair.c +[ 69%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-file.c.o -MF CMakeFiles/helicos-load.dir/loader-file.c.o.d -o CMakeFiles/helicos-load.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-illumina.c.o -MF CMakeFiles/fastq-load.dir/writer-illumina.c.o.d -o CMakeFiles/fastq-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c +[ 70%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-zmw.c.o -MF CMakeFiles/pacbio-load.dir/pl-zmw.c.o.d -o CMakeFiles/pacbio-load.dir/pl-zmw.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-zmw.c -[ 73%] Linking CXX executable ../../../bin/fastq-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -MF CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o.d -o CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-basecalls_cmn.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o -MF CMakeFiles/cg-load.dir/factory-mappings.c.o.d -o CMakeFiles/cg-load.dir/factory-mappings.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-load.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/illumina-load.dir/link.d "CMakeFiles/illumina-load.dir/pstring.c.o" "CMakeFiles/illumina-load.dir/common-xml.c.o" "CMakeFiles/illumina-load.dir/experiment-xml.c.o" "CMakeFiles/illumina-load.dir/run-xml.c.o" "CMakeFiles/illumina-load.dir/loader-file.c.o" "CMakeFiles/illumina-load.dir/loader-fmt.c.o" "CMakeFiles/illumina-load.dir/sra-writer.c.o" "CMakeFiles/illumina-load.dir/loader.c.o" "CMakeFiles/illumina-load.dir/writer-illumina.c.o" "CMakeFiles/illumina-load.dir/illumina-fmt.c.o" -o ../../../bin/illumina-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f illumina-load.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Input.dir/link.d "CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o" "CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o" -o ../../../test-bin/Test_qa-stats_Input /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv illumina-load illumina-load.3.2.1 -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -MF CMakeFiles/helicos-load.dir/helicos-fmt.c.o.d -o CMakeFiles/helicos-load.dir/helicos-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/helicos-fmt.c -[ 73%] Linking CXX executable ../../../bin/abi-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-load.3.2.1 illumina-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -MF CMakeFiles/helicos-load.dir/writer-helicos.c.o.d -o CMakeFiles/helicos-load.dir/writer-helicos.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-helicos.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-load.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-load.3 illumina-load -[ 73%] Linking CXX executable ../../../bin/sam-factory -[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader-fmt.c.o -MF CMakeFiles/helicos-load.dir/loader-fmt.c.o.d -o CMakeFiles/helicos-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/DependInfo.cmake "--color=" +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o +[ 70%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/sra-writer.c.o -MF CMakeFiles/helicos-load.dir/sra-writer.c.o.d -o CMakeFiles/helicos-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/row-set.c +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/db-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-factory.dir/link.txt --verbose=1 -[ 73%] Linking CXX executable ../../../test-bin/test-vdb-config-model -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb-config-model.dir/link.txt --verbose=1 +make -f tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build.make tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/loader.c.o -MF CMakeFiles/helicos-load.dir/loader.c.o.d -o CMakeFiles/helicos-load.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 70%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/makeinputs.cpp.o -MF CMakeFiles/makeinputs.dir/makeinputs.cpp.o.d -o CMakeFiles/makeinputs.dir/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/makeinputs.cpp +[ 70%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -MF CMakeFiles/makeinputs.dir/testsource.cpp.o.d -o CMakeFiles/makeinputs.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/run-xml.c.o -MF CMakeFiles/illumina-load.dir/run-xml.c.o.d -o CMakeFiles/illumina-load.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/DependInfo.cmake "--color=" -[ 73%] Built target Test_qa-stats_Input +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-454.c.o -MF CMakeFiles/fastq-load.dir/writer-454.c.o.d -o CMakeFiles/fastq-load.dir/writer-454.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-454.c +[ 70%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o +[ 70%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/build -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf.c.o -MF CMakeFiles/srf-load.dir/srf.c.o.d -o CMakeFiles/srf-load.dir/srf.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 73%] Linking CXX executable ../../../bin/sff-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-load.dir/link.txt --verbose=1 -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -MF CMakeFiles/pacbio-loadxml.dir/run-xml.c.o.d -o CMakeFiles/pacbio-loadxml.dir/run-xml.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/run-xml.c -[ 73%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -MF 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-Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-fmt.c.o -MF CMakeFiles/srf-load.dir/srf-fmt.c.o.d -o CMakeFiles/srf-load.dir/srf-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-fmt.c -[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c -[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -MF CMakeFiles/sra-sort.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c -[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-file.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c -[ 73%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -MF CMakeFiles/srf-load.dir/writer-illumina.c.o.d -o CMakeFiles/srf-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c -[ 73%] Built target illumina-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/dir-pair.c.o -MF CMakeFiles/sra-sort.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-misleading-indentation -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -MF CMakeFiles/latf-load.dir/zz_fastq-lex.c.o.d -o CMakeFiles/latf-load.dir/zz_fastq-lex.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/zz_fastq-lex.c make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/DependInfo.cmake "--color=" -[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c -[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c -[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c +[ 70%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-file.c.o +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -MF CMakeFiles/sff-load.dir/writer-ion-torrent.c.o.d -o CMakeFiles/sff-load.dir/writer-ion-torrent.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/simple-row-set.c +[ 70%] Linking CXX executable ../../../bin/sam-factory +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-factory && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-factory.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-file.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-file.c +[ 70%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -MF CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o.d -o CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 70%] Building CXX object tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -MF CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o.d -o CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/abi-load.dir/absolid-fmt.c.o -MF CMakeFiles/abi-load.dir/absolid-fmt.c.o.d -o CMakeFiles/abi-load.dir/absolid-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/absolid-fmt.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config/CMakeFiles/vdb-config.dir/DependInfo.cmake "--color=" +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-illumina.c.o -MF CMakeFiles/srf-load.dir/writer-illumina.c.o.d -o CMakeFiles/srf-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c +[ 70%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -MF CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o.d -o CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-basecalls_cmn.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build.make tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/build +make -f tools/external/vdb-config/CMakeFiles/vdb-config.dir/build.make tools/external/vdb-config/CMakeFiles/vdb-config.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings15_Read': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:248:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 248 | if( tmp[0] < 33 || tmp[0] > 126 ) { - | ~~~^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:225:14: note: 'tmp' declared here - 225 | char tmp[2]; - | ^~~ -[ 73%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o -[ 73%] Linking CXX executable ../../../bin/helicos-load +[ 70%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -MF CMakeFiles/vdb-config.dir/configure.cpp.o.d -o CMakeFiles/vdb-config.dir/configure.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/configure.cpp +[ 70%] Linking CXX executable ../../bin/gw-dumper +[ 70%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/gw-dumper.dir/link.txt --verbose=1 +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader-fmt.c.o -MF CMakeFiles/illumina-load.dir/loader-fmt.c.o.d -o CMakeFiles/illumina-load.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-evidence-dnbs.c +[ 70%] Linking CXX executable ../../../test-bin/Test_qa-stats_Input +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Input.dir/link.txt --verbose=1 +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/writer-helicos.c.o -MF CMakeFiles/helicos-load.dir/writer-helicos.c.o.d -o CMakeFiles/helicos-load.dir/writer-helicos.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-helicos.c +[ 70%] Linking CXX executable ../../../test-bin/test-vdb-config-model +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vdb-config-model.dir/link.txt --verbose=1 +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp: In function 'void run(const char*, bool, const int32_t*, const int32_t*, const int8_t*, int)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:76:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] + 76 | delete gw; + | ^~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:45:20: note: 'gw' was declared here + 45 | GeneralWriter *gw; + | ^~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] + 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); + | ^ +In file included from /usr/include/c++/14/ios:42, + from /usr/include/c++/14/ostream:40, + from /usr/include/c++/14/iostream:41, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/general-writer/general-writer.hpp:34, + from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:30: +In static member function 'static constexpr std::size_t std::char_traits::length(const char_type*)', + inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, const _Alloc&) [with = std::allocator; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:653:49, + inlined from 'void run(const char*, TestCaseType, const std::string*, int)' at /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:77:25: +/usr/include/c++/14/bits/char_traits.h:391:32: warning: 'db_schema' may be used uninitialized [-Wmaybe-uninitialized] + 391 | return __builtin_strlen(__s); + | ~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp: In function 'void run(const char*, TestCaseType, const std::string*, int)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:57:21: note: 'db_schema' was declared here + 57 | const char* db_schema; + | ^~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:101:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] + 101 | delete gw; + | ^~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:54:20: note: 'gw' was declared here + 54 | GeneralWriter *gw; + | ^~ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-factory.dir/link.d "CMakeFiles/sam-factory.dir/sam-factory.cpp.o" -o ../../../bin/sam-factory /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o +[ 70%] Built target sam-factory +make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/depend +[ 70%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o +[ 70%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/sff-load.dir/sff-fmt.c.o -MF CMakeFiles/sff-load.dir/sff-fmt.c.o.d -o CMakeFiles/sff-load.dir/sff-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sff-fmt.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/mapping-row-set.c +[ 70%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-sequence.c.o +[ 70%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/db-pair.c.o +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-sequence.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/helicos-load.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/helicos-load.dir/helicos-fmt.c.o -MF CMakeFiles/helicos-load.dir/helicos-fmt.c.o.d -o CMakeFiles/helicos-load.dir/helicos-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/helicos-fmt.c +[ 70%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -MF CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o.d -o CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sorting-row-set.c +[ 70%] Linking CXX executable ../../../bin/abi-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/abi-load.dir/link.txt --verbose=1 +[ 70%] Linking CXX executable ../../../test-bin/Test_Drivertool_FilePath +cd 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/vschema/CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -MF CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o.d -o CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp +make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 73%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/configure.cpp.o -MF CMakeFiles/vdb-config.dir/configure.cpp.o.d -o CMakeFiles/vdb-config.dir/configure.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/configure.cpp +[ 70%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-vdb-config-model.dir/link.d "CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o" -o ../../../test-bin/test-vdb-config-model /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat/CMakeFiles/sra-stat.dir/DependInfo.cmake "--color=" +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o +[ 70%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/sra-writer.c.o -MF CMakeFiles/illumina-load.dir/sra-writer.c.o.d -o CMakeFiles/illumina-load.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/id2name.c.o -MF CMakeFiles/latf-load.dir/id2name.c.o.d -o CMakeFiles/latf-load.dir/id2name.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/id2name.c +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o +cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-ion-torrent.c +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o +[ 70%] Linking CXX executable ../../../../../test-bin/bio-end-makeinputs +[ 70%] Built target gw-dumper +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time 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-Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Input.dir/link.d "CMakeFiles/Test_qa-stats_Input.dir/test-input.cpp.o" "CMakeFiles/Test_qa-stats_Input.dir/__/__/__/tools/test-tools/qa-stats/input.cpp.o" -o ../../../test-bin/Test_qa-stats_Input /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-stat/CMakeFiles/sra-stat.dir/build.make tools/external/sra-stat/CMakeFiles/sra-stat.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 70%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/loader.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c +[ 70%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/assembly-statistics.c.o +[ 70%] Built target Test_qa-stats_Input +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 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"CMakeFiles/abi-load.dir/writer-absolid.c.o" "CMakeFiles/abi-load.dir/absolid-fmt.c.o" -o ../../../bin/abi-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f abi-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv abi-load abi-load.3.2.1 -[ 74%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -MF CMakeFiles/vdb-config.dir/util.cpp.o.d -o CMakeFiles/vdb-config.dir/util.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/util.cpp +[ 70%] Building CXX object test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-load.3.2.1 abi-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -MF CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o.d -o CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/makedb.cpp +[ 70%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/protocol-parser.cpp.o -MF CMakeFiles/general-loader.dir/protocol-parser.cpp.o.d -o CMakeFiles/general-loader.dir/protocol-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/protocol-parser.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s abi-load.3 abi-load -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-vdb-config-model.dir/link.d "CMakeFiles/test-vdb-config-model.dir/test-vdb-config-model.cpp.o" -o ../../../test-bin/test-vdb-config-model /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-factory.dir/link.d "CMakeFiles/sam-factory.dir/sam-factory.cpp.o" -o ../../../bin/sam-factory /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 71%] Linking CXX executable ../../../test-bin/Test_qa-stats_Output +[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Output.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/meta-pair.c.o -MF 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/illumina-fmt.c.o -MF CMakeFiles/illumina-load.dir/illumina-fmt.c.o.d -o CMakeFiles/illumina-load.dir/illumina-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/illumina-fmt.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); + | ^~~~~~~~ +[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/illumina-load.dir/writer-illumina.c.o -MF CMakeFiles/illumina-load.dir/writer-illumina.c.o.d -o CMakeFiles/illumina-load.dir/writer-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-illumina.c +[ 71%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -MF CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o.d -o CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bio-end-makeinputs.dir/link.d "CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o" -o ../../../../../test-bin/bio-end-makeinputs ../../../../../ilib/libgeneral-writer.a +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_FilePath.dir/link.d "CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o" -o ../../../test-bin/Test_Drivertool_FilePath /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 71%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o +[ 71%] Built target Test_Drivertool_FilePath +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/fastq-loader.c.o -MF CMakeFiles/latf-load.dir/fastq-loader.c.o.d -o CMakeFiles/latf-load.dir/fastq-loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/fastq-loader.c +[ 71%] Built target bio-end-makeinputs +[ 71%] Linking CXX executable ../../../../../test-bin/idx-text-makeinputs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-makeinputs.dir/link.txt --verbose=1 +[ 71%] Built target abi-load +make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastq-load.dir/link.d "CMakeFiles/fastq-load.dir/pstring.c.o" "CMakeFiles/fastq-load.dir/common-xml.c.o" "CMakeFiles/fastq-load.dir/experiment-xml.c.o" "CMakeFiles/fastq-load.dir/run-xml.c.o" "CMakeFiles/fastq-load.dir/loader-file.c.o" "CMakeFiles/fastq-load.dir/loader-fmt.c.o" "CMakeFiles/fastq-load.dir/sra-writer.c.o" "CMakeFiles/fastq-load.dir/loader.c.o" "CMakeFiles/fastq-load.dir/writer-illumina.c.o" "CMakeFiles/fastq-load.dir/writer-454.c.o" "CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o" "CMakeFiles/fastq-load.dir/fastq-fmt.c.o" -o ../../../bin/fastq-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f fastq-load.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sff-load.dir/link.d "CMakeFiles/sff-load.dir/pstring.c.o" "CMakeFiles/sff-load.dir/common-xml.c.o" "CMakeFiles/sff-load.dir/experiment-xml.c.o" "CMakeFiles/sff-load.dir/run-xml.c.o" "CMakeFiles/sff-load.dir/loader-file.c.o" "CMakeFiles/sff-load.dir/loader-fmt.c.o" "CMakeFiles/sff-load.dir/sra-writer.c.o" "CMakeFiles/sff-load.dir/loader.c.o" "CMakeFiles/sff-load.dir/writer-454.c.o" "CMakeFiles/sff-load.dir/writer-ion-torrent.c.o" "CMakeFiles/sff-load.dir/sff-fmt.c.o" -o ../../../bin/sff-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv fastq-load fastq-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info/CMakeFiles/Build-sra-info.dir/DependInfo.cmake "--color=" +[ 71%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/database-loader.cpp.o -MF CMakeFiles/general-loader.dir/database-loader.cpp.o.d -o CMakeFiles/general-loader.dir/database-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp +[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/dir-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/dir-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/dir-pair.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sff-load.3.2.1 -[ 74%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-load.3.2.1 fastq-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader-fmt.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sff-load sff-load.3.2.1 -[ 74%] Built target sam-factory -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-load.3 fastq-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-load.3.2.1 sff-load.3 -[ 74%] Built target test-vdb-config-model -[ 75%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o +make[3]: Nothing to be done for 'test/external/sra-info/CMakeFiles/Build-sra-info.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-load.3 sff-load +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_RunSource.dir/link.d "CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" -o ../../../test-bin/Test_Drivertool_RunSource /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 71%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build.make tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o -MF CMakeFiles/general-loader.dir/main.cpp.o.d -o CMakeFiles/general-loader.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/main.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra.c.o -MF CMakeFiles/sra-stat.dir/sra.c.o.d -o CMakeFiles/sra-stat.dir/sra.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Output.dir/link.d "CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o" -o ../../../test-bin/Test_qa-stats_Output /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 71%] Building C object tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o +[ 71%] Built target Build-sra-info +[ 71%] Linking CXX executable ../../../bin/helicos-load make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/helicos-load.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-stat\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/sra-stat/CMakeFiles/sra-stat.dir/sra-stat.c.o -MF CMakeFiles/sra-stat.dir/sra-stat.c.o.d -o CMakeFiles/sra-stat.dir/sra-stat.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c +make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/depend +[ 71%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/kar/CMakeFiles/Build-kar.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -MF CMakeFiles/pacbio-load.dir/pl-consensus.c.o.d -o CMakeFiles/pacbio-load.dir/pl-consensus.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-consensus.c +[ 71%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/tbl-pair.c +[ 72%] Building CXX object tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/CMakeFiles/general-loader.dir/main.cpp.o -MF CMakeFiles/general-loader.dir/main.cpp.o.d -o CMakeFiles/general-loader.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/main.cpp +[ 72%] Linking CXX executable ../../../bin/sff-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/sff-load.dir/link.txt --verbose=1 +[ 72%] Linking CXX executable ../../test-bin/Test_VDB +[ 72%] Built target Test_qa-stats_Output +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VDB.dir/link.txt --verbose=1 +[ 72%] Built target Test_Drivertool_RunSource make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build +make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build'. +make[3]: Nothing to be done for 'test/loaders/kar/CMakeFiles/Build-kar.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 75%] Building C object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -[ 75%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -[ 75%] Built target abi-load -[ 75%] Built target fastq-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -MF CMakeFiles/vdb-config.dir/vdb-config.c.o.d -o CMakeFiles/vdb-config.dir/vdb-config.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -MF CMakeFiles/vdb-config.dir/interactive2.cpp.o.d -o CMakeFiles/vdb-config.dir/interactive2.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/interactive2.cpp -[ 75%] Linking CXX executable ../../test-bin/Test_SEARCH_agrep -[ 75%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o +[ 72%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/db-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/db-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/db-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/db-pair.c +[ 72%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o +[ 73%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o +[ 73%] Built target Build-kar +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -MF CMakeFiles/fasterq-dump.dir/arg_helper.c.o.d -o CMakeFiles/fasterq-dump.dir/arg_helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/arg_helper.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/util.cpp.o -MF CMakeFiles/vdb-config.dir/util.cpp.o.d -o CMakeFiles/vdb-config.dir/util.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/util.cpp +make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/depend +make -f ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/DependInfo.cmake "--color=" +[ 73%] Linking CXX executable ../../test-bin/Test_SEARCH_agrep +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/database-loader.cpp:833:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); + | ^~~~~~~~ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SEARCH_agrep.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/makeinputs.dir/testsource.cpp.o -MF CMakeFiles/makeinputs.dir/testsource.cpp.o.d -o CMakeFiles/makeinputs.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp -[ 75%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/helper.c.o -MF CMakeFiles/fasterq-dump.dir/helper.c.o.d -o CMakeFiles/fasterq-dump.dir/helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/helper.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/idx-text-makeinputs.dir/link.d "CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o" -o ../../../../../test-bin/idx-text-makeinputs ../../../../../ilib/libgeneral-writer.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:113: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:214:7: warning: 'sha1_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] 214 | class sha1_filter : public sha_filter @@ -5965,235 +6016,406 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/hashing.hpp:222:7: warning: 'sha256_filter' has a base 'sha_filter' which has internal linkage [-Wsubobject-linkage] 222 | class sha256_filter : public sha_filter | ^~~~~~~~~~~~~ -[ 75%] Built target Build-sra-stat -make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/depend -[ 75%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -MF CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o.d -o CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config-model.cpp -[ 75%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-consensus.c.o -MF CMakeFiles/pacbio-load.dir/pl-consensus.c.o.d -o CMakeFiles/pacbio-load.dir/pl-consensus.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-consensus.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings22_Read': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:311:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 311 | if( tmp[0] < 33 || tmp[0] > 126 ) { - | ~~~^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:287:14: note: 'tmp' declared here - 287 | char tmp[2]; - | ^~~ +make -f ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build +[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/DependInfo.cmake "--color=" -[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-illumina.c.o -MF CMakeFiles/srf-load.dir/ztr-illumina.c.o.d -o CMakeFiles/srf-load.dir/ztr-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-illumina.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build.make test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/build +make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build +[ 73%] Built target idx-text-makeinputs make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 75%] Linking CXX executable ../../bin/gw-dumper -[ 75%] Building CXX object test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/external/vdb-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/vdb-dump/CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -MF CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o.d -o CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-dump/makedb.cpp -[ 75%] Built target sff-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer && /usr/bin/cmake -E cmake_link_script CMakeFiles/gw-dumper.dir/link.txt --verbose=1 -[ 75%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/arg_helper.c.o -MF CMakeFiles/fasterq-dump.dir/arg_helper.c.o.d -o CMakeFiles/fasterq-dump.dir/arg_helper.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/arg_helper.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/helicos-load.dir/link.d "CMakeFiles/helicos-load.dir/pstring.c.o" "CMakeFiles/helicos-load.dir/common-xml.c.o" "CMakeFiles/helicos-load.dir/experiment-xml.c.o" "CMakeFiles/helicos-load.dir/run-xml.c.o" "CMakeFiles/helicos-load.dir/loader-file.c.o" "CMakeFiles/helicos-load.dir/loader-fmt.c.o" "CMakeFiles/helicos-load.dir/sra-writer.c.o" "CMakeFiles/helicos-load.dir/loader.c.o" "CMakeFiles/helicos-load.dir/writer-helicos.c.o" "CMakeFiles/helicos-load.dir/helicos-fmt.c.o" -o ../../../bin/helicos-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f helicos-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv helicos-load helicos-load.3.2.1 -[ 75%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c -[ 75%] Linking CXX executable ../../../test-bin/Test_qa-stats_Hashing -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Hashing.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s helicos-load.3.2.1 helicos-load.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s helicos-load.3 helicos-load +make[3]: Nothing to be done for 'test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 75%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -MF CMakeFiles/cg-load.dir/factory-reads.c.o.d -o CMakeFiles/cg-load.dir/factory-reads.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-reads.c -[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -[ 75%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -Wno-stringop-truncation -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -MF CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o.d -o CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/sra-writer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -MF CMakeFiles/sra-sort-cg.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c -[ 76%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX 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'CGMappings25_Read': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:382:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] - 382 | if( tmp[0] < 33 || tmp[0] > 126 ) { - | ~~~^~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:358:14: note: 'tmp' declared here - 358 | char tmp[2]; - | ^~~ -[ 76%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -[ 76%] Built target helicos-load -[ 76%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -MF CMakeFiles/cg-load.dir/factory-tag-lfr.c.o.d -o CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-tag-lfr.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o -MF CMakeFiles/cg-load.dir/f1_3.c.o.d -o CMakeFiles/cg-load.dir/f1_3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_3.c -[ 76%] Linking CXX executable ../../../test-bin/Test_qa-stats_Output -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Output.dir/link.txt --verbose=1 -[ 77%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o +[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/glob-poslen.c.o -MF CMakeFiles/sra-sort.dir/glob-poslen.c.o.d -o CMakeFiles/sra-sort.dir/glob-poslen.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/glob-poslen.c +[ 73%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o +[ 73%] Linking CXX static library ../../lib/libngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort.dir/poslen-col-pair.c.o.d -o CMakeFiles/sra-sort.dir/poslen-col-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/poslen-col-pair.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ngs-c++.dir/cmake_clean_target.cmake +[ 73%] Built target Build-make-read-filter +make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/DependInfo.cmake "--color=" +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c: In function 'print_results': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-stat/sra-stat.c:3263:22: warning: unused variable 'rc_fmt' [-Wunused-variable] + 3263 | rc_t rc_fmt = formatLoadTime(ctx->info->loadTimestamp, buf, sizeof(buf), &sz); + | ^~~~~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 74%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -MF CMakeFiles/fasterq-dump.dir/dflt_defline.c.o.d -o CMakeFiles/fasterq-dump.dir/dflt_defline.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/dflt_defline.c -[ 77%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o +/usr/bin/ar qc ../../lib/libngs-c++.a "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.d[ 74%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o +[ 74%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o.d -o 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tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -MF CMakeFiles/fasterq-dump.dir/tool_ctx.c.o.d -o CMakeFiles/fasterq-dump.dir/tool_ctx.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SEARCH_agrep.dir/link.d "CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o" "CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o" "CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o" -o ../../test-bin/Test_SEARCH_agrep /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a -lncbi-vdb ../../ilib/libksrch.a -make[3]: Leaving directory 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tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -MF CMakeFiles/srf-load.dir/srf-illumina.c.o.d -o CMakeFiles/srf-load.dir/srf-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-illumina.c -[ 77%] Built target Test_SEARCH_agrep -[ 77%] Linking CXX executable ../../../test-bin/Test_Drivertool_RunSource -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_RunSource.dir/link.txt --verbose=1 -[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o +[ 74%] Linking CXX shared library ../../lib/libngs-c++.so +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++-shared.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong 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../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/helicos-load.dir/link.d "CMakeFiles/helicos-load.dir/pstring.c.o" "CMakeFiles/helicos-load.dir/common-xml.c.o" "CMakeFiles/helicos-load.dir/experiment-xml.c.o" "CMakeFiles/helicos-load.dir/run-xml.c.o" "CMakeFiles/helicos-load.dir/loader-file.c.o" "CMakeFiles/helicos-load.dir/loader-fmt.c.o" "CMakeFiles/helicos-load.dir/sra-writer.c.o" "CMakeFiles/helicos-load.dir/loader.c.o" "CMakeFiles/helicos-load.dir/writer-helicos.c.o" "CMakeFiles/helicos-load.dir/helicos-fmt.c.o" -o ../../../bin/helicos-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f helicos-load.3.2.1 +[ 74%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o +[ 74%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -MF CMakeFiles/pacbio-load.dir/pl-passes.c.o.d -o CMakeFiles/pacbio-load.dir/pl-passes.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-passes.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv helicos-load helicos-load.3.2.1 +[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/loader.c.o -MF CMakeFiles/pacbio-loadxml.dir/loader.c.o.d -o CMakeFiles/pacbio-loadxml.dir/loader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c -[ 78%] Linking CXX executable ../../../test-bin/Test_Drivertool_FilePath -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/driver-tool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Drivertool_FilePath.dir/link.txt --verbose=1 -[ 78%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o -MF CMakeFiles/sra-sort.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s helicos-load.3.2.1 helicos-load.3 /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c: In function 'tctx_extract_short_accession': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tool_ctx.c:362:22: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 362 | ReportBuildDate( __DATE__ ); | ^~~~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/gw-dumper.dir/link.d "CMakeFiles/gw-dumper.dir/gw-dumper.cpp.o" -o ../../bin/gw-dumper ../../ilib/libgeneral-writer.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sff-load.dir/link.d "CMakeFiles/sff-load.dir/pstring.c.o" "CMakeFiles/sff-load.dir/common-xml.c.o" "CMakeFiles/sff-load.dir/experiment-xml.c.o" "CMakeFiles/sff-load.dir/run-xml.c.o" "CMakeFiles/sff-load.dir/loader-file.c.o" "CMakeFiles/sff-load.dir/loader-fmt.c.o" "CMakeFiles/sff-load.dir/sra-writer.c.o" "CMakeFiles/sff-load.dir/loader.c.o" "CMakeFiles/sff-load.dir/writer-454.c.o" "CMakeFiles/sff-load.dir/writer-ion-torrent.c.o" "CMakeFiles/sff-load.dir/sff-fmt.c.o" -o ../../../bin/sff-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s helicos-load.3 helicos-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sff-load.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 78%] Built target gw-dumper -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp: In function 'void run(const char*, bool, const int32_t*, const int32_t*, const int8_t*, int)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:76:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] - 76 | delete gw; - | ^~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/bio-end/makeinputs.cpp:45:20: note: 'gw' was declared here - 45 | GeneralWriter *gw; - | ^~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sff-load sff-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-load.3.2.1 sff-load.3 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_VDB.dir/link.d "CMakeFiles/Test_VDB.dir/test-vdb.cpp.o" -o ../../test-bin/Test_VDB -lkapp /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sff-load.3 sff-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 75%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -MF CMakeFiles/fasterq-dump.dir/inspector.c.o.d -o CMakeFiles/fasterq-dump.dir/inspector.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 75%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-mappings.c.o -MF CMakeFiles/cg-load.dir/factory-mappings.c.o.d -o CMakeFiles/cg-load.dir/factory-mappings.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c +[ 75%] Building C object tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fastq-loader\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/fastq-loader/CMakeFiles/latf-load.dir/loader-imp.c.o -MF CMakeFiles/latf-load.dir/loader-imp.c.o.d -o CMakeFiles/latf-load.dir/loader-imp.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c +[ 75%] Built target helicos-load +make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/depend +[ 75%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o +[ 75%] Linking CXX executable ../../../bin/fastq-load +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -MF CMakeFiles/pacbio-load.dir/pl-metrics.c.o.d -o CMakeFiles/pacbio-load.dir/pl-metrics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-metrics.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastq-load.dir/link.txt --verbose=1 +[ 75%] Built target Test_VDB +make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/depend +[ 75%] Built target sff-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/DependInfo.cmake "--color=" +[ 75%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o +[ 75%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -MF CMakeFiles/sra-sort.dir/ref-alignid-col.c.o.d -o CMakeFiles/sra-sort.dir/ref-alignid-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/ref-alignid-col.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -MF CMakeFiles/sra-sort-cg.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort-cg.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c +make -f libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build.make libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/DependInfo.cmake "--color=" +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c: In function 'WriteLoaderSignature': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/fastq-loader/loader-imp.c:180:48: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 180 | rc = KLoaderMeta_Write(node, progName, __DATE__, "FASTQ", KAppVersion()); + | ^~~~~~~~ +[ 75%] Linking CXX executable ../../../test-bin/vdb-dump-makedb +[ 75%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump-makedb.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/buff-writer.c.o -MF CMakeFiles/sra-sort.dir/buff-writer.c.o.d -o CMakeFiles/sra-sort.dir/buff-writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/buff-writer.c +[ 75%] Linking CXX static library ../../lib/libncbi-ngs.a +make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build +make -f libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build.make libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ncbi-ngs.dir/cmake_clean_target.cmake +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 75%] Building C object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config.c.o -MF CMakeFiles/vdb-config.dir/vdb-config.c.o.d -o CMakeFiles/vdb-config.dir/vdb-config.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config.c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c: In function 'WriteSoftwareVersionsMeta': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/loader.c:889:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 889 | rc = KLoaderMeta_Write(node, argv0, __DATE__, fe_name, fe_version); | ^~~~~~~~ -make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/depend +[ 75%] Linking CXX shared library ../../lib/libncbi-ngs.so +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-shared.dir/link.txt --verbose=1 +ir/jni_ErrorMsg.c.o" +/usr/bin/ranlib ../../lib/libngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && rm -f libngs-c++.a.3.2.1 +[ 75%] Built target Build-gw-dumper +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && mv libngs-c++.a libngs-c++.a.3.2.1 +make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SEARCH_agrep.dir/link.d "CMakeFiles/Test_SEARCH_agrep.dir/test-agrep.cpp.o" "CMakeFiles/Test_SEARCH_agrep.dir/agrep-main.c.o" "CMakeFiles/Test_SEARCH_agrep.dir/search-vdb.cpp.o" -o ../../test-bin/Test_SEARCH_agrep /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a -lncbi-vdb ../../ilib/libksrch.a make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info/CMakeFiles/Build-sra-info.dir/DependInfo.cmake "--color=" -make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a.3.2.1 libngs-c++.a.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a.3 libngs-c++.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a libngs-c++-static.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Hashing.dir/link.d "CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o" -o ../../../test-bin/Test_qa-stats_Hashing /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pacbio-fmt.c -[ 78%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -MF CMakeFiles/srf-load.dir/writer-absolid.c.o.d -o CMakeFiles/srf-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -MF CMakeFiles/srf-load.dir/ztr-absolid.c.o.d -o CMakeFiles/srf-load.dir/ztr-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-absolid.c +/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,--dependency-file=CMakeFiles/ncbi-ngs-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libncbi-ngs.so.3 -o ../../lib/libncbi-ngs.so.3.2.1 "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "language/java/CMakemake[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 75%] Built target Test_SEARCH_agrep +/usr/bin/ar qc ../../lib/libncbi-ngs.a "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadColle[ 75%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c +[ 75%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o +[ 76%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -MF CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o.d -o CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-illumina.c.o -MF CMakeFiles/srf-load.dir/srf-illumina.c.o.d -o CMakeFiles/srf-load.dir/srf-illumina.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-illumina.c +[ 76%] Built target ngs-c++ +make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/DependInfo.cmake "--color=" +[ 76%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o +[ 76%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/interactive2.cpp.o -MF CMakeFiles/vdb-config.dir/interactive2.cpp.o.d -o CMakeFiles/vdb-config.dir/interactive2.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/interactive2.cpp +[ 77%] Linking CXX executable ../../../bin/illumina-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/illumina-load.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 78%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o +make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fastq-load.dir/link.d "CMakeFiles/fastq-load.dir/pstring.c.o" "CMakeFiles/fastq-load.dir/common-xml.c.o" "CMakeFiles/fastq-load.dir/experiment-xml.c.o" "CMakeFiles/fastq-load.dir/run-xml.c.o" "CMakeFiles/fastq-load.dir/loader-file.c.o" "CMakeFiles/fastq-load.dir/loader-fmt.c.o" "CMakeFiles/fastq-load.dir/sra-writer.c.o" "CMakeFiles/fastq-load.dir/loader.c.o" "CMakeFiles/fastq-load.dir/writer-illumina.c.o" "CMakeFiles/fastq-load.dir/writer-454.c.o" "CMakeFiles/fastq-load.dir/writer-ion-torrent.c.o" "CMakeFiles/fastq-load.dir/fastq-fmt.c.o" -o ../../../bin/fastq-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f fastq-load.3.2.1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" +[ 78%] Linking CXX executable ../../../bin/latf-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libngs-c++.so.3.2.1 ../../lib/libngs-c++.so.3 ../../lib/libngs-c++.so +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/latf-load.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv fastq-load fastq-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-load.3.2.1 fastq-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fastq-load.3 fastq-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 78%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/run.c.o +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings15_Read': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:248:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 248 | if( tmp[0] < 33 || tmp[0] > 126 ) { + | ~~~^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:225:14: note: 'tmp' declared here + 225 | char tmp[2]; + | ^~~ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/run.c.o -MF CMakeFiles/sra-sort-cg.dir/run.c.o.d -o CMakeFiles/sra-sort-cg.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/run.c +[ 79%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o +[ 79%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o -MF CMakeFiles/pacbio-load.dir/pl-regions.c.o.d -o CMakeFiles/pacbio-load.dir/pl-regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-regions.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ngs-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -MF CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o.d -o CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/ngs-pileup.cpp +[ 79%] Linking CXX executable ../../../../test-bin/makeinputs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/makeinputs.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target fastq-load +make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-dump-makedb.dir/link.d "CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o" -o ../../../test-bin/vdb-dump-makedb /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/sra-info/CMakeFiles/Build-sra-info.dir/build.make test/external/sra-info/CMakeFiles/Build-sra-info.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/sra-info/CMakeFiles/Build-sra-info.dir/build'. +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/DependInfo.cmake "--color=" +[ 79%] Built target ngs-c++-shared +In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:32: +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/../database-loader.cpp:833:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); + | ^~~~~~~~ +make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Output.dir/link.d "CMakeFiles/Test_qa-stats_Output.dir/test-output.cpp.o" -o ../../../test-bin/Test_qa-stats_Output /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 78%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o +[ 79%] Built target vdb-dump-makedb +make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -MF CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o.d -o CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/id-mapper-col.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build +[ 79%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -MF CMakeFiles/fasterq-dump.dir/sbuffer.c.o.d -o CMakeFiles/fasterq-dump.dir/sbuffer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sbuffer.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Building CXX object test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -MF CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o.d -o CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup/test-ngs-pileup.cpp +[ 79%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -MF CMakeFiles/fasterq-dump.dir/err_msg.c.o.d -o CMakeFiles/fasterq-dump.dir/err_msg.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/err_msg.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:636:92: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 636 | REQUIRE_EQ ( string ( __DATE__), GetDbMetadataAttr ( m_db, "SOFTWARE/loader", "date" ) ); + | ^ +[ 79%] Building CXX object test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/align\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/usr/include/ncbi-vdb/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/../ncbi-vdb/interfaces/ext -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -MF CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o.d -o CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align/pileup_estimator.cpp +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings22_Read': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:311:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 311 | if( tmp[0] < 33 || tmp[0] > 126 ) { + | ~~~^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:287:14: note: 'tmp' declared here + 287 | char tmp[2]; + | ^~~ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/latf-load.dir/link.d "CMakeFiles/latf-load.dir/spot-assembler.c.o" "CMakeFiles/latf-load.dir/common-writer.c.o" "CMakeFiles/latf-load.dir/sequence-writer.c.o" "CMakeFiles/latf-load.dir/common-reader.c.o" "CMakeFiles/latf-load.dir/fastq-reader.c.o" "CMakeFiles/latf-load.dir/zz_fastq-grammar.c.o" "CMakeFiles/latf-load.dir/zz_fastq-lex.c.o" "CMakeFiles/latf-load.dir/id2name.c.o" "CMakeFiles/latf-load.dir/fastq-loader.c.o" "CMakeFiles/latf-load.dir/loader-imp.c.o" -o ../../../bin/latf-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +Files/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o 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Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv latf-load latf-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -MF CMakeFiles/sra-sort-cg.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c +[ 79%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/makeinputs.dir/link.d CMakeFiles/makeinputs.dir/makeinputs.cpp.o CMakeFiles/makeinputs.dir/testsource.cpp.o -o ../../../../test-bin/makeinputs ../../../../ilib/libgeneral-writer.a -lncbi-vdb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o.d -o 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-I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s latf-load.3 latf-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv illumina-load illumina-load.3.2.1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-load.3.2.1 illumina-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s illumina-load.3 illumina-load +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 79%] Built target makeinputs +[ 79%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c +[ 79%] Built target latf-load +make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/depend +ction.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" +/usr/bin/ranlib ../../lib/libncbi-ngs.a +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && rm -f libncbi-ngs.a.3.2.1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-ngs.a libncbi-ngs.a.3.2.1 +[ 80%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3.2.1 libncbi-ngs.a.3 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/run.c.o -MF CMakeFiles/sra-sort.dir/run.c.o.d -o CMakeFiles/sra-sort.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/run.c make -f test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build.make test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3 libncbi-ngs.a make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/loaders/fastq-loader/CMakeFiles/Build-latf-load.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 78%] Built target Build-sra-info -[ 78%] Built target Test_qa-stats_Output -[ 78%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-passes.c.o -MF CMakeFiles/pacbio-load.dir/pl-passes.c.o.d -o CMakeFiles/pacbio-load.dir/pl-passes.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-passes.c -[ 78%] Built target Build-latf-load -[ 79%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -MF CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o.d -o CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/capture-first-half-aligned.c -[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o -[ 79%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -[ 80%] Built target Test_qa-stats_Hashing -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-metrics.c.o -MF CMakeFiles/pacbio-load.dir/pl-metrics.c.o.d -o CMakeFiles/pacbio-load.dir/pl-metrics.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-metrics.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o -MF CMakeFiles/srf-load.dir/ztr-huffman.c.o.d -o CMakeFiles/srf-load.dir/ztr-huffman.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-huffman.c -[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -MF CMakeFiles/srf-load.dir/srf-absolid.c.o.d -o CMakeFiles/srf-load.dir/srf-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-absolid.c -[ 80%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c +[ 80%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ngs-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -MF CMakeFiles/ngs-pileup.dir/main.cpp.o.d -o CMakeFiles/ngs-pileup.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/main.cpp +[ 80%] Linking CXX executable ../../../test-bin/Test_qa-stats_Hashing +[ 80%] Built target ncbi-ngs-shared +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/test-tools/qa-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_qa-stats_Hashing.dir/link.txt --verbose=1 +[ 80%] Built target Build-latf-load +[ 80%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-pair.c make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/depend -[ 80%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/inspector.c.o -MF CMakeFiles/fasterq-dump.dir/inspector.c.o.d -o CMakeFiles/fasterq-dump.dir/inspector.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c -In file included from /usr/include/c++/14/ios:42, - from /usr/include/c++/14/ostream:40, - from /usr/include/c++/14/iostream:41, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/general-writer/general-writer.hpp:34, - from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:30: -In static member function 'static constexpr std::size_t std::char_traits::length(const char_type*)', - inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::basic_string(const _CharT*, const _Alloc&) [with = std::allocator; _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]' at /usr/include/c++/14/bits/basic_string.h:653:49, - inlined from 'void run(const char*, TestCaseType, const std::string*, int)' at /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:77:25: -/usr/include/c++/14/bits/char_traits.h:391:32: warning: 'db_schema' may be used uninitialized [-Wmaybe-uninitialized] - 391 | return __builtin_strlen(__s); - | ~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp: In function 'void run(const char*, TestCaseType, const std::string*, int)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:57:21: note: 'db_schema' was declared here - 57 | const char* db_schema; - | ^~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:101:16: warning: 'gw' may be used uninitialized [-Wmaybe-uninitialized] - 101 | delete gw; - | ^~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema/idx-text/makeinputs.cpp:54:20: note: 'gw' was declared here - 54 | GeneralWriter *gw; - | ^~ +[ 80%] Built target illumina-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a libncbi-ngs-static.a make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/DependInfo.cmake "--color=" +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 80%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -MF CMakeFiles/fasterq-dump.dir/file_tools.c.o.d -o CMakeFiles/fasterq-dump.dir/file_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/file_tools.c +[ 80%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/sra-sort.c.o -MF CMakeFiles/sra-sort.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c: In function 'insp_report': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:1155:14: warning: 'res' may be used uninitialized [-Wmaybe-uninitialized] + 1155 | rc = KOutMsg( "... is %s\n", s_acc_type ); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:248:18: note: 'res' was declared here + 248 | const char * res; + | ^~~ make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_FilePath.dir/link.d "CMakeFiles/Test_Drivertool_FilePath.dir/test-filepath.cpp.o" -o ../../../test-bin/Test_Drivertool_FilePath /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 80%] Built target Test_Drivertool_FilePath +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/writer-absolid.c.o -MF CMakeFiles/srf-load.dir/writer-absolid.c.o.d -o CMakeFiles/srf-load.dir/writer-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/writer-absolid.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build.make test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/build -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Drivertool_RunSource.dir/link.d "CMakeFiles/Test_Drivertool_RunSource.dir/test-run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/run-source.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/command-line.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/SDL-response.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/file-path.posix.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/json-parse.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/build-version.cpp.o" "CMakeFiles/Test_Drivertool_RunSource.dir/__/__/__/tools/external/driver-tool/tool-args.cpp.o" -o ../../../test-bin/Test_Drivertool_RunSource /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 80%] Linking CXX executable ../../../../../test-bin/bio-end-makeinputs -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/bio-end-makeinputs.dir/link.txt --verbose=1 -[ 80%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o +[ 80%] Built target ncbi-ngs make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/depend make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 80%] Building C object tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -MF CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o.d -o CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/pacbio-fmt.c +[ 80%] Building CXX object tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/vdb-config\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/vdb-config/CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -MF CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o.d -o CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/vdb-config/vdb-config-model.cpp make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 80%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-regions.c.o -MF CMakeFiles/pacbio-load.dir/pl-regions.c.o.d -o CMakeFiles/pacbio-load.dir/pl-regions.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-regions.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sbuffer.c.o -MF CMakeFiles/fasterq-dump.dir/sbuffer.c.o.d -o CMakeFiles/fasterq-dump.dir/sbuffer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sbuffer.c -[ 80%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -MF CMakeFiles/pacbio-load.dir/pl-progress.c.o.d -o CMakeFiles/pacbio-load.dir/pl-progress.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-progress.c -[ 80%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_tools.c.o -MF CMakeFiles/fasterq-dump.dir/file_tools.c.o.d -o CMakeFiles/fasterq-dump.dir/file_tools.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/file_tools.c -[ 80%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/err_msg.c.o -[ 80%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq.cpp -[ 80%] Building CXX object test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -MF CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o.d -o CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-id2name.cpp -[ 80%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o [ 80%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT 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-fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/var_fmt.c.o -MF CMakeFiles/fasterq-dump.dir/var_fmt.c.o.d -o CMakeFiles/fasterq-dump.dir/var_fmt.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/var_fmt.c -[ 80%] Built target Test_Drivertool_RunSource -[ 80%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/run.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/run.c.o -MF CMakeFiles/sra-sort-cg.dir/run.c.o.d -o CMakeFiles/sra-sort-cg.dir/run.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/run.c -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/DependInfo.cmake "--color=" -[ 80%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -MF CMakeFiles/sra-sort-cg.dir/sra-sort.c.o.d -o CMakeFiles/sra-sort-cg.dir/sra-sort.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/sra-sort.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c +[ 80%] Building CXX object test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -MF CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o.d -o CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-id2name.cpp +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c: In function 'CGMappings25_Read': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:382:16: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] + 382 | if( tmp[0] < 33 || tmp[0] > 126 ) { + | ~~~^~~ +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-mappings.c:358:14: note: 'tmp' declared here + 358 | char tmp[2]; + | ^~~ make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 81%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -MF CMakeFiles/pacbio-load.dir/pacbio-load.c.o.d -o CMakeFiles/pacbio-load.dir/pacbio-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c -[ 81%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o +[ 80%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o +[ 80%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/wb-test-fastq-parse.cpp -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] - 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); - | ^ -[ 81%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -MF CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o.d -o CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/xcheck-ref-align.c -[ 81%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -[ 81%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -[ 81%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o +[ 80%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/flex_printer.c.o -MF CMakeFiles/fasterq-dump.dir/flex_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/flex_printer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/flex_printer.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -MF CMakeFiles/cg-load.dir/f1_7.c.o.d -o CMakeFiles/cg-load.dir/f1_7.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_7.c +[ 80%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort.dir/csra-pair.c.o -MF CMakeFiles/sra-sort.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-pair.c +[ 80%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_dir.c.o -MF CMakeFiles/fasterq-dump.dir/temp_dir.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_dir.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_dir.c +[ 80%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pl-progress.c.o -MF CMakeFiles/pacbio-load.dir/pl-progress.c.o.d -o CMakeFiles/pacbio-load.dir/pl-progress.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pl-progress.c +[ 81%] Building C object tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/pacbio-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load -I/usr/include/hdf5/serial -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -DH5_USE_110_API -std=c11 -rdynamic -MD -MT tools/loaders/pacbio-load/CMakeFiles/pacbio-load.dir/pacbio-load.c.o -MF CMakeFiles/pacbio-load.dir/pacbio-load.c.o.d -o CMakeFiles/pacbio-load.dir/pacbio-load.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c +[ 81%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-absolid.c.o -MF CMakeFiles/srf-load.dir/ztr-absolid.c.o.d -o CMakeFiles/srf-load.dir/ztr-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-absolid.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_qa-stats_Hashing.dir/link.d "CMakeFiles/Test_qa-stats_Hashing.dir/test-hashing.cpp.o" -o ../../../test-bin/Test_qa-stats_Hashing /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 81%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-reads.c.o -MF CMakeFiles/cg-load.dir/factory-reads.c.o.d -o CMakeFiles/cg-load.dir/factory-reads.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-reads.c +[ 82%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/ztr-huffman.c.o -MF CMakeFiles/srf-load.dir/ztr-huffman.c.o.d -o CMakeFiles/srf-load.dir/ztr-huffman.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/ztr-huffman.c +[ 82%] Built target Test_qa-stats_Hashing +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 82%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/DependInfo.cmake "--color=" +[ 82%] Building C object tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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-Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/sra-load/CMakeFiles/srf-load.dir/srf-absolid.c.o -MF CMakeFiles/srf-load.dir/srf-absolid.c.o.d -o CMakeFiles/srf-load.dir/srf-absolid.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-load/srf-absolid.c +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c: In function 'pacbio_meta_entry': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c:219:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 219 | rc = KLoaderMeta_Write( node, toolname, __DATE__, "PacBio HDF5", KAppVersion() ); + | ^~~~~~~~ +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 82%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-fastq-loader.cpp +make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/depend +[ 82%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -MF CMakeFiles/cg-load.dir/factory-tag-lfr.c.o.d -o CMakeFiles/cg-load.dir/factory-tag-lfr.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/factory-tag-lfr.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/DependInfo.cmake "--color=" +make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/DependInfo.cmake "--color=" +make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/DependInfo.cmake "--color=" +[ 82%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -MF CMakeFiles/test-general-loader.dir/testsource.cpp.o.d -o CMakeFiles/test-general-loader.dir/testsource.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build +[ 82%] Linking CXX executable ../../../bin/sra-sort-cg +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort-cg.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 82%] Linking CXX executable ../../../bin/pacbio-loadxml +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-loadxml.dir/link.txt --verbose=1 +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 82%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb 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tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o +[ 83%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE 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-fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o -MF CMakeFiles/AlignTest.dir/AlignTest.cpp.o.d -o CMakeFiles/AlignTest.dir/AlignTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/AlignTest.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -MF CMakeFiles/fasterq-dump.dir/cleanup_task.c.o.d -o CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/cleanup_task.c +[ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -MF CMakeFiles/fasterq-dump.dir/index.c.o.d -o CMakeFiles/fasterq-dump.dir/index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/index.c In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/bam-loader/loader-imp.c:100: /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = fmt::v9::basic_string_view&]': @@ -6222,550 +6444,377 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((*(const fmt::v9::basic_string_view*)(& val)))' 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/depend -make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/kar /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/kar/CMakeFiles/Build-kar.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/bio-end-makeinputs.dir/link.d "CMakeFiles/bio-end-makeinputs.dir/bio-end/makeinputs.cpp.o" -o ../../../../../test-bin/bio-end-makeinputs ../../../../../ilib/libgeneral-writer.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 81%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/progress_thread.c.o -MF CMakeFiles/fasterq-dump.dir/progress_thread.c.o.d -o CMakeFiles/fasterq-dump.dir/progress_thread.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/progress_thread.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build.make test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/kar/CMakeFiles/Build-kar.dir/build.make test/loaders/kar/CMakeFiles/Build-kar.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/loaders/kar/CMakeFiles/Build-kar.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/depend -[ 81%] Built target bio-end-makeinputs -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/make-read-filter /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/DependInfo.cmake "--color=" -[ 81%] Linking CXX executable ../../test-bin/Test_VDB -make -f ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/vdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_VDB.dir/link.txt --verbose=1 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/DependInfo.cmake "--color=" -[ 82%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -MF CMakeFiles/cg-load.dir/f2_0.c.o.d -o CMakeFiles/cg-load.dir/f2_0.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_0.c -[ 82%] Building CXX object test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -[ 82%] Built target Build-kar -[ 82%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-tbl.c -[ 82%] Building C object tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/fastq-loader/CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -MF CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o.d -o CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/test-fastq-loader.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cc -DLINUX -DNDEBUG -DSEQUENCE_BEFORE_SECONDARY=0 -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-sort\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wno-unused-const-variable -std=c11 -rdynamic -MD -MT tools/loaders/sra-sort/CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -MF CMakeFiles/sra-sort-cg.dir/csra-pair.c.o.d -o CMakeFiles/sra-sort-cg.dir/csra-pair.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/sra-sort/csra-pair.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build.make test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build -make -f ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++.dir/build -[ 82%] Linking CXX executable ../../../../../test-bin/idx-text-makeinputs -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/internal/make-read-filter/CMakeFiles/Build-make-read-filter.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/vschema && /usr/bin/cmake -E cmake_link_script CMakeFiles/idx-text-makeinputs.dir/link.txt --verbose=1 -[ 82%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -[ 82%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -MF CMakeFiles/cg-load.dir/f2_4.c.o.d -o CMakeFiles/cg-load.dir/f2_4.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_4.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -MF CMakeFiles/cg-load.dir/f2_2.c.o.d -o CMakeFiles/cg-load.dir/f2_2.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_2.c -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c: In function 'pacbio_meta_entry': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/pacbio-load/pacbio-load.c:219:53: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 219 | rc = KLoaderMeta_Write( node, toolname, __DATE__, "PacBio HDF5", KAppVersion() ); - | ^~~~~~~~ -[ 82%] Linking CXX static library ../../lib/libngs-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ngs-c++.dir/cmake_clean_target.cmake -[ 82%] Built target Build-make-read-filter -[ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cleanup_task.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk 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../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dmake -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/DependInfo.cmake "--color=" -[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o -MF CMakeFiles/cg-load.dir/f2_5.c.o.d -o CMakeFiles/cg-load.dir/f2_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_5.c -make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -MF CMakeFiles/fasterq-dump.dir/lookup_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/lookup_writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/lookup_writer.c -[ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/index.c.o -MF CMakeFiles/fasterq-dump.dir/index.c.o.d -o CMakeFiles/fasterq-dump.dir/index.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/index.c -[ 83%] Linking CXX executable ../../../bin/srf-load -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/srf-load.dir/link.txt --verbose=1 [ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -[ 83%] Linking CXX executable ../../../test-bin/vdb-dump-makedb -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -MF CMakeFiles/fasterq-dump.dir/lookup_reader.c.o.d -o CMakeFiles/fasterq-dump.dir/lookup_reader.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/lookup_reader.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-dump-makedb.dir/link.txt --verbose=1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ngs-c++-shared.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_file_list.c.o -MF CMakeFiles/fasterq-dump.dir/locked_file_list.c.o.d -o CMakeFiles/fasterq-dump.dir/locked_file_list.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/locked_file_list.c [ 83%] Linking CXX executable ../../../bin/sra-sort -[ 83%] Linking CXX static library ../../lib/libncbi-ngs.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -P CMakeFiles/ncbi-ngs.dir/cmake_clean_target.cmake +[ 83%] Linking CXX executable ../../../test-bin/Test_SraInfo_Unit cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort.dir/link.txt --verbose=1 -[ 83%] Linking CXX shared library ../../lib/libngs-c++.so -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-c++-shared.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,--dependency-file=CMakeFiles/ngs-c++-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libngs-c++.so.3 -o ../../lib/libngs-c++.so.3.2.1 "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" 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"dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir[ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraInfo_Unit.dir/link.txt --verbose=1 +[ 83%] Linking CXX executable ../../../bin/pacbio-load +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-load.dir/link.txt --verbose=1 +[ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o +make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/locked_value.c.o -MF CMakeFiles/fasterq-dump.dir/locked_value.c.o.d -o CMakeFiles/fasterq-dump.dir/locked_value.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/locked_value.c -/usr/bin/ar qc ../../lib/libncbi-ngs.a "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadColle/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c: In function 'insp_report': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:1155:14: warning: 'res' may be used uninitialized [-Wmaybe-uninitialized] - 1155 | rc = KOutMsg( "... is %s\n", s_acc_type ); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/inspector.c:248:18: note: 'res' was declared here - 248 | const char * res; - | ^~~ -[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -MF CMakeFiles/cg-load.dir/file.c.o.d -o CMakeFiles/cg-load.dir/file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/idx-text-makeinputs.dir/link.d "CMakeFiles/idx-text-makeinputs.dir/idx-text/makeinputs.cpp.o" -o ../../../../../test-bin/idx-text-makeinputs ../../../../../ilib/libgeneral-writer.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -MF CMakeFiles/cg-load.dir/file-version-factory.c.o.d -o CMakeFiles/cg-load.dir/file-version-factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file-version-factory.c +make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/depend cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/file_printer.c.o -MF CMakeFiles/fasterq-dump.dir/file_printer.c.o.d -o CMakeFiles/fasterq-dump.dir/file_printer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/file_printer.c -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/DependInfo.cmake "--color=" -[ 83%] Built target idx-text-makeinputs -make -f libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build.make libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/DependInfo.cmake "--color=" -[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -MF CMakeFiles/cg-load.dir/formats.c.o.d -o CMakeFiles/cg-load.dir/formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/formats.c -[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -[ 83%] Linking CXX executable ../../../bin/pacbio-loadxml -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-loadxml.dir/link.txt --verbose=1 -[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o 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tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -MF CMakeFiles/cg-load.dir/writer-algn.c.o.d -o CMakeFiles/cg-load.dir/writer-algn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-algn.c -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build.make ngs/ngs-sdk/CMakeFiles/ncbi-ngs-shared.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build.make libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'libs/general-writer/test/CMakeFiles/Build-gw-dumper.dir/build'. +[ 83%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o +[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX 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-ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-loadxml.dir/link.d "CMakeFiles/pacbio-loadxml.dir/pstring.c.o" "CMakeFiles/pacbio-loadxml.dir/common-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/run-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-file.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o" "CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o" "CMakeFiles/pacbio-loadxml.dir/loader.c.o" "CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o" -o ../../../bin/pacbio-loadxml ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-loadxml.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_3.c.o -MF CMakeFiles/cg-load.dir/f1_3.c.o.d -o CMakeFiles/cg-load.dir/f1_3.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_3.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-loadxml pacbio-loadxml.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-loadxml.3.2.1 pacbio-loadxml.3 +[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_5.c.o -MF CMakeFiles/cg-load.dir/f1_5.c.o.d -o CMakeFiles/cg-load.dir/f1_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_5.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-sort-cg.dir/link.d "CMakeFiles/sra-sort-cg.dir/caps.c.o" "CMakeFiles/sra-sort-cg.dir/mem.c.o" "CMakeFiles/sra-sort-cg.dir/membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-membank.c.o" "CMakeFiles/sra-sort-cg.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort-cg.dir/except.c.o" "CMakeFiles/sra-sort-cg.dir/idx-mapping.c.o" "CMakeFiles/sra-sort-cg.dir/map-file.c.o" "CMakeFiles/sra-sort-cg.dir/col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/row-set.c.o" "CMakeFiles/sra-sort-cg.dir/simple-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/meta-pair.c.o" "CMakeFiles/sra-sort-cg.dir/dir-pair.c.o" "CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o" "CMakeFiles/sra-sort-cg.dir/db-pair.c.o" "CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o" "CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort-cg.dir/buff-writer.c.o" "CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort-cg.dir/run.c.o" "CMakeFiles/sra-sort-cg.dir/sra-sort.c.o" "CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o" "CMakeFiles/sra-sort-cg.dir/csra-pair.c.o" -o ../../../bin/sra-sort-cg /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma +[ 83%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-sort-cg.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-loadxml.3 pacbio-loadxml +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f1_7.c.o -MF CMakeFiles/cg-load.dir/f1_7.c.o.d -o CMakeFiles/cg-load.dir/f1_7.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f1_7.c +[ 84%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_0.c.o -MF CMakeFiles/cg-load.dir/f2_0.c.o.d -o CMakeFiles/cg-load.dir/f2_0.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_0.c +[ 84%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-sort-cg sra-sort-cg.3.2.1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 83%] Linking CXX shared library ../../lib/libncbi-ngs.so -[ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -[ 83%] Linking CXX executable ../../../bin/pacbio-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_link_script CMakeFiles/ncbi-ngs-shared.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/pacbio-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/pacbio-load.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -MF CMakeFiles/fasterq-dump.dir/merge_sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/merge_sorter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/merge_sorter.c -[ 83%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort-cg.3.2.1 sra-sort-cg.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort-cg.3 sra-sort-cg +[ 84%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/sorter.c.o -MF CMakeFiles/fasterq-dump.dir/sorter.c.o.d -o CMakeFiles/fasterq-dump.dir/sorter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/sorter.c -[ 83%] Built target Build-gw-dumper -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/build +[ 84%] Built target pacbio-loadxml +make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -fPIC -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,--dependency-file=CMakeFiles/ncbi-ngs-shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libncbi-ngs.so.3 -o ../../lib/libncbi-ngs.so.3.2.1 "dispatch/CMakeFiles/ngs-disp.dir/ReadCollectionItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReferenceSequenceItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PileupEventItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/AlignmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadGroupItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ReadItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/FragmentItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StatisticsItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/PackageItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/StringItf.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/Refcount.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/VTable.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrBlock.cpp.o" "dispatch/CMakeFiles/ngs-disp.dir/ErrorMsg.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_AlignmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_FragmentIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PackageItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupEventIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_PileupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadCollectionItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadGroupIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReadIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceIteratorItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_ReferenceSequenceItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StatisticsItf.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_Refcount.cpp.o" "language/python/CMakeFiles/ngs-bind-python.dir/py_StringItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadCollectionItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReferenceSequenceItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_PileupEventItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_AlignmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadGroupItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadIteratorItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_ReadItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_FragmentItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_StatisticsItf.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Package.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_String.cpp.o" "language/java/CMakeFiles/ngs-bind-java.dir/jni_Refcount.cpp.o" "language/java/CMake[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -[ 86%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -MF CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o.d -o CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_VDB.dir/link.d "CMakeFiles/Test_VDB.dir/test-vdb.cpp.o" -o ../../test-bin/Test_VDB -lkapp /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -MF CMakeFiles/fasterq-dump.dir/cmn_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/cmn_iter.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-evidence-intervals.c -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-dump-makedb.dir/link.d "CMakeFiles/vdb-dump-makedb.dir/makedb.cpp.o" -o ../../../test-bin/vdb-dump-makedb /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 84%] Built target sra-sort-cg +make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/depend +[ 84%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/RefTest.cpp.o -MF CMakeFiles/RefTest.dir/RefTest.cpp.o.d -o CMakeFiles/RefTest.dir/RefTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/RefTest.cpp +[ 85%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -MF CMakeFiles/fasterq-dump.dir/cmn_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/cmn_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/cmn_iter.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DependInfo.cmake "--color=" /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-sort.dir/link.d "CMakeFiles/sra-sort.dir/caps.c.o" "CMakeFiles/sra-sort.dir/mem.c.o" "CMakeFiles/sra-sort.dir/membank.c.o" "CMakeFiles/sra-sort.dir/paged-membank.c.o" "CMakeFiles/sra-sort.dir/paged-mmapbank.c.o" "CMakeFiles/sra-sort.dir/except.c.o" "CMakeFiles/sra-sort.dir/idx-mapping.c.o" "CMakeFiles/sra-sort.dir/map-file.c.o" "CMakeFiles/sra-sort.dir/col-pair.c.o" "CMakeFiles/sra-sort.dir/row-set.c.o" "CMakeFiles/sra-sort.dir/simple-row-set.c.o" "CMakeFiles/sra-sort.dir/mapping-row-set.c.o" "CMakeFiles/sra-sort.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort.dir/meta-pair.c.o" "CMakeFiles/sra-sort.dir/dir-pair.c.o" "CMakeFiles/sra-sort.dir/tbl-pair.c.o" "CMakeFiles/sra-sort.dir/db-pair.c.o" "CMakeFiles/sra-sort.dir/glob-poslen.c.o" "CMakeFiles/sra-sort.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort.dir/buff-writer.c.o" "CMakeFiles/sra-sort.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort.dir/run.c.o" "CMakeFiles/sra-sort.dir/sra-sort.c.o" "CMakeFiles/sra-sort.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort.dir/csra-tbl.c.o" "CMakeFiles/sra-sort.dir/csra-pair.c.o" -o ../../../bin/sra-sort /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/srf-load.dir/link.d "CMakeFiles/srf-load.dir/pstring.c.o" "CMakeFiles/srf-load.dir/common-xml.c.o" "CMakeFiles/srf-load.dir/experiment-xml.c.o" "CMakeFiles/srf-load.dir/run-xml.c.o" "CMakeFiles/srf-load.dir/loader-file.c.o" "CMakeFiles/srf-load.dir/loader-fmt.c.o" "CMakeFiles/srf-load.dir/sra-writer.c.o" "CMakeFiles/srf-load.dir/loader.c.o" "CMakeFiles/srf-load.dir/srf.c.o" "CMakeFiles/srf-load.dir/srf-fmt.c.o" "CMakeFiles/srf-load.dir/writer-illumina.c.o" "CMakeFiles/srf-load.dir/ztr-illumina.c.o" "CMakeFiles/srf-load.dir/srf-illumina.c.o" "CMakeFiles/srf-load.dir/writer-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-huffman.c.o" "CMakeFiles/srf-load.dir/srf-absolid.c.o" -o ../../../bin/srf-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f srf-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-sort.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv srf-load srf-load.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-sort sra-sort.3.2.1 -[ 86%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srf-load.3.2.1 srf-load.3 -/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort.3.2.1 sra-sort.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srf-load.3 srf-load -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -MF CMakeFiles/cg-load.dir/writer-seq.c.o.d -o CMakeFiles/cg-load.dir/writer-seq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-seq.c -[ 86%] Built target Test_VDB -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort.3 sra-sort -[ 86%] Built target vdb-dump-makedb -[ 86%] Linking CXX executable ../../../test-bin/Test_SraInfo_Unit -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libngs-c++.so.3.2.1 ../../lib/libngs-c++.so.3 ../../lib/libngs-c++.so -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-info && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraInfo_Unit.dir/link.txt --verbose=1 -[ 86%] Linking CXX executable ../../../bin/sra-sort-cg -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-sort && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-sort-cg.dir/link.txt --verbose=1 -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o +[ 85%] Linking CXX executable ../../../bin/srf-load +[ 85%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/sra-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/srf-load.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -MF CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/raw_read_iter.c -[ 86%] Building CXX object tools/loaders/general-loader/test/CMakeFiles/test-general-loader.dir/testsource.cpp.o -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/.. -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 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-fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -MF CMakeFiles/fasterq-dump.dir/special_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/special_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/special_iter.c -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fq_seq_ua_iter.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fq_seq_csra_iter.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -MF CMakeFiles/fasterq-dump.dir/align_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/align_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/align_iter.c -[ 86%] Built target ngs-c++-shared -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -MF CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/simple_fasta_iter.c -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -MF CMakeFiles/fasterq-dump.dir/db_join.c.o.d -o CMakeFiles/fasterq-dump.dir/db_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/db_join.c -In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:32: -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/../database-loader.cpp:833:90: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 833 | rc = KLoaderMeta_WriteWithVersion ( node, m_programName.c_str(), __DATE__, KAppVersion(), m_softwareName.c_str(), m_softwareVersion ); - | ^~~~~~~~ -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -MF CMakeFiles/fasterq-dump.dir/tbl_join.c.o.d -o CMakeFiles/fasterq-dump.dir/tbl_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tbl_join.c -[ 86%] Linking CXX executable ../../../../test-bin/makeinputs -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/makeinputs.dir/link.txt --verbose=1 -[ 86%] Built target srf-load -[ 86%] Built target sra-sort -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/test-general-loader.cpp:636:92: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 636 | REQUIRE_EQ ( string ( __DATE__), GetDbMetadataAttr ( m_db, "SOFTWARE/loader", "date" ) ); - | ^ -ir/jni_ErrorMsg.c.o" -/usr/bin/ranlib ../../lib/libngs-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && rm -f libngs-c++.a.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && mv libngs-c++.a libngs-c++.a.3.2.1 -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a.3.2.1 libngs-c++.a.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -MF CMakeFiles/fasterq-dump.dir/temp_registry.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_registry.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_registry.c -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a.3 libngs-c++.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libngs-c++.a libngs-c++-static.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -MF CMakeFiles/fasterq-dump.dir/concatenator.c.o.d -o CMakeFiles/fasterq-dump.dir/concatenator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/concatenator.c -ction.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" -/usr/bin/ranlib ../../lib/libncbi-ngs.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && rm -f libncbi-ngs.a.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && mv libncbi-ngs.a libncbi-ngs.a.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3.2.1 libncbi-ngs.a.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a.3 libncbi-ngs.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib && ln -f -s libncbi-ngs.a libncbi-ngs-static.a +make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build +[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort.3.2.1 sra-sort.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_2.c.o -MF CMakeFiles/cg-load.dir/f2_2.c.o.d -o CMakeFiles/cg-load.dir/f2_2.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_2.c +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort.3 sra-sort make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 87%] Built target ngs-c++ -[ 87%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -[ 87%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -[ 87%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -[ 87%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -MF CMakeFiles/fasterq-dump.dir/ref_inventory.c.o.d -o CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/ref_inventory.c -make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -MF CMakeFiles/fasterq-dump.dir/copy_machine.c.o.d -o CMakeFiles/fasterq-dump.dir/copy_machine.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/copy_machine.c -make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -MF CMakeFiles/fasterq-dump.dir/multi_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/multi_writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/multi_writer.c +[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraInfo_Unit.dir/link.d "CMakeFiles/Test_SraInfo_Unit.dir/test-sra-info.cpp.o" -o ../../../test-bin/Test_SraInfo_Unit /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -MF CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o.d -o CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fasterq-dump.c -make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_4.c.o -MF CMakeFiles/cg-load.dir/f2_4.c.o.d -o CMakeFiles/cg-load.dir/f2_4.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_4.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/DependInfo.cmake "--color=" -[ 87%] Built target ncbi-ngs -make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/depend -make -f ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/depend -make -f ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/depend -make -f ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/DependInfo.cmake "--color=" -make -f ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/depend -make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 85%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/DumpReferenceFASTA.cpp +[ 85%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/special_iter.c.o -MF CMakeFiles/fasterq-dump.dir/special_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/special_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/special_iter.c +[ 85%] Built target sra-sort make -f libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/DependInfo.cmake "--color=" -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/RefTest.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-loadxml.dir/link.d "CMakeFiles/pacbio-loadxml.dir/pstring.c.o" "CMakeFiles/pacbio-loadxml.dir/common-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/experiment-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/run-xml.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-file.c.o" "CMakeFiles/pacbio-loadxml.dir/loader-fmt.c.o" "CMakeFiles/pacbio-loadxml.dir/sra-writer.c.o" "CMakeFiles/pacbio-loadxml.dir/loader.c.o" "CMakeFiles/pacbio-loadxml.dir/pacbio-fmt.c.o" -o ../../../bin/pacbio-loadxml ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/DependInfo.cmake "--color=" -Files/ngs-bind-java.dir/jni_ErrorMsg.cpp.o" "../ncbi/ngs/CMakeFiles/ngs.dir/NCBI-NGS.c.o" ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReferenceWindow.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/CSRA1_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/EBI_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_DB_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadGroupInfo.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/SRA_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Statistics.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadCollection.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_PileupEvent.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Pileup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReadGroup.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Alignment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Reference.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceSequence.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Read.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Fragment.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Cursor.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Refcount.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_String.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_Id.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ErrBlock.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_FragmentBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlob.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/NGS_ReferenceBlobIterator.c.o ../ncbi/ngs/CMakeFiles/ngs.dir/VByteBlob.c.o "../ncbi/ngs-c++/CMakeFiles/ncbi-ngs-c++.dir/NCBI-NGS.cpp.o" "../ncbi/ngs-py/CMakeFiles/ngs-py.dir/py_Manager.c.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadCollection.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceSequence.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReferenceIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Reference.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Pileup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEventIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/PileupEvent.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/AlignmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Alignment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroupIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadGroup.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/ReadIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Read.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/FragmentIterator.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Fragment.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/Statistics.cpp.o" "language/c++/CMakeFiles/ngs-bind-c++.dir/StringRef.cpp.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_Manager.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_String.c.o" "../ncbi/ngs-jni/CMakeFiles/ngs-jni.dir/jni_ErrorMsg.c.o" /usr/lib/x86_64-linux-gnu/libkapp.a ../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/depend +[ 85%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fq_seq_ua_iter.c +[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/f2_5.c.o -MF CMakeFiles/cg-load.dir/f2_5.c.o.d -o CMakeFiles/cg-load.dir/f2_5.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/f2_5.c +[ 85%] Built target Test_SraInfo_Unit +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/DependInfo.cmake "--color=" -cd 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"CMakeFiles/pacbio-load.dir/pl-progress.c.o" "CMakeFiles/pacbio-load.dir/pacbio-load.c.o" -o ../../../bin/pacbio-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk && /usr/bin/cmake -E cmake_symlink_library ../../lib/libncbi-ngs.so.3.2.1 ../../lib/libncbi-ngs.so.3 ../../lib/libncbi-ngs.so -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd 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"CMakeFiles/sra-sort-cg.dir/sorting-row-set.c.o" "CMakeFiles/sra-sort-cg.dir/meta-pair.c.o" "CMakeFiles/sra-sort-cg.dir/dir-pair.c.o" "CMakeFiles/sra-sort-cg.dir/tbl-pair.c.o" "CMakeFiles/sra-sort-cg.dir/db-pair.c.o" "CMakeFiles/sra-sort-cg.dir/glob-poslen.c.o" "CMakeFiles/sra-sort-cg.dir/poslen-col-pair.c.o" "CMakeFiles/sra-sort-cg.dir/ref-alignid-col.c.o" "CMakeFiles/sra-sort-cg.dir/buff-writer.c.o" "CMakeFiles/sra-sort-cg.dir/id-mapper-col.c.o" "CMakeFiles/sra-sort-cg.dir/capture-first-half-aligned.c.o" "CMakeFiles/sra-sort-cg.dir/run.c.o" "CMakeFiles/sra-sort-cg.dir/sra-sort.c.o" "CMakeFiles/sra-sort-cg.dir/xcheck-ref-align.c.o" "CMakeFiles/sra-sort-cg.dir/csra-tbl.c.o" "CMakeFiles/sra-sort-cg.dir/csra-pair.c.o" -o ../../../bin/sra-sort-cg /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lbz2 -llzma -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-load.3.2.1 -make -f tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build.make tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/build -make -f test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-sort-cg.3.2.1 -make -f test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build.make test/internal/align/CMakeFiles/SlowTest_Align_estimator.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-loadxml.3.2.1 pacbio-loadxml.3 -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-load pacbio-load.3.2.1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-sort-cg sra-sort-cg.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-loadxml.3 pacbio-loadxml -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort-cg.3.2.1 sra-sort-cg.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-load.3.2.1 pacbio-load.3 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-sort-cg.3 sra-sort-cg -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-load.3 pacbio-load -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/build -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build.make ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -MF CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o.d -o CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/ngs-pileup.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/ngs-pileup/CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -MF CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o.d -o CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup/test-ngs-pileup.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/internal/align\" -Dx86_64 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/DumpReferenceFASTA.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 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-DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -MF CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o.d -o CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/AlignSliceTest.cpp -[ 88%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build +[ 85%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs.dir/ngstest.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 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-I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/FragTest.dir/FragTest.cpp.o -MF CMakeFiles/FragTest.dir/FragTest.cpp.o.d -o CMakeFiles/FragTest.dir/FragTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/FragTest.cpp -[ 88%] Building CXX object ngs/ngs-sdk/examples/CMakeFiles/PileupTest.dir/PileupTest.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT ngs/ngs-sdk/examples/CMakeFiles/AlignTest.dir/AlignTest.cpp.o -MF CMakeFiles/AlignTest.dir/AlignTest.cpp.o.d -o CMakeFiles/AlignTest.dir/AlignTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk/examples/AlignTest.cpp -[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE 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'/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 85%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -MF CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o.d -o CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_sra.cpp -[ 88%] Built target ncbi-ngs-shared -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/depend +[ 85%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -MF CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fq_seq_csra_iter.c +[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o +[ 85%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -MF CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o.d -o CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_sradb.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file.c.o -MF CMakeFiles/cg-load.dir/file.c.o.d -o CMakeFiles/cg-load.dir/file.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pacbio-load.dir/link.d "CMakeFiles/pacbio-load.dir/hdf5/hdf5arrayfile.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5dir.c.o" "CMakeFiles/pacbio-load.dir/hdf5/hdf5file.c.o" "CMakeFiles/pacbio-load.dir/pl-context.c.o" "CMakeFiles/pacbio-load.dir/pl-tools.c.o" "CMakeFiles/pacbio-load.dir/pl-zmw.c.o" "CMakeFiles/pacbio-load.dir/pl-basecalls_cmn.c.o" "CMakeFiles/pacbio-load.dir/pl-sequence.c.o" "CMakeFiles/pacbio-load.dir/pl-consensus.c.o" "CMakeFiles/pacbio-load.dir/pl-passes.c.o" "CMakeFiles/pacbio-load.dir/pl-metrics.c.o" "CMakeFiles/pacbio-load.dir/pl-regions.c.o" "CMakeFiles/pacbio-load.dir/pl-progress.c.o" "CMakeFiles/pacbio-load.dir/pacbio-load.c.o" -o ../../../bin/pacbio-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 85%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f pacbio-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/align_iter.c.o -MF CMakeFiles/fasterq-dump.dir/align_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/align_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/align_iter.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv pacbio-load pacbio-load.3.2.1 +[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/file-version-factory.c.o -MF CMakeFiles/cg-load.dir/file-version-factory.c.o.d -o CMakeFiles/cg-load.dir/file-version-factory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/file-version-factory.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-load.3.2.1 pacbio-load.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pacbio-load.3 pacbio-load +[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/formats.c.o -MF CMakeFiles/cg-load.dir/formats.c.o.d -o CMakeFiles/cg-load.dir/formats.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/formats.c +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/srf-load.dir/link.d "CMakeFiles/srf-load.dir/pstring.c.o" "CMakeFiles/srf-load.dir/common-xml.c.o" "CMakeFiles/srf-load.dir/experiment-xml.c.o" "CMakeFiles/srf-load.dir/run-xml.c.o" "CMakeFiles/srf-load.dir/loader-file.c.o" "CMakeFiles/srf-load.dir/loader-fmt.c.o" "CMakeFiles/srf-load.dir/sra-writer.c.o" "CMakeFiles/srf-load.dir/loader.c.o" "CMakeFiles/srf-load.dir/srf.c.o" "CMakeFiles/srf-load.dir/srf-fmt.c.o" "CMakeFiles/srf-load.dir/writer-illumina.c.o" "CMakeFiles/srf-load.dir/ztr-illumina.c.o" "CMakeFiles/srf-load.dir/srf-illumina.c.o" "CMakeFiles/srf-load.dir/writer-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-absolid.c.o" "CMakeFiles/srf-load.dir/ztr-huffman.c.o" "CMakeFiles/srf-load.dir/srf-absolid.c.o" -o ../../../bin/srf-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libkxml.a /usr/lib/x86_64-linux-gnu/libxml2.so ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f srf-load.3.2.1 +[ 85%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -MF CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o.d -o CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/simple_fasta_iter.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv srf-load srf-load.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srf-load.3.2.1 srf-load.3 +[ 85%] Built target pacbio-load make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s srf-load.3 srf-load make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/DependInfo.cmake "--color=" -[ 88%] Building CXX object tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ngs-pileup\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ngs-pileup/CMakeFiles/ngs-pileup.dir/main.cpp.o -MF CMakeFiles/ngs-pileup.dir/main.cpp.o.d -o CMakeFiles/ngs-pileup.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ngs-pileup/main.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/DependInfo.cmake "--color=" make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/build +[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o +[ 85%] Built target srf-load +[ 85%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/db_join.c.o -MF CMakeFiles/fasterq-dump.dir/db_join.c.o.d -o CMakeFiles/fasterq-dump.dir/db_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/db_join.c +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-algn.c.o -MF CMakeFiles/cg-load.dir/writer-algn.c.o.d -o CMakeFiles/cg-load.dir/writer-algn.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-algn.c +[ 85%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -MF CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o.d -o CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_sradb.cpp -[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -MF CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o.d -o CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1.cpp -[ 88%] Built target pacbio-loadxml -[ 88%] Built target Test_SraInfo_Unit -[ 88%] Built target pacbio-load -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-evidence-dnbs.c make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/DependInfo.cmake "--color=" +[ 86%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/DependInfo.cmake "--color=" -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -MF CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o.d -o CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-evidence-intervals.c make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/DependInfo.cmake "--color=" +[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -MF CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o.d -o CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/build -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/build +[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -MF CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o.d -o CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_readcollection.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -MF CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o.d -o CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp +[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/tbl_join.c.o -MF CMakeFiles/fasterq-dump.dir/tbl_join.c.o.d -o CMakeFiles/fasterq-dump.dir/tbl_join.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/tbl_join.c +[ 86%] Building C object tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/cg-load\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/loaders/cg-load/CMakeFiles/cg-load.dir/writer-seq.c.o -MF CMakeFiles/cg-load.dir/writer-seq.c.o.d -o CMakeFiles/cg-load.dir/writer-seq.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/cg-load/writer-seq.c +[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -MF CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o.d -o CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_pileup.cpp +[ 86%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/temp_registry.c.o -MF CMakeFiles/fasterq-dump.dir/temp_registry.c.o.d -o CMakeFiles/fasterq-dump.dir/temp_registry.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/temp_registry.c +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/makeinputs.dir/link.d CMakeFiles/makeinputs.dir/makeinputs.cpp.o CMakeFiles/makeinputs.dir/testsource.cpp.o -o ../../../../test-bin/makeinputs ../../../../ilib/libgeneral-writer.a -lncbi-vdb -[ 88%] Linking CXX executable ../../../bin/cg-load -cd 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libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -MF CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o.d -o CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_readcollection.cpp -[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -MF CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o.d -o CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_pileup.cpp -[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -MF CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o.d -o CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp -[ 88%] Built target makeinputs -make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/depend make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/build -[ 88%] Built target sra-sort-cg -make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/DependInfo.cmake "--color=" -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/depend +[ 86%] Linking CXX executable ../../../test-bin/FragTest +[ 86%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o +make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/depend +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -MF CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o.d -o CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_reference.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragTest.dir/link.txt --verbose=1 +[ 87%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/copy_machine.c.o -MF CMakeFiles/fasterq-dump.dir/copy_machine.c.o.d -o CMakeFiles/fasterq-dump.dir/copy_machine.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/copy_machine.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/build +[ 87%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -MF CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o.d -o CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_reference.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -MF CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o.d -o CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_fragmentblob.cpp +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -MF CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o.d -o CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_referenceblob.cpp +[ 88%] Linking CXX executable ../../../test-bin/AlignSliceTest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignSliceTest.dir/link.txt --verbose=1 +[ 88%] Linking CXX executable ../../../test-bin/AlignTest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTest.dir/link.txt --verbose=1 /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp: In constructor 'TestSource::Buffer::Buffer(const std::string&, uint32_t, uint32_t, bool)': /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/testsource.cpp:47:13: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 8 equals destination size [-Wstringop-truncation] 47 | strncpy ( m_header . dad . signature, p_signature . c_str(), sizeof m_header . dad . signature ); | ^ -[ 89%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o +[ 88%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/multi_writer.c.o -MF CMakeFiles/fasterq-dump.dir/multi_writer.c.o.d -o CMakeFiles/fasterq-dump.dir/multi_writer.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/multi_writer.c +[ 88%] Linking CXX executable ../../../bin/ngs-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-pileup.dir/link.txt --verbose=1 +[ 88%] Linking CXX executable ../../../test-bin/RefTest +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/RefTest.dir/link.txt --verbose=1 +[ 88%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/concatenator.c.o -MF CMakeFiles/fasterq-dump.dir/concatenator.c.o.d -o CMakeFiles/fasterq-dump.dir/concatenator.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/concatenator.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/AlignSliceTest.dir/link.d CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -o ../../../test-bin/AlignSliceTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/FragTest.dir/link.d CMakeFiles/FragTest.dir/FragTest.cpp.o -o ../../../test-bin/FragTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 88%] Built target FragTest +[ 88%] Built target AlignSliceTest +make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/DependInfo.cmake "--color=" +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/depend +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/AlignTest.dir/link.d CMakeFiles/AlignTest.dir/AlignTest.cpp.o -o ../../../test-bin/AlignTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/DependInfo.cmake "--color=" +[ 88%] Linking CXX executable ../../../test-bin/DumpReferenceFASTA +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/DumpReferenceFASTA.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/build +[ 88%] Linking CXX executable ../../../bin/cg-load +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/cg-load && /usr/bin/cmake -E cmake_link_script CMakeFiles/cg-load.dir/link.txt --verbose=1 +[ 88%] Built target AlignTest make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 89%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/build -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -MF CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o.d -o CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_referenceblob.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -MF CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o.d -o CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_byteblob.cpp -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/DependInfo.cmake "--color=" +[ 88%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o +[ 88%] Linking CXX executable ../../../test-bin/test-ngs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -MF CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o.d -o CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_byteblob.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs.dir/link.txt --verbose=1 +[ 89%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -MF CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o.d -o CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/SRAtest.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/depend +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/DependInfo.cmake "--color=" -[ 89%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -MF CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o.d -o CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/SRADBtest.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 89%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -MF CMakeFiles/fasterq-dump.dir/ref_inventory.c.o.d -o CMakeFiles/fasterq-dump.dir/ref_inventory.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/ref_inventory.c make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/build +[ 89%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -MF CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o.d -o CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/SRADBtest.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o +[ 90%] Linking CXX executable ../../../test-bin/PileupTest +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ngs-pileup.dir/link.d "CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o" "CMakeFiles/ngs-pileup.dir/main.cpp.o" -o ../../../bin/ngs-pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f ngs-pileup.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/PileupTest.dir/link.txt --verbose=1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv ngs-pileup ngs-pileup.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ngs-pileup.3.2.1 ngs-pileup.3 +[ 90%] Building C object tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ngs-pileup.3 ngs-pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cc -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/fasterq-dump\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c11 -rdynamic -MD -MT tools/external/fasterq-dump/CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -MF CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o.d -o CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/fasterq-dump/fasterq-dump.c +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RefTest.dir/link.d CMakeFiles/RefTest.dir/RefTest.cpp.o -o ../../../test-bin/RefTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -MF CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o.d -o CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/CSRA1test.cpp +[ 90%] Built target ngs-pileup make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -MF CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o.d -o CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/SRAtest.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/DependInfo.cmake "--color=" -[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -MF CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o.d -o CMakeFiles/test-ngs_csra1_c++.dir/CSRA1test.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/CSRA1test.cpp +[ 90%] Built target RefTest make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/depend -[ 90%] Linking CXX executable ../../../bin/general-loader -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-loader.dir/link.txt --verbose=1 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs.dir/link.d "CMakeFiles/test-ngs.dir/ngstest.cpp.o" -o ../../../test-bin/test-ngs -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/cg-load.dir/link.d "CMakeFiles/cg-load.dir/cg-load.c.o" "CMakeFiles/cg-load.dir/factory-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/factory-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/factory-mappings.c.o" "CMakeFiles/cg-load.dir/factory-reads.c.o" "CMakeFiles/cg-load.dir/factory-tag-lfr.c.o" "CMakeFiles/cg-load.dir/f1_3.c.o" "CMakeFiles/cg-load.dir/f1_5.c.o" "CMakeFiles/cg-load.dir/f1_7.c.o" "CMakeFiles/cg-load.dir/f2_0.c.o" "CMakeFiles/cg-load.dir/f2_2.c.o" "CMakeFiles/cg-load.dir/f2_4.c.o" "CMakeFiles/cg-load.dir/f2_5.c.o" "CMakeFiles/cg-load.dir/file.c.o" "CMakeFiles/cg-load.dir/file-version-factory.c.o" "CMakeFiles/cg-load.dir/formats.c.o" "CMakeFiles/cg-load.dir/writer-algn.c.o" "CMakeFiles/cg-load.dir/writer-evidence-dnbs.c.o" "CMakeFiles/cg-load.dir/writer-evidence-intervals.c.o" "CMakeFiles/cg-load.dir/writer-seq.c.o" -o ../../../bin/cg-load ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f cg-load.3.2.1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv cg-load cg-load.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cg-load.3.2.1 cg-load.3 -[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -MF CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o.d -o CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/CSRA1PileupTest.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cg-load.3.2.1 cg-load.3 make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build.make libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s cg-load.3 cg-load -[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -MF CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o.d -o CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/test-ngs-vdb.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 90%] Built target test-ngs make -f tools/external/ref-variation/CMakeFiles/ref-variation.dir/build.make tools/external/ref-variation/CMakeFiles/ref-variation.dir/depend +[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -MF CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o.d -o CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/test-ngs-vdb.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation/CMakeFiles/ref-variation.dir/DependInfo.cmake "--color=" [ 90%] Built target cg-load +[ 90%] Building CXX object libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/depend -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation/CMakeFiles/ref-variation.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D_LIBRARY -D__fext__=\"cpp\" -D__file__=\"__FILE__\" -D__mod__=\"NGS_TEST\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/usr/include/ncbi-vdb/../libs/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -fPIE -rdynamic -MD -MT libs/ngs-vdb/test/CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -MF CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o.d -o CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/CSRA1PileupTest.cpp make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation/CMakeFiles/var-expand.dir/DependInfo.cmake "--color=" +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/DumpReferenceFASTA.dir/link.d CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -o ../../../test-bin/DumpReferenceFASTA ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f tools/external/ref-variation/CMakeFiles/ref-variation.dir/build.make tools/external/ref-variation/CMakeFiles/ref-variation.dir/build +[ 90%] Built target DumpReferenceFASTA +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/CMakeFiles/sra-search.dir/DependInfo.cmake "--color=" +make -f tools/external/ref-variation/CMakeFiles/var-expand.dir/build.make tools/external/ref-variation/CMakeFiles/var-expand.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -MF CMakeFiles/var-expand.dir/common.cpp.o.d -o CMakeFiles/var-expand.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/common.cpp [ 90%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/common.cpp.o -MF CMakeFiles/ref-variation.dir/common.cpp.o.d -o CMakeFiles/ref-variation.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/common.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/general-loader.dir/link.d "CMakeFiles/general-loader.dir/general-loader.cpp.o" "CMakeFiles/general-loader.dir/protocol-parser.cpp.o" "CMakeFiles/general-loader.dir/database-loader.cpp.o" "CMakeFiles/general-loader.dir/main.cpp.o" -o ../../../bin/general-loader ../../../ilib/libgeneral-writer.a ../../../ilib/libloader.a -lkapp ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f general-loader.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv general-loader general-loader.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s general-loader.3.2.1 general-loader.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s general-loader.3 general-loader +make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 90%] Linking CXX executable ../../../bin/fasterq-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fasterq-dump.dir/link.txt --verbose=1 -[ 90%] Built target general-loader -[ 91%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -MF CMakeFiles/ref-variation.dir/helper.cpp.o.d -o CMakeFiles/ref-variation.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/helper.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fasterq-dump.dir/link.d "CMakeFiles/fasterq-dump.dir/helper.c.o" "CMakeFiles/fasterq-dump.dir/arg_helper.c.o" "CMakeFiles/fasterq-dump.dir/dflt_defline.c.o" "CMakeFiles/fasterq-dump.dir/tool_ctx.c.o" "CMakeFiles/fasterq-dump.dir/inspector.c.o" "CMakeFiles/fasterq-dump.dir/sbuffer.c.o" "CMakeFiles/fasterq-dump.dir/err_msg.c.o" "CMakeFiles/fasterq-dump.dir/file_tools.c.o" "CMakeFiles/fasterq-dump.dir/var_fmt.c.o" "CMakeFiles/fasterq-dump.dir/flex_printer.c.o" "CMakeFiles/fasterq-dump.dir/temp_dir.c.o" "CMakeFiles/fasterq-dump.dir/progress_thread.c.o" "CMakeFiles/fasterq-dump.dir/cleanup_task.c.o" "CMakeFiles/fasterq-dump.dir/index.c.o" "CMakeFiles/fasterq-dump.dir/lookup_writer.c.o" "CMakeFiles/fasterq-dump.dir/lookup_reader.c.o" "CMakeFiles/fasterq-dump.dir/locked_file_list.c.o" "CMakeFiles/fasterq-dump.dir/locked_value.c.o" "CMakeFiles/fasterq-dump.dir/file_printer.c.o" "CMakeFiles/fasterq-dump.dir/merge_sorter.c.o" "CMakeFiles/fasterq-dump.dir/sorter.c.o" "CMakeFiles/fasterq-dump.dir/cmn_iter.c.o" "CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o" "CMakeFiles/fasterq-dump.dir/special_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o" "CMakeFiles/fasterq-dump.dir/align_iter.c.o" "CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o" "CMakeFiles/fasterq-dump.dir/db_join.c.o" "CMakeFiles/fasterq-dump.dir/tbl_join.c.o" "CMakeFiles/fasterq-dump.dir/temp_registry.c.o" "CMakeFiles/fasterq-dump.dir/copy_machine.c.o" "CMakeFiles/fasterq-dump.dir/multi_writer.c.o" "CMakeFiles/fasterq-dump.dir/concatenator.c.o" "CMakeFiles/fasterq-dump.dir/ref_inventory.c.o" "CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o" -o ../../../bin/fasterq-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f fasterq-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv fasterq-dump fasterq-dump.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fasterq-dump.3.2.1 fasterq-dump.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fasterq-dump.3 fasterq-dump -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 fasterq-dump-driver +make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/build +[ 90%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/common.cpp.o -MF CMakeFiles/var-expand.dir/common.cpp.o.d -o CMakeFiles/var-expand.dir/common.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/common.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 91%] Built target fasterq-dump -[ 91%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -MF CMakeFiles/ref-variation.dir/ref-variation.cpp.o.d -o CMakeFiles/ref-variation.dir/ref-variation.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/ref-variation.cpp -[ 91%] Linking CXX executable ../../../test-bin/DumpReferenceFASTA -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/DumpReferenceFASTA.dir/link.txt --verbose=1 -[ 91%] Linking CXX executable ../../../test-bin/RefTest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/RefTest.dir/link.txt --verbose=1 +make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/DependInfo.cmake "--color=" +make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build +[ 90%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -MF CMakeFiles/sra-search.dir/main.cpp.o.d -o CMakeFiles/sra-search.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/main.cpp +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/PileupTest.dir/link.d CMakeFiles/PileupTest.dir/PileupTest.cpp.o -o ../../../test-bin/PileupTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceWindow_Slice_Filtered::Instance::test_method()': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:591:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' 591 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ -[ 91%] Linking CXX executable ../../../test-bin/AlignTest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignTest.dir/link.txt --verbose=1 -[ 91%] Linking CXX executable ../../../test-bin/AlignSliceTest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/AlignSliceTest.dir/link.txt --verbose=1 -[ 91%] Linking CXX executable ../../../test-bin/test-ngs -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs.dir/link.txt --verbose=1 +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_Wraparound::Instance::test_method()': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:669:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' 669 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ +[ 90%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -MF CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-sra-search.cpp +make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp: In member function 'void CSRA1_NGS_ReferenceGetFilteredAlignmentSlice_Wraparound_StartInWindow::Instance::test_method()': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:696:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' 696 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) @@ -6778,119 +6827,175 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/ngs-vdb/test/ngstest_csra1_refwin.cpp:740:196: note: '#pragma message: filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags.' 740 | #pragma message ( "filtering did not work prior to today's changes. I have set filter bits to allow this test to pass. the test should be fixed so that filters are set to the two desired flags." ) | ^ -[ 91%] Linking CXX executable ../../../test-bin/FragTest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragTest.dir/link.txt --verbose=1 -[ 91%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o -MF CMakeFiles/var-expand.dir/helper.cpp.o.d -o CMakeFiles/var-expand.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/helper.cpp -[ 91%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -MF CMakeFiles/var-expand.dir/var-expand.cpp.o.d -o CMakeFiles/var-expand.dir/var-expand.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/var-expand.cpp -[ 92%] Linking CXX executable ../../../test-bin/PileupTest -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/ngs/ngs-sdk/examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/PileupTest.dir/link.txt --verbose=1 -make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/CMakeFiles/sra-search.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-search/CMakeFiles/sra-search.dir/build.make tools/external/sra-search/CMakeFiles/sra-search.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 92%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/main.cpp.o -MF CMakeFiles/sra-search.dir/main.cpp.o.d -o CMakeFiles/sra-search.dir/main.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/main.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs.dir/link.d "CMakeFiles/test-ngs.dir/ngstest.cpp.o" -o ../../../test-bin/test-ngs -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/depend +[ 90%] Built target PileupTest +make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/DependInfo.cmake "--color=" +[ 91%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o +[ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/helper.cpp.o -MF CMakeFiles/ref-variation.dir/helper.cpp.o.d -o CMakeFiles/ref-variation.dir/helper.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/helper.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-sra-search-slow.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/DependInfo.cmake "--color=" -[ 92%] Built target test-ngs -make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/depend +make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/RefTest.dir/link.d CMakeFiles/RefTest.dir/RefTest.cpp.o -o ../../../test-bin/RefTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +[ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-searchblock.cpp +[ 91%] Linking CXX executable ../../../bin/general-loader +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/general-loader.dir/link.txt --verbose=1 +[ 91%] Linking CXX executable ../../../bin/fasterq-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/fasterq-dump && /usr/bin/cmake -E cmake_link_script CMakeFiles/fasterq-dump.dir/link.txt --verbose=1 +[ 91%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp +[ 92%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp +[ 92%] Building CXX object tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/ref-variation\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/ref-variation.dir/ref-variation.cpp.o -MF CMakeFiles/ref-variation.dir/ref-variation.cpp.o.d -o CMakeFiles/ref-variation.dir/ref-variation.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/ref-variation.cpp +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/general-loader.dir/link.d "CMakeFiles/general-loader.dir/general-loader.cpp.o" "CMakeFiles/general-loader.dir/protocol-parser.cpp.o" "CMakeFiles/general-loader.dir/database-loader.cpp.o" "CMakeFiles/general-loader.dir/main.cpp.o" -o ../../../bin/general-loader ../../../ilib/libgeneral-writer.a ../../../ilib/libloader.a -lkapp ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f general-loader.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv general-loader general-loader.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/fasterq-dump.dir/link.d "CMakeFiles/fasterq-dump.dir/helper.c.o" "CMakeFiles/fasterq-dump.dir/arg_helper.c.o" "CMakeFiles/fasterq-dump.dir/dflt_defline.c.o" "CMakeFiles/fasterq-dump.dir/tool_ctx.c.o" "CMakeFiles/fasterq-dump.dir/inspector.c.o" "CMakeFiles/fasterq-dump.dir/sbuffer.c.o" "CMakeFiles/fasterq-dump.dir/err_msg.c.o" "CMakeFiles/fasterq-dump.dir/file_tools.c.o" "CMakeFiles/fasterq-dump.dir/var_fmt.c.o" "CMakeFiles/fasterq-dump.dir/flex_printer.c.o" "CMakeFiles/fasterq-dump.dir/temp_dir.c.o" "CMakeFiles/fasterq-dump.dir/progress_thread.c.o" "CMakeFiles/fasterq-dump.dir/cleanup_task.c.o" "CMakeFiles/fasterq-dump.dir/index.c.o" "CMakeFiles/fasterq-dump.dir/lookup_writer.c.o" "CMakeFiles/fasterq-dump.dir/lookup_reader.c.o" "CMakeFiles/fasterq-dump.dir/locked_file_list.c.o" "CMakeFiles/fasterq-dump.dir/locked_value.c.o" "CMakeFiles/fasterq-dump.dir/file_printer.c.o" "CMakeFiles/fasterq-dump.dir/merge_sorter.c.o" "CMakeFiles/fasterq-dump.dir/sorter.c.o" "CMakeFiles/fasterq-dump.dir/cmn_iter.c.o" "CMakeFiles/fasterq-dump.dir/raw_read_iter.c.o" "CMakeFiles/fasterq-dump.dir/special_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_ua_iter.c.o" "CMakeFiles/fasterq-dump.dir/fq_seq_csra_iter.c.o" "CMakeFiles/fasterq-dump.dir/align_iter.c.o" "CMakeFiles/fasterq-dump.dir/simple_fasta_iter.c.o" "CMakeFiles/fasterq-dump.dir/db_join.c.o" "CMakeFiles/fasterq-dump.dir/tbl_join.c.o" "CMakeFiles/fasterq-dump.dir/temp_registry.c.o" "CMakeFiles/fasterq-dump.dir/copy_machine.c.o" "CMakeFiles/fasterq-dump.dir/multi_writer.c.o" "CMakeFiles/fasterq-dump.dir/concatenator.c.o" "CMakeFiles/fasterq-dump.dir/ref_inventory.c.o" "CMakeFiles/fasterq-dump.dir/fasterq-dump.c.o" -o ../../../bin/fasterq-dump /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f fasterq-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s general-loader.3.2.1 general-loader.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv fasterq-dump fasterq-dump.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s general-loader.3 general-loader +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fasterq-dump.3.2.1 fasterq-dump.3 make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/DumpReferenceFASTA.dir/link.d CMakeFiles/DumpReferenceFASTA.dir/DumpReferenceFASTA.cpp.o -o ../../../test-bin/DumpReferenceFASTA ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s fasterq-dump.3 fasterq-dump +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sratools.3.2.1 fasterq-dump-driver make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 92%] Built target general-loader +make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/depend +[ 92%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/helper.cpp.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o -MF 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tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 92%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -MF CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o.d -o CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage/compute-coverage-ngs.cpp +[ 93%] Linking CXX executable ../../../bin/sra-stat +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-stat && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-stat.dir/link.txt --verbose=1 +[ 93%] Linking CXX executable ../../../test-bin/SlowTest_FastqLoader_id2name +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-stat.dir/link.d "CMakeFiles/sra-stat.dir/assembly-statistics.c.o" "CMakeFiles/sra-stat.dir/sra.c.o" "CMakeFiles/sra-stat.dir/sra-stat.c.o" -o ../../../bin/sra-stat ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-stat.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-stat sra-stat.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-stat.3.2.1 sra-stat.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-stat.3 sra-stat make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/build +[ 93%] Built target sra-stat +make -f tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build.make tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/AlignSliceTest.dir/link.d CMakeFiles/AlignSliceTest.dir/AlignSliceTest.cpp.o -o ../../../test-bin/AlignSliceTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/dump_ref_fasta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build.make tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.d "CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o" -o ../../../test-bin/SlowTest_FastqLoader_id2name ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/build -[ 92%] Built target RefTest +[ 93%] Building CXX object tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o +[ 93%] Built target SlowTest_FastqLoader_id2name +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp +make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 92%] Built target AlignTest -[ 92%] Built target DumpReferenceFASTA -[ 92%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -MF CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-sra-search.cpp -[ 92%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-sra-search-slow.cpp -[ 92%] Built target AlignSliceTest -[ 92%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp -[ 93%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -MF CMakeFiles/sra-search.dir/searchblock.cpp.o.d -o CMakeFiles/sra-search.dir/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp -[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp -[ 93%] Built target FragTest -[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/PileupTest.dir/link.d CMakeFiles/PileupTest.dir/PileupTest.cpp.o -o ../../../test-bin/PileupTest ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lmbedx509 -lmbedtls -lmbedcrypto +make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 93%] Building CXX object tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -MF CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o.d -o CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pileup-stats/pileup-stats.cpp +make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target PileupTest -[ 93%] Linking CXX executable ../../../bin/vdb-config +make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 94%] Linking CXX executable ../../../bin/compute-coverage-ngs +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage-ngs.dir/link.txt --verbose=1 +[ 95%] Building CXX object test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/ngs/testy-the-bear\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -MF CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o.d -o CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/testy-the-bear/testy-the-bear.cpp +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp: In static member function 'static void DumpReferenceFASTA::process(const ngs::Reference&, const Range&)': +/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp:184:30: warning: catching polymorphic type 'class ngs::ErrorMsg' by value [-Wcatch-value=] + 184 | catch ( ErrorMsg x ) + | ^ +[ 95%] Linking CXX executable ../../../bin/vdb-config cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E cmake_link_script CMakeFiles/vdb-config.dir/link.txt --verbose=1 -[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp -[ 93%] Linking CXX executable ../../../test-bin/SlowTest_FastqLoader_id2name -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.txt --verbose=1 -[ 93%] Linking CXX executable ../../../bin/ngs-pileup -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngs-pileup.dir/link.txt --verbose=1 +[ 95%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp +[ 95%] Linking CXX executable ../../../test-bin/Test_Ngs_Pileup +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Ngs_Pileup.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/compute-coverage-ngs.dir/link.d "CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o" -o ../../../bin/compute-coverage-ngs ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f compute-coverage-ngs.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv compute-coverage-ngs compute-coverage-ngs.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3.2.1 compute-coverage-ngs.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3 compute-coverage-ngs +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 95%] Built target compute-coverage-ngs +make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/depend +[ 95%] Building CXX object tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/var-expand\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/ref-variation/CMakeFiles/var-expand.dir/var-expand.cpp.o -MF CMakeFiles/var-expand.dir/var-expand.cpp.o.d -o CMakeFiles/var-expand.dir/var-expand.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/var-expand.cpp +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/vdb-config.dir/link.d "CMakeFiles/vdb-config.dir/configure.cpp.o" "CMakeFiles/vdb-config.dir/util.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config.c.o" "CMakeFiles/vdb-config.dir/interactive2.cpp.o" "CMakeFiles/vdb-config.dir/vdb-config-model.cpp.o" -o ../../../bin/vdb-config ../../../ilib/libtui_cpp.a ../../../ilib/libtui.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f vdb-config.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv vdb-config vdb-config.3.2.1 +[ 95%] Built target Build-ngs-pileup +make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-config.3.2.1 vdb-config.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s vdb-config.3 vdb-config +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build.make test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/vdb-config && /usr/bin/cmake -E copy /usr/include/ncbi-vdb/kfg/ncbi/default.kfg /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/ncbi/default.kfg +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/sra-stat/CMakeFiles/Build-sra-stat.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/depend +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 95%] Built target Build-sra-stat +make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/DependInfo.cmake "--color=" -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SlowTest_FastqLoader_id2name.dir/link.d "CMakeFiles/SlowTest_FastqLoader_id2name.dir/test-id2name.cpp.o" -o ../../../test-bin/SlowTest_FastqLoader_id2name ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 93%] Built target vdb-config +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/DependInfo.cmake "--color=" +[ 95%] Built target vdb-config +make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/depend +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/DependInfo.cmake "--color=" +[ 95%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build.make tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Built target SlowTest_FastqLoader_id2name -[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp -[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/test-searchblock.cpp -[ 93%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ngs-pileup.dir/link.d "CMakeFiles/ngs-pileup.dir/ngs-pileup.cpp.o" "CMakeFiles/ngs-pileup.dir/main.cpp.o" -o ../../../bin/ngs-pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f ngs-pileup.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv ngs-pileup ngs-pileup.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ngs-pileup.3.2.1 ngs-pileup.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ngs-pileup.3 ngs-pileup +make[3]: Nothing to be done for 'tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 93%] Linking CXX executable ../../../bin/var-expand -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/var-expand.dir/link.txt --verbose=1 -[ 94%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -[ 94%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -MF CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o.d -o CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp -[ 94%] Built target ngs-pileup -[ 94%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp -[ 94%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o +make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build +make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 95%] Built target Build-general-loader +[ 95%] Built target Build-vdb-config +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/searchblock.cpp.o -MF CMakeFiles/sra-search.dir/searchblock.cpp.o.d -o CMakeFiles/sra-search.dir/searchblock.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/searchblock.cpp +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp -[ 94%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp +[ 96%] Linking CXX executable ../../../bin/dump-ref-fasta +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-ref-fasta.dir/link.txt --verbose=1 +[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp +[ 96%] Linking CXX executable ../../../../test-bin/testy-the-bear +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/cmake -E cmake_link_script CMakeFiles/testy-the-bear.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Ngs_Pileup.dir/link.d "CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o" -o ../../../test-bin/Test_Ngs_Pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target Test_Ngs_Pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h: In instantiation of 'constexpr fmt::v9::detail::value fmt::v9::detail::make_value(T&&) [with Context = fmt::v9::basic_format_context; T = const std::__cxx11::basic_string&]': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1777:29: required from 'constexpr fmt::v9::detail::value fmt::v9::detail::make_arg(T&&) [with bool IS_PACKED = true; Context = fmt::v9::basic_format_context; type = fmt::v9::detail::type::string_type; T = const std::__cxx11::basic_string&; typename std::enable_if::type = 0]' 1777 | return make_value(val); @@ -6929,166 +7034,97 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/bundled/core.h:1735:46: note: the temporary was destroyed at the end of the full expression 'fmt::v9::detail::arg_mapper >().fmt::v9::detail::arg_mapper >::map >((* & val))' 1735 | const auto& arg = arg_mapper().map(FMT_FORWARD(val)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/var-expand.dir/link.d "CMakeFiles/var-expand.dir/common.cpp.o" "CMakeFiles/var-expand.dir/helper.cpp.o" "CMakeFiles/var-expand.dir/var-expand.cpp.o" -o ../../../bin/var-expand ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f var-expand.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv var-expand var-expand.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s var-expand.3.2.1 var-expand.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s var-expand.3 var-expand -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 94%] Built target var-expand -make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/DependInfo.cmake "--color=" -[ 94%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -[ 94%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -MF CMakeFiles/sra-search.dir/vdb-search.cpp.o.d -o CMakeFiles/sra-search.dir/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -MF CMakeFiles/sra-search.dir/referencematchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build.make tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 94%] Building CXX object tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/compute-coverage/CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -MF CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o.d -o CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/compute-coverage/compute-coverage-ngs.cpp -[ 94%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp -make -f tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build.make tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/dump_ref_fasta /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DependInfo.cmake "--color=" -[ 94%] Linking CXX executable ../../../bin/rnd2sra +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -MF CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp +[ 96%] Linking CXX executable ../../../bin/rnd2sra cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/rnd2sra && /usr/bin/cmake -E cmake_link_script CMakeFiles/rnd2sra.dir/link.txt --verbose=1 +[ 96%] Linking CXX executable ../../../test-bin/SlowTest_Align_estimator +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_Align_estimator.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dump-ref-fasta.dir/link.d "CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o" -o ../../../bin/dump-ref-fasta ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f dump-ref-fasta.3.2.1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testy-the-bear.dir/link.d "CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o" -o ../../../../test-bin/testy-the-bear /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a ../../../../lib/libncbi-ngs-c++.a ../../../../lib/libncbi-ngs.a ../../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build.make tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 94%] Building CXX object tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/internal/dump_ref_fasta/CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -MF CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o.d -o CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp -make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv dump-ref-fasta dump-ref-fasta.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-ref-fasta.3.2.1 dump-ref-fasta.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-ref-fasta.3 dump-ref-fasta +[ 96%] Built target testy-the-bear make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build.make tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 94%] Building CXX object tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/test-tools/pileup-stats/CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -MF CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o.d -o CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/test-tools/pileup-stats/pileup-stats.cpp -make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/DependInfo.cmake "--color=" +[ 96%] Built target dump-ref-fasta +[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp +[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/blobmatchiterator.cpp +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -MF CMakeFiles/sra-search.dir/referencematchiterator.cpp.o.d -o CMakeFiles/sra-search.dir/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp +[ 96%] Building CXX object tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"tools/sra-search\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/CMakeFiles/sra-search.dir/vdb-search.cpp.o -MF CMakeFiles/sra-search.dir/vdb-search.cpp.o.d -o CMakeFiles/sra-search.dir/vdb-search.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/vdb-search.cpp /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rnd2sra.dir/link.d CMakeFiles/rnd2sra.dir/src/rnd2sra.cpp.o -o ../../../bin/rnd2sra /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lstdc++fs make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target rnd2sra +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SlowTest_Align_estimator.dir/link.d CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -o ../../../test-bin/SlowTest_Align_estimator ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build.make test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 94%] Built target rnd2sra -make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/depend -make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/DependInfo.cmake "--color=" -[ 95%] Building CXX object test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -D__mod__=\"test/ngs/testy-the-bear\" -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ncbi/ngs -I/build/reproducible-path/sra-sdk-3.2.1+dfsg -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/external/ngs/testy-the-bear/CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -MF CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o.d -o CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/ngs/testy-the-bear/testy-the-bear.cpp -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build.make test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build.make test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build -make[3]: Nothing to be done for 'test/external/vdb-config/CMakeFiles/Build-vdb-config.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/external/ngs-pileup/CMakeFiles/Build-ngs-pileup.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target Build-ngs-pileup -make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/depend -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/DependInfo.cmake "--color=" -[ 95%] Built target Build-vdb-config -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build.make tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build -make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'tools/loaders/general-loader/test/CMakeFiles/Build-general-loader.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 95%] Built target Build-general-loader -[ 96%] Linking CXX executable ../../../bin/compute-coverage-ngs -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/compute-coverage && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute-coverage-ngs.dir/link.txt --verbose=1 -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp: In static member function 'static void DumpReferenceFASTA::process(const ngs::Reference&, const Range&)': -/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp:184:30: warning: catching polymorphic type 'class ngs::ErrorMsg' by value [-Wcatch-value=] - 184 | catch ( ErrorMsg x ) - | ^ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/compute-coverage-ngs.dir/link.d "CMakeFiles/compute-coverage-ngs.dir/compute-coverage-ngs.cpp.o" -o ../../../bin/compute-coverage-ngs ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f compute-coverage-ngs.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv compute-coverage-ngs compute-coverage-ngs.3.2.1 +[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o +[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o +[ 96%] Linking CXX executable ../../../bin/pileup-stats +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/fragmentmatchiterator.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pileup-stats.dir/link.txt --verbose=1 +[ 96%] Built target SlowTest_Align_estimator +[ 96%] Building CXX object tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test/.. -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT tools/external/sra-search/test/CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -MF CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o.d -o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/referencematchiterator.cpp +[ 96%] Linking CXX executable ../../../../test-bin/Test_SraSearch_SearchBlock +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearch_SearchBlock.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqLoader -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3.2.1 compute-coverage-ngs.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s compute-coverage-ngs.3 compute-coverage-ngs +[ 96%] Linking CXX executable ../../../bin/var-expand +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/var-expand.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pileup-stats.dir/link.d "CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o" -o ../../../bin/pileup-stats ../../../ilib/libgeneral-writer.a ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f pileup-stats.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv pileup-stats pileup-stats.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pileup-stats.3.2.1 pileup-stats.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pileup-stats.3 pileup-stats +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target pileup-stats +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearch_SearchBlock.dir/link.d "CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o" CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -o ../../../../test-bin/Test_SraSearch_SearchBlock ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lncbi-vdb ../../../../ilib/libksrch.a /usr/lib/x86_64-linux-gnu/libkapp.a -lncbi-vdb make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqParse -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.txt --verbose=1 -[ 96%] Built target compute-coverage-ngs -[ 96%] Linking CXX executable ../../../../test-bin/testy-the-bear -[ 96%] Linking CXX executable ../../../bin/ref-variation -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs/testy-the-bear && /usr/bin/cmake -E cmake_link_script CMakeFiles/testy-the-bear.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/ref-variation.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqLoader.dir/test-fastq-loader.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqLoader ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +[ 96%] Built target Test_SraSearch_SearchBlock make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Built target Test_FastqLoader_WbFastqLoader -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqParse ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/testy-the-bear.dir/link.d "CMakeFiles/testy-the-bear.dir/testy-the-bear.cpp.o" -o ../../../../test-bin/testy-the-bear /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a ../../../../lib/libncbi-ngs-c++.a ../../../../lib/libncbi-ngs.a ../../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -[ 96%] Built target Test_FastqLoader_WbFastqParse +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/var-expand.dir/link.d "CMakeFiles/var-expand.dir/common.cpp.o" "CMakeFiles/var-expand.dir/helper.cpp.o" "CMakeFiles/var-expand.dir/var-expand.cpp.o" -o ../../../bin/var-expand ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f var-expand.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv var-expand var-expand.3.2.1 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s var-expand.3.2.1 var-expand.3 +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s var-expand.3 var-expand make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Linking CXX executable ../../../test-bin/SlowTest_Align_estimator -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/internal/align && /usr/bin/cmake -E cmake_link_script CMakeFiles/SlowTest_Align_estimator.dir/link.txt --verbose=1 +[ 96%] Built target var-expand +[ 96%] Linking CXX executable ../../../bin/ref-variation +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/ref-variation && /usr/bin/cmake -E cmake_link_script CMakeFiles/ref-variation.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ref-variation.dir/link.d "CMakeFiles/ref-variation.dir/common.cpp.o" "CMakeFiles/ref-variation.dir/helper.cpp.o" "CMakeFiles/ref-variation.dir/ref-variation.cpp.o" -o ../../../bin/ref-variation ../../../ilib/libtk-version.a -lkapp ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f ref-variation.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv ref-variation ref-variation.3.2.1 -[ 96%] Built target testy-the-bear cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ref-variation.3.2.1 ref-variation.3 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s ref-variation.3 ref-variation make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Linking CXX executable ../../../test-bin/Test_Ngs_Pileup -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/external/ngs-pileup && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_Ngs_Pileup.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable ../../../../test-bin/Test_SraSearch_SearchBlock +[ 96%] Built target ref-variation +[ 96%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastqParse +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastqParse.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastqParse.dir/wb-test-fastq-parse.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastqParse ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target Test_FastqLoader_WbFastqParse [ 96%] Linking CXX executable ../../../test-bin/test-byteblob -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearch_SearchBlock.dir/link.txt --verbose=1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-byteblob.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable ../../../bin/dump-ref-fasta -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/internal/dump_ref_fasta && /usr/bin/cmake -E cmake_link_script CMakeFiles/dump-ref-fasta.dir/link.txt --verbose=1 -[ 96%] Built target ref-variation [ 96%] Linking CXX executable ../../../bin/sra-search cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search && /usr/bin/cmake -E cmake_link_script CMakeFiles/sra-search.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable ../../../bin/pileup-stats -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/pileup-stats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pileup-stats.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dump-ref-fasta.dir/link.d "CMakeFiles/dump-ref-fasta.dir/DumpReferenceFASTA.cpp.o" -o ../../../bin/dump-ref-fasta ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f dump-ref-fasta.3.2.1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearch_SearchBlock.dir/link.d "CMakeFiles/Test_SraSearch_SearchBlock.dir/test-searchblock.cpp.o" CMakeFiles/Test_SraSearch_SearchBlock.dir/__/searchblock.cpp.o -o ../../../../test-bin/Test_SraSearch_SearchBlock ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -lncbi-vdb ../../../../ilib/libksrch.a /usr/lib/x86_64-linux-gnu/libkapp.a -lncbi-vdb -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv dump-ref-fasta dump-ref-fasta.3.2.1 -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target Test_SraSearch_SearchBlock -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-ref-fasta.3.2.1 dump-ref-fasta.3 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_Ngs_Pileup.dir/link.d "CMakeFiles/Test_Ngs_Pileup.dir/test-ngs-pileup.cpp.o" -o ../../../test-bin/Test_Ngs_Pileup ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s dump-ref-fasta.3 dump-ref-fasta -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/SlowTest_Align_estimator.dir/link.d CMakeFiles/SlowTest_Align_estimator.dir/pileup_estimator.cpp.o -o ../../../test-bin/SlowTest_Align_estimator ../../../lib/libncbi-ngs-c++.a ../../../lib/libngs-c++.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto ../../../ilib/libngs.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target Test_Ngs_Pileup -[ 96%] Built target dump-ref-fasta -[ 96%] Built target SlowTest_Align_estimator /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-byteblob.dir/link.d "CMakeFiles/test-byteblob.dir/ngstest_byteblob.cpp.o" -o ../../../test-bin/test-byteblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Built target test-byteblob -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/pileup-stats.dir/link.d "CMakeFiles/pileup-stats.dir/pileup-stats.cpp.o" -o ../../../bin/pileup-stats ../../../ilib/libgeneral-writer.a ../../../lib/libncbi-ngs.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sra-search.dir/link.d "CMakeFiles/sra-search.dir/main.cpp.o" "CMakeFiles/sra-search.dir/searchblock.cpp.o" "CMakeFiles/sra-search.dir/fragmentmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/blobmatchiterator.cpp.o" "CMakeFiles/sra-search.dir/referencematchiterator.cpp.o" "CMakeFiles/sra-search.dir/vdb-search.cpp.o" -o ../../../bin/sra-search ../../../ilib/libngs-vdb.a ../../../lib/libncbi-ngs.a ../../../ilib/libtk-version.a -Wl,-Bstatic -lkapp -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a ../../../ilib/libksrch.a -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f pileup-stats.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && rm -f sra-search.3.2.1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv pileup-stats pileup-stats.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && mv sra-search sra-search.3.2.1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-search.3.2.1 sra-search.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pileup-stats.3.2.1 pileup-stats.3 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s pileup-stats.3 pileup-stats cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin && ln -f -s sra-search.3 sra-search make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target pileup-stats [ 96%] Built target sra-search make -f tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build.make tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/depend make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' @@ -7099,6 +7135,8 @@ make[3]: Nothing to be done for 'tools/external/sra-search/test/CMakeFiles/Build-sra-search.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Built target Build-sra-search +[ 96%] Linking CXX executable ../../../../test-bin/Test_SraSearchSlow +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearchSlow.dir/link.txt --verbose=1 /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3SelectNew': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:115649:10: warning: function may return address of local variable [-Wreturn-local-addr] 115649 | return pNew; @@ -7106,51 +7144,69 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:115609:10: note: declared here 115609 | Select standin; | ^~~~~~~ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearchSlow.dir/link.d "CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o" "CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o" CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -o ../../../../test-bin/Test_SraSearchSlow ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a ../../../../ilib/libksrch.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target Test_SraSearchSlow +[ 96%] Linking CXX executable ../../../test-bin/test-fragmentblob +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fragmentblob.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-fragmentblob.dir/link.d "CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o" -o ../../../test-bin/test-fragmentblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 96%] Built target test-fragmentblob [ 96%] Linking CXX executable ../../../test-bin/test-ngs_csra1pileup++ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1pileup++.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable ../../../../test-bin/Test_SraSearchSlow -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearchSlow.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1pileup++.dir/link.d "CMakeFiles/test-ngs_csra1pileup++.dir/CSRA1PileupTest.cpp.o" -o ../../../test-bin/test-ngs_csra1pileup++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Built target test-ngs_csra1pileup++ -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearchSlow.dir/link.d "CMakeFiles/Test_SraSearchSlow.dir/test-sra-search-slow.cpp.o" "CMakeFiles/Test_SraSearchSlow.dir/__/vdb-search.cpp.o" CMakeFiles/Test_SraSearchSlow.dir/__/searchblock.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/blobmatchiterator.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/fragmentmatchiterator.cpp.o CMakeFiles/Test_SraSearchSlow.dir/__/referencematchiterator.cpp.o -o ../../../../test-bin/Test_SraSearchSlow ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a ../../../../ilib/libksrch.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 96%] Built target Test_SraSearchSlow [ 97%] Linking CXX executable ../../../../test-bin/Test_SraSearch cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/external/sra-search/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_SraSearch.dir/link.txt --verbose=1 -[ 97%] Linking CXX executable ../../../test-bin/test-fragmentblob -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fragmentblob.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-fragmentblob.dir/link.d "CMakeFiles/test-fragmentblob.dir/ngstest_fragmentblob.cpp.o" -o ../../../test-bin/test-fragmentblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target test-fragmentblob /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_SraSearch.dir/link.d "CMakeFiles/Test_SraSearch.dir/test-sra-search.cpp.o" "CMakeFiles/Test_SraSearch.dir/__/vdb-search.cpp.o" CMakeFiles/Test_SraSearch.dir/__/searchblock.cpp.o CMakeFiles/Test_SraSearch.dir/__/blobmatchiterator.cpp.o CMakeFiles/Test_SraSearch.dir/__/fragmentmatchiterator.cpp.o CMakeFiles/Test_SraSearch.dir/__/referencematchiterator.cpp.o -o ../../../../test-bin/Test_SraSearch ../../../../ilib/libngs-vdb.a ../../../../lib/libncbi-ngs.a -Wl,-Bstatic -lktst -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../../ilib/libtk-version.a ../../../../ilib/libksrch.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target Test_SraSearch -[ 97%] Linking CXX executable ../../../test-bin/test-ngs_csra1_refwin -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_refwin.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_refwin.dir/link.d "CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o" -o ../../../test-bin/test-ngs_csra1_refwin -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target test-ngs_csra1_refwin -[ 97%] Linking CXX executable ../../../test-bin/test-ngs-vdb [ 97%] Linking CXX executable ../../../test-bin/test-ngs_csra1_pileup cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_pileup.dir/link.txt --verbose=1 -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs-vdb.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_pileup.dir/link.d "CMakeFiles/test-ngs_csra1_pileup.dir/ngstest_csra1_pileup.cpp.o" -o ../../../test-bin/test-ngs_csra1_pileup -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs-vdb.dir/link.d "CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o" -o ../../../test-bin/test-ngs-vdb ../../../ilib/libtk-version.a ../../../ilib/libngs-vdb.a -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target test-ngs_csra1_pileup +[ 97%] Linking CXX executable ../../../test-bin/test-referenceblob +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-referenceblob.dir/link.txt --verbose=1 +[ 97%] Linking CXX executable ../../../test-bin/test-ngs-vdb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs-vdb.dir/link.txt --verbose=1 +[ 97%] Linking CXX executable ../../../test-bin/test-ngs_reference +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_reference.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs-vdb.dir/link.d "CMakeFiles/test-ngs-vdb.dir/test-ngs-vdb.cpp.o" -o ../../../test-bin/test-ngs-vdb ../../../ilib/libtk-version.a ../../../ilib/libngs-vdb.a -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target test-ngs-vdb +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-referenceblob.dir/link.d "CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o" -o ../../../test-bin/test-referenceblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 97%] Built target test-referenceblob +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_reference.dir/link.d "CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o" -o ../../../test-bin/test-ngs_reference -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 97%] Built target test-ngs_reference +[ 97%] Linking CXX executable ../../../test-bin/test-ngs_csra1_refwin +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_refwin.dir/link.txt --verbose=1 [ 97%] Linking CXX executable ../../../test-bin/test-ngs_sra_c++ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra_c++.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_refwin.dir/link.d "CMakeFiles/test-ngs_csra1_refwin.dir/ngstest_csra1_refwin.cpp.o" -o ../../../test-bin/test-ngs_csra1_refwin -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 97%] Built target test-ngs_csra1_refwin /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sra_c++.dir/link.d "CMakeFiles/test-ngs_sra_c++.dir/SRAtest.cpp.o" -o ../../../test-bin/test-ngs_sra_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target test-ngs_sra_c++ -[ 97%] Linking CXX executable ../../../test-bin/test-referenceblob -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-referenceblob.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-referenceblob.dir/link.d "CMakeFiles/test-referenceblob.dir/ngstest_referenceblob.cpp.o" -o ../../../test-bin/test-referenceblob -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +[ 98%] Linking CXX executable ../../../test-bin/test-ngs_csra1_readcollection +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_readcollection.dir/link.txt --verbose=1 +[ 98%] Built target test-ngs_sra_c++ +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_readcollection.dir/link.d "CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o" -o ../../../test-bin/test-ngs_csra1_readcollection -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 97%] Built target test-referenceblob +[ 98%] Built target test-ngs_csra1_readcollection +[ 98%] Linking CXX executable ../../../test-bin/test-ngs_sradb_c++ +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb_c++.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sradb_c++.dir/link.d "CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o" -o ../../../test-bin/test-ngs_sradb_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 98%] Built target test-ngs_sradb_c++ +[ 98%] Linking CXX executable ../../../test-bin/test-ngs_sradb +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb.dir/link.txt --verbose=1 +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sradb.dir/link.d "CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o" -o ../../../test-bin/test-ngs_sradb -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 98%] Built target test-ngs_sradb /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c: In function 'sqlite3VdbeExpandSql': /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77729:10: warning: function may return address of local variable [-Wreturn-local-addr] 77729 | return sqlite3StrAccumFinish(&out); @@ -7167,41 +7223,21 @@ /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/vdb-sqlite/sqlite3.c:77625:8: note: declared here -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_csra1_readcollection -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1_readcollection.dir/link.txt --verbose=1 -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_reference -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_reference.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1_readcollection.dir/link.d "CMakeFiles/test-ngs_csra1_readcollection.dir/ngstest_csra1_readcollection.cpp.o" -o ../../../test-bin/test-ngs_csra1_readcollection -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-ngs_csra1_readcollection -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_reference.dir/link.d "CMakeFiles/test-ngs_reference.dir/ngstest_reference.cpp.o" -o ../../../test-bin/test-ngs_reference -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-ngs_reference -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_sradb_c++ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb_c++.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sradb_c++.dir/link.d "CMakeFiles/test-ngs_sradb_c++.dir/SRADBtest.cpp.o" -o ../../../test-bin/test-ngs_sradb_c++ -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Linking CXX executable ../../../test-bin/test-ngs_sradb -[ 98%] Built target test-ngs_sradb_c++ -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sradb.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sradb.dir/link.d "CMakeFiles/test-ngs_sradb.dir/ngstest_sradb.cpp.o" -o ../../../test-bin/test-ngs_sradb -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-ngs_sradb [ 98%] Linking CXX executable ../../../test-bin/test-ngs_sra cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_sra.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_sra.dir/link.d "CMakeFiles/test-ngs_sra.dir/ngstest_sra.cpp.o" -o ../../../test-bin/test-ngs_sra -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target test-ngs_sra +[ 98%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastq_dflt [ 98%] Linking CXX executable ../../../test-bin/test-ngs_csra1 cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/libs/ngs-vdb/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-ngs_csra1.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1.dir/link.d "CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o" -o ../../../test-bin/test-ngs_csra1 -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a -make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target test-ngs_csra1 -[ 98%] Linking CXX executable ../../../test-bin/Test_FastqLoader_WbFastq_dflt cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/fastq-loader && /usr/bin/cmake -E cmake_link_script CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/link.d "CMakeFiles/Test_FastqLoader_WbFastq_dflt.dir/wb-test-fastq.cpp.o" -o ../../../test-bin/Test_FastqLoader_WbFastq_dflt ../../../ilib/libfastqloader.a ../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libktst.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +/usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-ngs_csra1.dir/link.d "CMakeFiles/test-ngs_csra1.dir/ngstest_csra1.cpp.o" -o ../../../test-bin/test-ngs_csra1 -Wl,-Bstatic -lktst -lkapp ../../../lib/libncbi-ngs.a -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a +make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target Test_FastqLoader_WbFastq_dflt +[ 98%] Built target test-ngs_csra1 [ 98%] Linking CXX executable ../../../../test-bin/test-general-loader cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/loaders/general-loader/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-general-loader.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test-general-loader.dir/link.d "CMakeFiles/test-general-loader.dir/test-general-loader.cpp.o" "CMakeFiles/test-general-loader.dir/testsource.cpp.o" -o ../../../../test-bin/test-general-loader ../../../../ilib/libgeneral-writer.a -lkapp -lktst ../../../../ilib/libloader.a /usr/lib/x86_64-linux-gnu/libncbi-wvdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto @@ -7276,14 +7312,14 @@ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sra-sort /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build +make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make -f test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build.make test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build make -f test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build.make test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build -make -f test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build.make test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build +make -f test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build.make test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build'. +make[3]: Nothing to be done for 'test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/external/fasterq-dump/CMakeFiles/Build-fasterq-dump.dir/build'. @@ -7292,12 +7328,12 @@ make[3]: Nothing to be done for 'test/external/sam-dump/CMakeFiles/Build-sam-dump.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'test/loaders/sra-sort/CMakeFiles/Build-sra-sort.dir/build'. +make[3]: Nothing to be done for 'test/loaders/bam-load/CMakeFiles/Build-bam-load.dir/build'. make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target Build-fasterq-dump +[ 99%] Built target Build-sra-sort [ 99%] Built target Build-sam-dump [ 99%] Built target Build-bam-load -[ 99%] Built target Build-sra-sort [ 99%] Linking CXX executable ../../../bin/sam-analyze cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/tools/test-tools/sam-analyze && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam-analyze.dir/link.txt --verbose=1 /usr/bin/c++ -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam-analyze.dir/link.d "CMakeFiles/sam-analyze.dir/main.cpp.o" "CMakeFiles/sam-analyze.dir/sqlite3.c.o" -o ../../../bin/sam-analyze /usr/lib/x86_64-linux-gnu/libkapp.a ../../../ilib/libtk-version.a /usr/lib/x86_64-linux-gnu/libncbi-vdb.so -lpthread -ldl -lm -lmbedx509 -lmbedtls -lmbedcrypto @@ -7323,19 +7359,19 @@ cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/sra-sdk-3.2.1+dfsg /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' -make -f test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build -make -f test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build make[3]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +make -f test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/build make -f test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/build +make -f test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build.make test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/build make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' +[ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o [ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -MF CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o.d -o CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-writer.cpp [ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o -[ 99%] Building CXX object test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o -MF CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o.d -o CMakeFiles/test-sharq-reader.dir/test-sharq-reader.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-reader.cpp cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o -MF CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o.d -o CMakeFiles/test-sharq-parser.dir/test-sharq-parser.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-parser.cpp +cd /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test/loaders/sharq && /usr/bin/c++ -DLINUX -DNDEBUG -DUNIX -D_ARCH_BITS=64 -D_GNU_SOURCE -Dx86_64 -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/cc/gcc -I/usr/include/ncbi-vdb/cc/gcc/x86_64 -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/ngs/ngs-sdk -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/lib/include -I/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq -Wall -g -O2 -ffile-prefix-map=/build/reproducible-path/sra-sdk-3.2.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fsigned-char -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -Wno-unused-function -std=c++17 -rdynamic -MD -MT test/loaders/sharq/CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -MF CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o.d -o CMakeFiles/test-sharq-writer.dir/test-sharq-writer.cpp.o -c /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/test-sharq-writer.cpp In file included from /build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/spdlog/fmt/fmt.h:27, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq/fastq_error.hpp:12, from /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/../../../tools/loaders/sharq/fastq_read.hpp:9, @@ -7654,7 +7690,7 @@ 9: !! 9: self.initialize_options() 9: zip_safe flag not set; analyzing archive contents... - 1/426 Test #9: Test_NGS_Python_install ................................ Passed 0.84 sec + 1/426 Test #9: Test_NGS_Python_install ................................ Passed 0.48 sec test 15 Start 15: Ngs_MakeDB @@ -7665,7 +7701,7 @@ 15: SparseFragmentBlobs (0 s) 15: 15: *** No errors detected (0 s total) - 2/426 Test #15: Ngs_MakeDB ............................................. Passed 0.12 sec + 2/426 Test #15: Ngs_MakeDB ............................................. Passed 0.25 sec test 16 Start 16: Test_Ngs @@ -7706,7 +7742,7 @@ 32: addTable correctly failed 32: endStream Success 32: --------------------------------- - 4/426 Test #32: Test_GeneralWriter_RoundTrip ........................... Passed 0.11 sec + 4/426 Test #32: Test_GeneralWriter_RoundTrip ........................... Passed 0.10 sec test 33 Start 33: GeneralLoaderWhiteBox @@ -7780,7 +7816,7 @@ 33: ProgressMessage (0 s) 33: TargetOverride (0 s) 33: -33: *** No errors detected (2 s total) +33: *** No errors detected (5 s total) 33: Packed protocol: Running 65 test cases... 33: EmptyInput (0 s) 33: ShortInput (0 s) @@ -7848,8 +7884,8 @@ 33: ProgressMessage (0 s) 33: TargetOverride (0 s) 33: -33: *** No errors detected (0 s total) - 5/426 Test #33: GeneralLoaderWhiteBox .................................. Passed 2.80 sec +33: *** No errors detected (6 s total) + 5/426 Test #33: GeneralLoaderWhiteBox .................................. Passed 12.45 sec test 34 Start 34: makeinputs @@ -7865,7 +7901,7 @@ 35: Test timeout computed to be: 1500 35: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1 0 35: running test case 0 -35: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +35: runtestcase.sh: line 56: test: too many arguments 35: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 7/426 Test #35: GeneralLoader-1.0-Basic-Unpacked ....................... Passed 0.00 sec test 36 @@ -7876,7 +7912,7 @@ 36: Test timeout computed to be: 1500 36: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1packed 0 36: running test case 0 -36: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +36: runtestcase.sh: line 56: test: too many arguments 36: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 8/426 Test #36: GeneralLoader-1.1-Basic-Packed ......................... Passed 0.00 sec test 37 @@ -7887,7 +7923,7 @@ 37: Test timeout computed to be: 1500 37: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1override 0 --target actual/1override/db 37: running test case 0 -37: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +37: runtestcase.sh: line 56: test: too many arguments 37: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 9/426 Test #37: GeneralLoader-1.2-TargetDbOverride ..................... Passed 0.00 sec test 38 @@ -7898,7 +7934,7 @@ 38: Test timeout computed to be: 1500 38: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 1override 0 -T actual/1override/db 38: running test case 0 -38: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +38: runtestcase.sh: line 56: test: too many arguments 38: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 10/426 Test #38: GeneralLoader-1.3-TargetDbOverrideShorthand ............ Passed 0.00 sec test 39 @@ -7909,7 +7945,7 @@ 39: Test timeout computed to be: 1500 39: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 2 3 -L=err 39: running test case 3 -39: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +39: runtestcase.sh: line 56: test: too many arguments 39: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 11/426 Test #39: GeneralLoader-2.0-ErrorMessageEvent-Unpacked ........... Passed 0.00 sec test 40 @@ -7920,7 +7956,7 @@ 40: Test timeout computed to be: 1500 40: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 2packed 3 -L=err 40: running test case 3 -40: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +40: runtestcase.sh: line 56: test: too many arguments 40: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 12/426 Test #40: GeneralLoader-2.1-ErrorMessageEvent-Packed ............. Passed 0.00 sec test 41 @@ -7931,7 +7967,7 @@ 41: Test timeout computed to be: 1500 41: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 3 0 41: running test case 0 -41: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +41: runtestcase.sh: line 56: test: too many arguments 41: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 13/426 Test #41: GeneralLoader-3.0-EmptyDefaultValues-Unpacked .......... Passed 0.00 sec test 42 @@ -7942,7 +7978,7 @@ 42: Test timeout computed to be: 1500 42: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 3 0 42: running test case 0 -42: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +42: runtestcase.sh: line 56: test: too many arguments 42: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 14/426 Test #42: GeneralLoader-3.1-EmptyDefaultValues-Packed ............ Passed 0.00 sec test 43 @@ -7953,7 +7989,7 @@ 43: Test timeout computed to be: 1500 43: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 4 0 43: running test case 0 -43: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +43: runtestcase.sh: line 56: test: too many arguments 43: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 15/426 Test #43: GeneralLoader-4.0-MoveAheadEvent-Unpacked .............. Passed 0.00 sec test 44 @@ -7964,7 +8000,7 @@ 44: Test timeout computed to be: 1500 44: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 4packed 0 44: running test case 0 -44: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +44: runtestcase.sh: line 56: test: too many arguments 44: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 16/426 Test #44: GeneralLoader-4.1-MoveAheadEvent-Packed ................ Passed 0.00 sec test 45 @@ -7975,7 +8011,7 @@ 45: Test timeout computed to be: 1500 45: runtestcase.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test 5packed 0 45: running test case 0 -45: runtestcase.sh: 56: test: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin: unexpected operator +45: runtestcase.sh: line 56: test: too many arguments 45: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump db/general-loader does not exist. Skipping the test. 17/426 Test #45: GeneralLoader-5.0-IntegerConversion .................... Passed 0.00 sec test 46 @@ -7989,7 +8025,7 @@ 46: cat input/6.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/load.stderr 46: Load succeeded, dumping and matching stdout 46: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta db SOFTWARE/formatter 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6/dump.stderr - 18/426 Test #46: GeneralLoader-6.0-SoftwareName-Unpacked ................ Passed 0.35 sec + 18/426 Test #46: GeneralLoader-6.0-SoftwareName-Unpacked ................ Passed 0.18 sec test 47 Start 47: GeneralLoader-6.1-SoftwareName-Packed @@ -8001,7 +8037,7 @@ 47: cat input/6packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/load.stderr 47: Load succeeded, dumping and matching stdout 47: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta db SOFTWARE/formatter 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/6packed/dump.stderr - 19/426 Test #47: GeneralLoader-6.1-SoftwareName-Packed .................. Passed 0.29 sec + 19/426 Test #47: GeneralLoader-6.1-SoftwareName-Packed .................. Passed 0.38 sec test 48 Start 48: GeneralLoader-7.0-MetadataAttrsDb-Unpacked @@ -8013,7 +8049,7 @@ 48: cat input/7.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/load.stderr 48: Load succeeded, dumping and matching stdout 48: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta db dbmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/7/dump.stderr - 20/426 Test #48: GeneralLoader-7.0-MetadataAttrsDb-Unpacked ............. Passed 0.23 sec + 20/426 Test #48: GeneralLoader-7.0-MetadataAttrsDb-Unpacked ............. Passed 0.22 sec test 49 Start 49: GeneralLoader-7.1-MetadataAttrsDb-Packed @@ -8037,7 +8073,7 @@ 50: cat input/8.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/load.stderr 50: Load succeeded, dumping and matching stdout 50: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE tblmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8/dump.stderr - 22/426 Test #50: GeneralLoader-8.0-MetadataAttrsTbl-Unpacked ............ Passed 0.27 sec + 22/426 Test #50: GeneralLoader-8.0-MetadataAttrsTbl-Unpacked ............ Passed 0.21 sec test 51 Start 51: GeneralLoader-8.1-MetadataAttrsTbl-Packed @@ -8049,7 +8085,7 @@ 51: cat input/8packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/load.stderr 51: Load succeeded, dumping and matching stdout 51: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE tblmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/8packed/dump.stderr - 23/426 Test #51: GeneralLoader-8.1-MetadataAttrsTbl-Packed .............. Passed 0.22 sec + 23/426 Test #51: GeneralLoader-8.1-MetadataAttrsTbl-Packed .............. Passed 0.25 sec test 52 Start 52: GeneralLoader-9.0-MetadataAttrsCol-Unpacked @@ -8061,7 +8097,7 @@ 52: cat input/9.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/load.stderr 52: Load succeeded, dumping and matching stdout 52: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS colmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9/dump.stderr - 24/426 Test #52: GeneralLoader-9.0-MetadataAttrsCol-Unpacked ............ Passed 0.20 sec + 24/426 Test #52: GeneralLoader-9.0-MetadataAttrsCol-Unpacked ............ Passed 0.21 sec test 53 Start 53: GeneralLoader-9.1-MetadataAttrsCol-Packed @@ -8073,14 +8109,14 @@ 53: cat input/9packed.gl | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -L=info 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/load.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/load.stderr 53: Load succeeded, dumping and matching stdout 53: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/kdbmeta db/tbl/REFERENCE/col/PRIMARY_ALIGNMENT_IDS colmeta 1>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/dump.stdout 2>/build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/actual/9packed/dump.stderr - 25/426 Test #53: GeneralLoader-9.1-MetadataAttrsCol-Packed .............. Passed 0.78 sec + 25/426 Test #53: GeneralLoader-9.1-MetadataAttrsCol-Packed .............. Passed 0.48 sec test 54 Start 54: bio-end-makeinputs 54: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test-bin/bio-end-makeinputs 54: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 54: Test timeout computed to be: 1500 - 26/426 Test #54: bio-end-makeinputs ..................................... Passed 0.02 sec + 26/426 Test #54: bio-end-makeinputs ..................................... Passed 0.00 sec test 55 Start 55: BioEnd-Excl-1 @@ -8096,7 +8132,7 @@ 56: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 56: Test timeout computed to be: 1500 56: running test bio-end:excl-2 - 28/426 Test #56: BioEnd-Excl-2 .......................................... Passed 0.14 sec + 28/426 Test #56: BioEnd-Excl-2 .......................................... Passed 0.15 sec test 57 Start 57: BioEnd-Excl-3 @@ -8112,7 +8148,7 @@ 58: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 58: Test timeout computed to be: 1500 58: running test bio-end:excl-4 - 30/426 Test #58: BioEnd-Excl-4 .......................................... Passed 0.14 sec + 30/426 Test #58: BioEnd-Excl-4 .......................................... Passed 0.15 sec test 59 Start 59: BioEnd-Incl-1 @@ -8120,7 +8156,7 @@ 59: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 59: Test timeout computed to be: 1500 59: running test bio-end:incl-1 - 31/426 Test #59: BioEnd-Incl-1 .......................................... Passed 0.50 sec + 31/426 Test #59: BioEnd-Incl-1 .......................................... Passed 0.22 sec test 60 Start 60: IdxText-CI-1 @@ -8128,14 +8164,14 @@ 60: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 60: Test timeout computed to be: 1500 60: running test bio-end:excl-1 - 32/426 Test #60: IdxText-CI-1 ........................................... Passed 0.14 sec + 32/426 Test #60: IdxText-CI-1 ........................................... Passed 0.24 sec test 61 Start 61: idx-text-makeinputs 61: Test command: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test-bin/idx-text-makeinputs 61: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 61: Test timeout computed to be: 1500 - 33/426 Test #61: idx-text-makeinputs .................................... Passed 0.04 sec + 33/426 Test #61: idx-text-makeinputs .................................... Passed 0.01 sec test 62 Start 62: IdxText-ci-1 @@ -8167,7 +8203,7 @@ 65: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 65: Test timeout computed to be: 1500 65: running test idx-text:ci-4 - 37/426 Test #65: IdxText-ci-4 ........................................... Passed 0.15 sec + 37/426 Test #65: IdxText-ci-4 ........................................... Passed 0.21 sec test 66 Start 66: IdxText-ci-5 @@ -8175,7 +8211,7 @@ 66: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 66: Test timeout computed to be: 1500 66: running test idx-text:ci-5 - 38/426 Test #66: IdxText-ci-5 ........................................... Passed 0.11 sec + 38/426 Test #66: IdxText-ci-5 ........................................... Passed 0.15 sec test 67 Start 67: IdxText-cs-1 @@ -8191,7 +8227,7 @@ 68: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 68: Test timeout computed to be: 1500 68: running test idx-text:cs-2 - 40/426 Test #68: IdxText-cs-2 ........................................... Passed 0.15 sec + 40/426 Test #68: IdxText-cs-2 ........................................... Passed 0.24 sec test 69 Start 69: IdxText-cs-3 @@ -8199,14 +8235,14 @@ 69: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/loaders/general-loader/test/vschema 69: Test timeout computed to be: 1500 69: running test idx-text:cs-3 - 41/426 Test #69: IdxText-cs-3 ........................................... Passed 0.11 sec + 41/426 Test #69: IdxText-cs-3 ........................................... Passed 0.10 sec test 70 Start 70: Ref-Variation-1.0 70: Test command: /usr/bin/sh "./have-access.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin" "ref-variation" 70: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/test 70: Test timeout computed to be: 1500 -70: ./have-access.sh: 6: vdb-config: not found +70: ./have-access.sh: line 6: vdb-config: command not found 70: no access to repository, skipping ref-variation test... 42/426 Test #70: Ref-Variation-1.0 ...................................... Passed 0.00 sec test 71 @@ -8215,7 +8251,7 @@ 71: Test command: /usr/bin/sh "./have-access.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin" "var-expand" 71: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/ref-variation/test 71: Test timeout computed to be: 1500 -71: ./have-access.sh: 6: vdb-config: not found +71: ./have-access.sh: line 6: vdb-config: command not found 71: no access to repository, skipping var-expand test... 43/426 Test #71: Var-Expand-1.0 ......................................... Passed 0.00 sec test 74 @@ -8235,7 +8271,7 @@ 74: SearchSmithWaterman_Coords_NotSupported (0 s) 74: 74: *** No errors detected (0 s total) - 44/426 Test #74: Test_SraSearch_SearchBlock ............................. Passed 0.01 sec + 44/426 Test #74: Test_SraSearch_SearchBlock ............................. Passed 0.00 sec test 75 Start 75: Test_SraSearchBlockWhiteBox @@ -8253,7 +8289,7 @@ 75: SearchSmithWaterman_Coords_NotSupported (0 s) 75: 75: *** No errors detected (0 s total) - 45/426 Test #75: Test_SraSearchBlockWhiteBox ............................ Passed 0.00 sec + 45/426 Test #75: Test_SraSearchBlockWhiteBox ............................ Passed 0.01 sec test 78 Start 78: Test_SraSearch-1.0-h @@ -8261,7 +8297,7 @@ 78: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 78: Test timeout computed to be: 1500 78: running test case 1.0-h... passed - 46/426 Test #78: Test_SraSearch-1.0-h ................................... Passed 0.09 sec + 46/426 Test #78: Test_SraSearch-1.0-h ................................... Passed 0.01 sec test 79 Start 79: Test_SraSearch-1.1-help @@ -8269,7 +8305,7 @@ 79: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 79: Test timeout computed to be: 1500 79: running test case 1.1-help... passed - 47/426 Test #79: Test_SraSearch-1.1-help ................................ Passed 0.13 sec + 47/426 Test #79: Test_SraSearch-1.1-help ................................ Passed 0.11 sec test 80 Start 80: Test_SraSearch-1.2-V @@ -8293,7 +8329,7 @@ 82: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 82: Test timeout computed to be: 1500 82: running test case 2.0-no-args... passed - 50/426 Test #82: Test_SraSearch-2.0-no-args ............................. Passed 0.33 sec + 50/426 Test #82: Test_SraSearch-2.0-no-args ............................. Passed 0.03 sec test 83 Start 83: Test_SraSearch-2.1-no-run @@ -8317,7 +8353,7 @@ 85: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 85: Test timeout computed to be: 1500 85: running test case 2.3-bad-algorithm... passed - 53/426 Test #85: Test_SraSearch-2.3-bad-algorithm ....................... Passed 0.02 sec + 53/426 Test #85: Test_SraSearch-2.3-bad-algorithm ....................... Passed 0.07 sec test 102 Start 102: Test_SraSearch-6.0.1-imperfect-match-no-arg @@ -8325,7 +8361,7 @@ 102: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 102: Test timeout computed to be: 1500 102: running test case 6.0.1-imperfect-match-no-arg... passed - 54/426 Test #102: Test_SraSearch-6.0.1-imperfect-match-no-arg ............ Passed 0.01 sec + 54/426 Test #102: Test_SraSearch-6.0.1-imperfect-match-no-arg ............ Passed 0.02 sec test 103 Start 103: Test_SraSearch-6.0.2-imperfect-match-bad-arg @@ -8333,7 +8369,7 @@ 103: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 103: Test timeout computed to be: 1500 103: running test case 6.0.2-imperfect-match-bad-arg... passed - 55/426 Test #103: Test_SraSearch-6.0.2-imperfect-match-bad-arg ........... Passed 0.01 sec + 55/426 Test #103: Test_SraSearch-6.0.2-imperfect-match-bad-arg ........... Passed 0.02 sec test 104 Start 104: Test_SraSearch-6.0.3-imperfect-match-default @@ -8341,7 +8377,7 @@ 104: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 104: Test timeout computed to be: 1500 104: running test case 6.0.3-imperfect-match-default... passed - 56/426 Test #104: Test_SraSearch-6.0.3-imperfect-match-default ........... Passed 0.01 sec + 56/426 Test #104: Test_SraSearch-6.0.3-imperfect-match-default ........... Passed 0.02 sec test 105 Start 105: Test_SraSearch-6.1-imperfect-match-fgrep-standard @@ -8349,7 +8385,7 @@ 105: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 105: Test timeout computed to be: 1500 105: running test case 6.1-imperfect-match-fgrep-standard... passed - 57/426 Test #105: Test_SraSearch-6.1-imperfect-match-fgrep-standard ...... Passed 0.01 sec + 57/426 Test #105: Test_SraSearch-6.1-imperfect-match-fgrep-standard ...... Passed 0.02 sec test 106 Start 106: Test_SraSearch-6.2-imperfect-match-fgrep-boyer-moore @@ -8365,7 +8401,7 @@ 107: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 107: Test timeout computed to be: 1500 107: running test case 6.3-imperfect-match-fgrep-aho... passed - 59/426 Test #107: Test_SraSearch-6.3-imperfect-match-fgrep-aho ........... Passed 0.01 sec + 59/426 Test #107: Test_SraSearch-6.3-imperfect-match-fgrep-aho ........... Passed 0.31 sec test 112 Start 112: SraSearch-6.8-imperfect-match-nucstrstr @@ -8397,7 +8433,7 @@ 120: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/tools/external/sra-search/test 120: Test timeout computed to be: 1500 120: running test case 8.0-nothing-found... passed - 63/426 Test #120: SlowTest_SraSearch-8.0-nothing-found ................... Passed 0.05 sec + 63/426 Test #120: SlowTest_SraSearch-8.0-nothing-found ................... Passed 0.09 sec test 124 Start 124: Test_SraSearch-9.3-reference-expression @@ -8493,7 +8529,6 @@ 140: 140: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.2.1 140: -140: /usr/bin/sh: 1: [: 3: unexpected operator 72/426 Test #140: PileupStats-NoArgs ..................................... Passed 0.01 sec test 141 Start 141: PileupStats-IgnoreArgs-L @@ -8525,7 +8560,6 @@ 141: 141: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.2.1 141: -141: /usr/bin/sh: 1: [: 3: unexpected operator 73/426 Test #141: PileupStats-IgnoreArgs-L ............................... Passed 0.01 sec test 142 Start 142: PileupStats-IgnoreArgs-z @@ -8557,7 +8591,6 @@ 142: 142: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.2.1 142: -142: /usr/bin/sh: 1: [: 3: unexpected operator 74/426 Test #142: PileupStats-IgnoreArgs-z ............................... Passed 0.01 sec test 143 Start 143: PileupStats-IgnoreArgs-loglevel @@ -8589,7 +8622,6 @@ 143: 143: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.2.1 143: -143: /usr/bin/sh: 1: [: 3: unexpected operator 75/426 Test #143: PileupStats-IgnoreArgs-loglevel ........................ Passed 0.01 sec test 144 Start 144: PileupStats-IgnoreArgs-xmllog @@ -8621,7 +8653,6 @@ 144: 144: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.2.1 144: -144: /usr/bin/sh: 1: [: 3: unexpected operator 76/426 Test #144: PileupStats-IgnoreArgs-xmllog .......................... Passed 0.01 sec test 145 Start 145: PileupStats-IgnoreArgs-xmllogfd @@ -8653,7 +8684,6 @@ 145: 145: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/pileup-stats : 3.2.1 145: -145: /usr/bin/sh: 1: [: 3: unexpected operator 77/426 Test #145: PileupStats-IgnoreArgs-xmllogfd ........................ Passed 0.01 sec test 147 Start 147: Test_VDB @@ -8708,7 +8738,7 @@ 147: RawData_value (0 s) 147: 147: *** No errors detected (1 s total) - 78/426 Test #147: Test_VDB ............................................... Passed 1.48 sec + 78/426 Test #147: Test_VDB ............................................... Passed 1.09 sec test 148 Start 148: Test_WVDB @@ -8720,7 +8750,7 @@ 148: ProductionSchema (0 s) 148: 148: *** No errors detected (0 s total) - 79/426 Test #148: Test_WVDB .............................................. Passed 0.87 sec + 79/426 Test #148: Test_WVDB .............................................. Passed 0.91 sec test 149 Start 149: Test_SraSchema_Unit @@ -8731,7 +8761,7 @@ 149: UseSraFunction (0 s) 149: 149: *** No errors detected (0 s total) - 80/426 Test #149: Test_SraSchema_Unit .................................... Passed 0.04 sec + 80/426 Test #149: Test_SraSchema_Unit .................................... Passed 0.05 sec test 150 Start 150: Test_SraSchema_454_db @@ -8741,7 +8771,7 @@ 150: VDB_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu 150: VDB_SRCDIR=/usr/include/ncbi-vdb/.. 150: Test timeout computed to be: 1500 - 81/426 Test #150: Test_SraSchema_454_db .................................. Passed 0.15 sec + 81/426 Test #150: Test_SraSchema_454_db .................................. Passed 0.17 sec test 151 Start 151: Test_SraSchema_IonTorrent_db @@ -8986,7 +9016,7 @@ 167: ParseArgs (0 s) 167: 167: *** No errors detected (0 s total) - 94/426 Test #167: Test_Drivertool_ToolArgs ............................... Passed 0.01 sec + 94/426 Test #167: Test_Drivertool_ToolArgs ............................... Passed 0.00 sec test 168 Start 168: Test_FasterqDump_Help @@ -9153,7 +9183,7 @@ 171: READ_ID1: 10 171: READ_ID2: 10 171: success testing read-id for --fasta-unsorted mode on flat table - 97/426 Test #171: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id ........ Passed 0.36 sec + 97/426 Test #171: Test_FasterDump_Fasta_unsorted_flat_tbl_read_id ........ Passed 0.19 sec test 172 Start 172: Test_FasterDump_Fasta_unsorted_cSRA_read_id @@ -9166,30 +9196,19 @@ 172: READ_ID1: 10 172: READ_ID2: 10 172: success testing read-id for --fasta-unsorted mode on cSRA table - 98/426 Test #172: Test_FasterDump_Fasta_unsorted_cSRA_read_id ............ Passed 0.73 sec + 98/426 Test #172: Test_FasterDump_Fasta_unsorted_cSRA_read_id ............ Passed 0.65 sec test 173 Start 173: Test_Tiny_cSRA 173: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump" "sh" "-c" "echo 'vdb/schema/paths = "/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/schema:/usr/include/ncbi-vdb"' > tmp.kfg; ./tiny_csra.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin" 173: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/fasterq-dump 173: Test timeout computed to be: 1500 -173: ./tiny_csra.sh: 17: [[: not found -173: ./tiny_csra.sh: 26: [[: not found -173: ./tiny_csra.sh: 32: [[: not found -173: ./tiny_csra.sh: 38: [[: not found -173: -e +173: 173: testing /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/fasterq-dump on tiny cSRA-accession -173: ./tiny_csra.sh: 46: [[: not found -173: ./tiny_csra.sh: 65: [[: not found -173: ./tiny_csra.sh: 70: [[: not found -173: ./tiny_csra.sh: 75: [[: not found -173: ./tiny_csra.sh: 86: [[: not found -173: ./tiny_csra.sh: 99: [[: not found 173: spots read : 3 173: reads read : 3 173: reads written : 3 -173: ./tiny_csra.sh: 111: [[: not found - 99/426 Test #173: Test_Tiny_cSRA ......................................... Passed 1.33 sec + 99/426 Test #173: Test_Tiny_cSRA ......................................... Passed 1.63 sec test 182 Start 182: Test_Prefetch_In_PATH @@ -9211,14 +9230,14 @@ 191: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump" "./verify_omit_qual.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin" 191: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump 191: Test timeout computed to be: 1500 -102/426 Test #191: Test_sam_dump_verify_omit .............................. Passed 1.42 sec +102/426 Test #191: Test_sam_dump_verify_omit .............................. Passed 1.11 sec test 192 Start 192: Test_sam_dump_star_quality 192: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump" "./print_star_on_missing_qual.sh" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin" 192: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/external/sam-dump 192: Test timeout computed to be: 1500 -103/426 Test #192: Test_sam_dump_star_quality ............................. Passed 1.02 sec +103/426 Test #192: Test_sam_dump_star_quality ............................. Passed 0.76 sec test 193 Start 193: Test_Srapath_Check_exit_code @@ -9235,7 +9254,7 @@ 195: Test timeout computed to be: 1500 195: WARNING[TEST1] help message is in 'STDOUT' 195: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-pileup] -105/426 Test #195: Test_SraPileup_Check_exit_code ......................... Passed 0.10 sec +105/426 Test #195: Test_SraPileup_Check_exit_code ......................... Passed 0.09 sec test 200 Start 200: Test_VDB_Config_model @@ -9259,7 +9278,7 @@ 200: 200: *** 1 failure detected in test suite "VdbConfStridesModelTestSuite" 200: VDB Copy model test is finished -106/426 Test #200: Test_VDB_Config_model .................................. Passed 0.23 sec +106/426 Test #200: Test_VDB_Config_model .................................. Passed 0.07 sec test 201 Start 201: Test_VDB_Config @@ -9268,7 +9287,7 @@ 201: Test timeout computed to be: 1500 201: Testing /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-config... 201: VDB config test is finished -107/426 Test #201: Test_VDB_Config ........................................ Passed 0.33 sec +107/426 Test #201: Test_VDB_Config ........................................ Passed 0.04 sec test 202 Start 202: Test_Vdb_dump_Check_exit_code @@ -9277,7 +9296,7 @@ 202: Test timeout computed to be: 1500 202: WARNING[TEST1] help message is in 'STDOUT' 202: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/vdb-dump] -108/426 Test #202: Test_Vdb_dump_Check_exit_code .......................... Passed 0.09 sec +108/426 Test #202: Test_Vdb_dump_Check_exit_code .......................... Passed 0.10 sec test 203 Start 203: Test_Vdb_dump_view-spec @@ -9308,7 +9327,7 @@ 203: NestedView (0 s) 203: 203: *** No errors detected (0 s total) -109/426 Test #203: Test_Vdb_dump_view-spec ................................ Passed 0.05 sec +109/426 Test #203: Test_Vdb_dump_view-spec ................................ Passed 0.06 sec test 206 Start 206: Test_VdbValidate_Unit @@ -9337,7 +9356,7 @@ 211: Test timeout computed to be: 1500 211: running 211: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info 1>./actual//stdout 2>./actual//stderr -112/426 Test #211: Test_Sra_Info_NoParam .................................. Passed 0.12 sec +112/426 Test #211: Test_Sra_Info_NoParam .................................. Passed 0.04 sec test 212 Start 212: Test_Sra_Info_MultipleParams @@ -9373,7 +9392,7 @@ 221: Test timeout computed to be: 9000 221: running 4.1 221: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f csv 1>./actual/4.1/stdout 2>./actual/4.1/stderr -116/426 Test #221: Test_Sra_Info_Platform_Format_CSV ...................... Passed 0.28 sec +116/426 Test #221: Test_Sra_Info_Platform_Format_CSV ...................... Passed 0.17 sec test 222 Start 222: Test_Sra_Info_Platform_Format_XML @@ -9382,7 +9401,7 @@ 222: Test timeout computed to be: 9000 222: running 4.2 222: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f xml 1>./actual/4.2/stdout 2>./actual/4.2/stderr -117/426 Test #222: Test_Sra_Info_Platform_Format_XML ...................... Passed 0.40 sec +117/426 Test #222: Test_Sra_Info_Platform_Format_XML ...................... Passed 0.16 sec test 223 Start 223: Test_Sra_Info_Platform_Format_Json @@ -9391,7 +9410,7 @@ 223: Test timeout computed to be: 9000 223: running 4.3 223: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f json 1>./actual/4.3/stdout 2>./actual/4.3/stderr -118/426 Test #223: Test_Sra_Info_Platform_Format_Json ..................... Passed 0.48 sec +118/426 Test #223: Test_Sra_Info_Platform_Format_Json ..................... Passed 0.16 sec test 224 Start 224: Test_Sra_Info_Platform_Format_Tab @@ -9400,7 +9419,7 @@ 224: Test timeout computed to be: 9000 224: running 4.4 224: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info -P ./input/MultiPlatform.sra -f tab 1>./actual/4.4/stdout 2>./actual/4.4/stderr -119/426 Test #224: Test_Sra_Info_Platform_Format_Tab ...................... Passed 0.28 sec +119/426 Test #224: Test_Sra_Info_Platform_Format_Tab ...................... Passed 0.16 sec test 227 Start 227: Test_Sra_Info_Quality_Physical @@ -9409,7 +9428,7 @@ 227: Test timeout computed to be: 9000 227: running 6.1 227: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info --quality ./input/MultiPlatform.sra 1>./actual/6.1/stdout 2>./actual/6.1/stderr -120/426 Test #227: Test_Sra_Info_Quality_Physical ......................... Passed 0.18 sec +120/426 Test #227: Test_Sra_Info_Quality_Physical ......................... Passed 0.16 sec test 242 Start 242: Test_Sra_Info_Schema_Default @@ -9418,7 +9437,7 @@ 242: Test timeout computed to be: 9000 242: running 9.0 242: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra 1>./actual/9.0/stdout 2>./actual/9.0/stderr -121/426 Test #242: Test_Sra_Info_Schema_Default ........................... Passed 0.26 sec +121/426 Test #242: Test_Sra_Info_Schema_Default ........................... Passed 0.13 sec test 243 Start 243: Test_Sra_Info_Schema_Json @@ -9427,7 +9446,7 @@ 243: Test timeout computed to be: 9000 243: running 9.1 243: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fjson 1>./actual/9.1/stdout 2>./actual/9.1/stderr -122/426 Test #243: Test_Sra_Info_Schema_Json .............................. Passed 0.31 sec +122/426 Test #243: Test_Sra_Info_Schema_Json .............................. Passed 0.13 sec test 244 Start 244: Test_Sra_Info_Schema_Xml @@ -9436,7 +9455,7 @@ 244: Test timeout computed to be: 9000 244: running 9.2 244: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info --schema input/MultiPlatform.sra -fxml 1>./actual/9.2/stdout 2>./actual/9.2/stderr -123/426 Test #244: Test_Sra_Info_Schema_Xml ............................... Passed 0.19 sec +123/426 Test #244: Test_Sra_Info_Schema_Xml ............................... Passed 0.13 sec test 245 Start 245: Test_Sra_Info_ACPQS_Default @@ -9445,7 +9464,7 @@ 245: Test timeout computed to be: 9000 245: running 10.0 245: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS 1>./actual/10.0/stdout 2>./actual/10.0/stderr -124/426 Test #245: Test_Sra_Info_ACPQS_Default ............................ Passed 0.57 sec +124/426 Test #245: Test_Sra_Info_ACPQS_Default ............................ Passed 0.20 sec test 246 Start 246: Test_Sra_Info_ACPQS_Json @@ -9463,7 +9482,7 @@ 247: Test timeout computed to be: 9000 247: running 10.2 247: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sra-info input/MultiPlatform.sra -ACPQS -fxml 1>./actual/10.2/stdout 2>./actual/10.2/stderr -126/426 Test #247: Test_Sra_Info_ACPQS_Xml ................................ Passed 0.21 sec +126/426 Test #247: Test_Sra_Info_ACPQS_Xml ................................ Passed 0.26 sec test 257 Start 257: BamTestSetup @@ -9478,14 +9497,14 @@ 258: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/bam-load -o out.sra test.sam" 258: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 258: Test timeout computed to be: 1500 -128/426 Test #258: Test_BamLoader_1 ....................................... Passed 0.27 sec +128/426 Test #258: Test_BamLoader_1 ....................................... Passed 0.51 sec test 259 Start 259: Test_BamLoader_MinBatchSize 259: Test command: /usr/bin/cmake "-E" "env" "NCBI_SETTINGS=/" "/usr/bin/cmake" "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/bam-load -o out.sra --min-batch-size 999999 test.sam" 259: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/bam-load 259: Test timeout computed to be: 1500 -129/426 Test #259: Test_BamLoader_MinBatchSize ............................ Passed 0.28 sec +129/426 Test #259: Test_BamLoader_MinBatchSize ............................ Passed 0.54 sec test 260 Start 260: Test_BamLoader_MinBatchSize_Bad @@ -9505,8 +9524,8 @@ 260: 260: Use option --help for more information. 260: -260: 2026-09-05T20:22:34 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed -130/426 Test #260: Test_BamLoader_MinBatchSize_Bad ........................ Passed 0.04 sec +260: 2025-08-03T14:08:56 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed +130/426 Test #260: Test_BamLoader_MinBatchSize_Bad ........................ Passed 0.03 sec test 261 Start 261: Test_BamLoader_FewerThan3Threads @@ -9526,8 +9545,8 @@ 261: 261: Use option --help for more information. 261: -261: 2026-09-05T20:22:34 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed -131/426 Test #261: Test_BamLoader_FewerThan3Threads ....................... Passed 0.04 sec +261: 2025-08-03T14:08:56 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed +131/426 Test #261: Test_BamLoader_FewerThan3Threads ....................... Passed 0.03 sec test 262 Start 262: Test_BamLoader_ThreadsBad @@ -9547,8 +9566,8 @@ 262: 262: Use option --help for more information. 262: -262: 2026-09-05T20:22:34 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed -132/426 Test #262: Test_BamLoader_ThreadsBad .............................. Passed 0.04 sec +262: 2025-08-03T14:08:56 bam-load.3.2.1 err: param incorrect while accessing argument list within application support module - load failed +132/426 Test #262: Test_BamLoader_ThreadsBad .............................. Passed 0.03 sec test 263 Start 263: Test_BamLoader_platform @@ -9698,7 +9717,7 @@ 266: FastqMultiLineSequenceFastq (0 s) 266: 266: *** No errors detected (0 s total) -136/426 Test #266: Test_FastqLoader_WbFastq_dflt .......................... Passed 0.05 sec +136/426 Test #266: Test_FastqLoader_WbFastq_dflt .......................... Passed 0.04 sec test 267 Start 267: Test_FastqLoader_WbFastqParse @@ -9737,29 +9756,29 @@ 268: Test timeout computed to be: 1500 268: Running 14 test cases... 268: CommonWriterOneFile (0 s) -268: 2026-09-05T20:22:34 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' +268: 2025-08-03T14:08:57 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' 268: CommonWriterDuplicateReadnames_Error (0 s) -268: 2026-09-05T20:22:34 Test_FastqLoader_WbFastqLoader.1.0.0 warn: Spot 'HWUSI-EAS499:1:3:9:1822' has already been assigned a spot id +268: 2025-08-03T14:08:57 Test_FastqLoader_WbFastqLoader.1.0.0 warn: Spot 'HWUSI-EAS499:1:3:9:1822' has already been assigned a spot id 268: CommonWriterDuplicateReadnames_Allowed (0 s) -268: 2026-09-05T20:22:35 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' +268: 2025-08-03T14:08:57 Test_FastqLoader_WbFastqLoader.1.0.0 err: data inconsistent while reading file within application support module - Duplicate read name 'HWUSI-EAS499:1:3:9:1822' 268: CommonWriterDuplicateReadnames_SameFragment (0 s) 268: CommonWriterDuplicateReadnames_DiffFragment (0 s) -268: 2026-09-05T20:22:35 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen with mate info, now has no mate info -268: 2026-09-05T20:22:35 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 +268: 2025-08-03T14:08:58 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen with mate info, now has no mate info +268: 2025-08-03T14:08:58 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 268: CommonWriterDuplicateReadnames_MatedThenUnmated (0 s) -268: 2026-09-05T20:22:35 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen without mate info, now has mate info -268: 2026-09-05T20:22:35 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 +268: 2025-08-03T14:08:58 Test_FastqLoader_WbFastqLoader.1.0.0 warn: data inconsistent while reading file within application support module - Spot 'HWUSI-EAS499:1:3:9:1822', which was first seen without mate info, now has mate info +268: 2025-08-03T14:08:58 Test_FastqLoader_WbFastqLoader.1.0.0 err: data invalid while closing table - Too many bad records: records: 2, bad records: 1, bad records percentage: 0.50, allowed percentage: 0.00 268: CommonWriterDuplicateReadnames_UnmatedThenMated (0 s) 268: NoSpotAssemply (0 s) 268: NoSpotAssemply_case2 (0 s) -268: Interleaved_OneRead (0 s) +268: Interleaved_OneRead (1 s) 268: Interleaved_MultipleReads (0 s) 268: Interleaved_NoMatch (0 s) 268: Interleaved_1_longer (0 s) 268: Interleaved_2_longer (0 s) 268: -268: *** No errors detected (1 s total) -138/426 Test #268: Test_FastqLoader_WbFastqLoader ......................... Passed 1.96 sec +268: *** No errors detected (4 s total) +138/426 Test #268: Test_FastqLoader_WbFastqLoader ......................... Passed 4.46 sec test 269 Start 269: Test_FastqLoader_1.1 @@ -9768,7 +9787,7 @@ 269: Test timeout computed to be: 1500 269: running 1.1 269: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.1.fastq --quality PHRED_33 -o ./actual/1.1/obj 1>./actual/1.1/load.stdout 2>./actual/1.1/load.stderr -139/426 Test #269: Test_FastqLoader_1.1 ................................... Passed 0.69 sec +139/426 Test #269: Test_FastqLoader_1.1 ................................... Passed 0.44 sec test 270 Start 270: Test_FastqLoader_1.2 @@ -9777,7 +9796,7 @@ 270: Test timeout computed to be: 1500 270: running 1.2 270: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.2.fastq --quality PHRED_64 -o ./actual/1.2/obj 1>./actual/1.2/load.stdout 2>./actual/1.2/load.stderr -140/426 Test #270: Test_FastqLoader_1.2 ................................... Passed 1.26 sec +140/426 Test #270: Test_FastqLoader_1.2 ................................... Passed 0.37 sec test 271 Start 271: Test_FastqLoader_1.3 @@ -9795,7 +9814,7 @@ 272: Test timeout computed to be: 1500 272: running 1.4 272: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/1.4.fastq --quality LOGODDS -o ./actual/1.4/obj 1>./actual/1.4/load.stdout 2>./actual/1.4/load.stderr -142/426 Test #272: Test_FastqLoader_1.4 ................................... Passed 0.39 sec +142/426 Test #272: Test_FastqLoader_1.4 ................................... Passed 0.38 sec test 273 Start 273: Test_FastqLoader_2.1 @@ -9804,7 +9823,7 @@ 273: Test timeout computed to be: 1500 273: running 2.1 273: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.1.fastq --quality PHRED_33 -o ./actual/2.1/obj 1>./actual/2.1/load.stdout 2>./actual/2.1/load.stderr -143/426 Test #273: Test_FastqLoader_2.1 ................................... Passed 0.38 sec +143/426 Test #273: Test_FastqLoader_2.1 ................................... Passed 0.37 sec test 274 Start 274: Test_FastqLoader_2.5 @@ -9813,7 +9832,7 @@ 274: Test timeout computed to be: 1500 274: running 2.5 274: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.5.fastq --quality PHRED_33 -o ./actual/2.5/obj 1>./actual/2.5/load.stdout 2>./actual/2.5/load.stderr -144/426 Test #274: Test_FastqLoader_2.5 ................................... Passed 0.49 sec +144/426 Test #274: Test_FastqLoader_2.5 ................................... Passed 0.37 sec test 275 Start 275: Test_FastqLoader_2.6 @@ -9822,7 +9841,7 @@ 275: Test timeout computed to be: 1500 275: running 2.6 275: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.6.fastq --quality PHRED_33 -o ./actual/2.6/obj 1>./actual/2.6/load.stdout 2>./actual/2.6/load.stderr -145/426 Test #275: Test_FastqLoader_2.6 ................................... Passed 0.47 sec +145/426 Test #275: Test_FastqLoader_2.6 ................................... Passed 0.38 sec test 276 Start 276: Test_FastqLoader_2.7 @@ -9831,7 +9850,7 @@ 276: Test timeout computed to be: 1500 276: running 2.7 276: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.7.fastq --quality PHRED_33 -o ./actual/2.7/obj 1>./actual/2.7/load.stdout 2>./actual/2.7/load.stderr -146/426 Test #276: Test_FastqLoader_2.7 ................................... Passed 0.26 sec +146/426 Test #276: Test_FastqLoader_2.7 ................................... Passed 0.21 sec test 277 Start 277: Test_FastqLoader_2.7.1 @@ -9840,7 +9859,7 @@ 277: Test timeout computed to be: 1500 277: running 2.7.1 277: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/2.7.fastq --quality PHRED_33 --allow_duplicates -o ./actual/2.7.1/obj 1>./actual/2.7.1/load.stdout 2>./actual/2.7.1/load.stderr -147/426 Test #277: Test_FastqLoader_2.7.1 ................................. Passed 0.38 sec +147/426 Test #277: Test_FastqLoader_2.7.1 ................................. Passed 0.37 sec test 278 Start 278: Test_FastqLoader_2.8.1 @@ -9849,7 +9868,7 @@ 278: Test timeout computed to be: 1500 278: running 2.8.1 278: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.8.1.fastq --quality PHRED_33 -o ./actual/2.8.1/obj 1>./actual/2.8.1/load.stdout 2>./actual/2.8.1/load.stderr -148/426 Test #278: Test_FastqLoader_2.8.1 ................................. Passed 0.40 sec +148/426 Test #278: Test_FastqLoader_2.8.1 ................................. Passed 0.39 sec test 279 Start 279: Test_FastqLoader_2.9 @@ -9858,7 +9877,7 @@ 279: Test timeout computed to be: 1500 279: running 2.9 279: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.9.fastq --quality PHRED_33 -o ./actual/2.9/obj 1>./actual/2.9/load.stdout 2>./actual/2.9/load.stderr -149/426 Test #279: Test_FastqLoader_2.9 ................................... Passed 0.32 sec +149/426 Test #279: Test_FastqLoader_2.9 ................................... Passed 0.18 sec test 280 Start 280: Test_FastqLoader_2.9.1 @@ -9867,7 +9886,7 @@ 280: Test timeout computed to be: 1500 280: running 2.9.1 280: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/2.9.1.fastq --quality PHRED_33 -o ./actual/2.9.1/obj 1>./actual/2.9.1/load.stdout 2>./actual/2.9.1/load.stderr -150/426 Test #280: Test_FastqLoader_2.9.1 ................................. Passed 0.18 sec +150/426 Test #280: Test_FastqLoader_2.9.1 ................................. Passed 0.21 sec test 281 Start 281: Test_FastqLoader_3.1 @@ -9876,15 +9895,15 @@ 281: Test timeout computed to be: 1500 281: running 3.1 281: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/3.1a.fastq input/3.1b.fastq --quality PHRED_33 -o ./actual/3.1/obj 1>./actual/3.1/load.stdout 2>./actual/3.1/load.stderr -151/426 Test #281: Test_FastqLoader_3.1 ................................... Passed 0.39 sec +151/426 Test #281: Test_FastqLoader_3.1 ................................... Passed 0.37 sec test 282 Start 282: Test_FastqLoader_4.1 282: Test command: /usr/bin/cmake "-E" "env" "VDB_CONFIG=/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader" "sh" "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load ./input/4.fastq --tmpfs ./actual -v -o actual/4.1.obj --quality PHRED_33 2>&1 | grep "Path for scratch files: ./actual/key2id"" 282: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader 282: Test timeout computed to be: 1500 -282: 2026-09-05T20:22:42 latf-load.3.2.1: Path for scratch files: ./actual/key2id.3694340.1 -152/426 Test #282: Test_FastqLoader_4.1 ................................... Passed 0.20 sec +282: 2025-08-03T14:09:05 latf-load.3.2.1: Path for scratch files: ./actual/key2id.2049689.1 +152/426 Test #282: Test_FastqLoader_4.1 ................................... Passed 0.19 sec test 283 Start 283: Test_FastqLoader_4.2 @@ -9893,7 +9912,7 @@ 283: Test timeout computed to be: 1500 283: running 4.2 283: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.fastq --qual-quant 1:10,10:20,20:30,30:- --quality PHRED_33 -o ./actual/4.2/obj 1>./actual/4.2/load.stdout 2>./actual/4.2/load.stderr -153/426 Test #283: Test_FastqLoader_4.2 ................................... Passed 0.39 sec +153/426 Test #283: Test_FastqLoader_4.2 ................................... Passed 0.36 sec test 284 Start 284: Test_FastqLoader_4.3.1 @@ -9911,7 +9930,7 @@ 285: Test timeout computed to be: 1500 285: running 4.5 285: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/4.5.fastq --max-err-count 2 --quality PHRED_33 -o ./actual/4.5/obj 1>./actual/4.5/load.stdout 2>./actual/4.5/load.stderr -155/426 Test #285: Test_FastqLoader_4.5 ................................... Passed 0.21 sec +155/426 Test #285: Test_FastqLoader_4.5 ................................... Passed 0.18 sec test 286 Start 286: Test_FastqLoader_4.5.2 @@ -9920,7 +9939,7 @@ 286: Test timeout computed to be: 1500 286: running 4.5.2 286: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/4.5.2.fastq --platform ILLUMINA --quality PHRED_33 --max-err-count 2 -o ./actual/4.5.2/obj 1>./actual/4.5.2/load.stdout 2>./actual/4.5.2/load.stderr -156/426 Test #286: Test_FastqLoader_4.5.2 ................................. Passed 0.29 sec +156/426 Test #286: Test_FastqLoader_4.5.2 ................................. Passed 0.22 sec test 287 Start 287: Test_FastqLoader_4.6 @@ -9929,7 +9948,7 @@ 287: Test timeout computed to be: 1500 287: running 4.6 287: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.fastq -p LS454 --quality PHRED_33 -o ./actual/4.6/obj 1>./actual/4.6/load.stdout 2>./actual/4.6/load.stderr -157/426 Test #287: Test_FastqLoader_4.6 ................................... Passed 0.47 sec +157/426 Test #287: Test_FastqLoader_4.6 ................................... Passed 0.36 sec test 288 Start 288: Test_FastqLoader_4.6.1 @@ -9938,7 +9957,7 @@ 288: Test timeout computed to be: 1500 288: running 4.6.1 288: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.fastq -p SOMETHINGELSE --quality PHRED_33 -o ./actual/4.6.1/obj 1>./actual/4.6.1/load.stdout 2>./actual/4.6.1/load.stderr -158/426 Test #288: Test_FastqLoader_4.6.1 ................................. Passed 0.16 sec +158/426 Test #288: Test_FastqLoader_4.6.1 ................................. Passed 0.05 sec test 289 Start 289: Test_FastqLoader_4.7 @@ -9947,7 +9966,7 @@ 289: Test timeout computed to be: 1500 289: running 4.7 289: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/not_there --quality PHRED_33 -o ./actual/4.7/obj 1>./actual/4.7/load.stdout 2>./actual/4.7/load.stderr -159/426 Test #289: Test_FastqLoader_4.7 ................................... Passed 0.24 sec +159/426 Test #289: Test_FastqLoader_4.7 ................................... Passed 0.35 sec test 290 Start 290: Test_FastqLoader_4.8 @@ -9956,7 +9975,7 @@ 290: Test timeout computed to be: 1500 290: running 4.8 290: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/4.8.fastq --quality PHRED_33 --no-readnames -o ./actual/4.8/obj 1>./actual/4.8/load.stdout 2>./actual/4.8/load.stderr -160/426 Test #290: Test_FastqLoader_4.8 ................................... Passed 0.38 sec +160/426 Test #290: Test_FastqLoader_4.8 ................................... Passed 0.37 sec test 291 Start 291: Test_FastqLoader_5.0 @@ -9965,7 +9984,7 @@ 291: Test timeout computed to be: 1500 291: running 5.0 291: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/5.0.fastq.gz --quality PHRED_33 -o ./actual/5.0/obj 1>./actual/5.0/load.stdout 2>./actual/5.0/load.stderr -161/426 Test #291: Test_FastqLoader_5.0 ................................... Passed 0.40 sec +161/426 Test #291: Test_FastqLoader_5.0 ................................... Passed 0.55 sec test 292 Start 292: Test_FastqLoader_6.0 @@ -9974,7 +9993,7 @@ 292: Test timeout computed to be: 1500 292: running 6.0 292: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/6.0.fastq --quality PHRED_33 -o ./actual/6.0/obj 1>./actual/6.0/load.stdout 2>./actual/6.0/load.stderr -162/426 Test #292: Test_FastqLoader_6.0 ................................... Passed 0.46 sec +162/426 Test #292: Test_FastqLoader_6.0 ................................... Passed 0.37 sec test 293 Start 293: Test_FastqLoader_7.1 @@ -9983,7 +10002,7 @@ 293: Test timeout computed to be: 1500 293: running 7.1 293: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.1.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.1/obj 1>./actual/7.1/load.stdout 2>./actual/7.1/load.stderr -163/426 Test #293: Test_FastqLoader_7.1 ................................... Passed 0.69 sec +163/426 Test #293: Test_FastqLoader_7.1 ................................... Passed 0.37 sec test 294 Start 294: Test_FastqLoader_7.2 @@ -9992,7 +10011,7 @@ 294: Test timeout computed to be: 1500 294: running 7.2 294: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.2.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.2/obj 1>./actual/7.2/load.stdout 2>./actual/7.2/load.stderr -164/426 Test #294: Test_FastqLoader_7.2 ................................... Passed 0.42 sec +164/426 Test #294: Test_FastqLoader_7.2 ................................... Passed 0.38 sec test 295 Start 295: Test_FastqLoader_7.3 @@ -10001,7 +10020,7 @@ 295: Test timeout computed to be: 1500 295: running 7.3 295: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/7.3.fastq --platform=PACBIO --quality PHRED_33 -o ./actual/7.3/obj 1>./actual/7.3/load.stdout 2>./actual/7.3/load.stderr -165/426 Test #295: Test_FastqLoader_7.3 ................................... Passed 0.49 sec +165/426 Test #295: Test_FastqLoader_7.3 ................................... Passed 0.37 sec test 296 Start 296: Test_FastqLoader_8.0 @@ -10010,7 +10029,7 @@ 296: Test timeout computed to be: 1500 296: running 8.0 296: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/8.0.fastq --quality PHRED_33 -o ./actual/8.0/obj 1>./actual/8.0/load.stdout 2>./actual/8.0/load.stderr -166/426 Test #296: Test_FastqLoader_8.0 ................................... Passed 1.05 sec +166/426 Test #296: Test_FastqLoader_8.0 ................................... Passed 0.36 sec test 297 Start 297: Test_FastqLoader_8.1 @@ -10019,7 +10038,7 @@ 297: Test timeout computed to be: 1500 297: running 8.1 297: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/8.1.fastq --quality PHRED_33 -o ./actual/8.1/obj 1>./actual/8.1/load.stdout 2>./actual/8.1/load.stderr -167/426 Test #297: Test_FastqLoader_8.1 ................................... Passed 0.70 sec +167/426 Test #297: Test_FastqLoader_8.1 ................................... Passed 0.18 sec test 298 Start 298: Test_FastqLoader_9.0 @@ -10028,7 +10047,7 @@ 298: Test timeout computed to be: 1500 298: running 9.0 298: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/9.0.fastq --quality PHRED_33 -o ./actual/9.0/obj 1>./actual/9.0/load.stdout 2>./actual/9.0/load.stderr -168/426 Test #298: Test_FastqLoader_9.0 ................................... Passed 0.94 sec +168/426 Test #298: Test_FastqLoader_9.0 ................................... Passed 0.56 sec test 299 Start 299: Test_FastqLoader_10.0 @@ -10037,7 +10056,7 @@ 299: Test timeout computed to be: 1500 299: running 10.0 299: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/10.0.fastq --quality PHRED_33 -o ./actual/10.0/obj 1>./actual/10.0/load.stdout 2>./actual/10.0/load.stderr -169/426 Test #299: Test_FastqLoader_10.0 .................................. Passed 0.39 sec +169/426 Test #299: Test_FastqLoader_10.0 .................................. Passed 0.37 sec test 300 Start 300: Test_FastqLoader_11.0 @@ -10046,7 +10065,7 @@ 300: Test timeout computed to be: 1500 300: running 11.0 300: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/11.0.1.fasta input/11.0.2.fasta --quality PHRED_33 -o ./actual/11.0/obj 1>./actual/11.0/load.stdout 2>./actual/11.0/load.stderr -170/426 Test #300: Test_FastqLoader_11.0 .................................. Passed 0.41 sec +170/426 Test #300: Test_FastqLoader_11.0 .................................. Passed 0.37 sec test 301 Start 301: Test_FastqLoader_11.1 @@ -10055,7 +10074,7 @@ 301: Test timeout computed to be: 1500 301: running 11.1 301: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/11.1.1.fastq input/11.1.2.fastq --quality PHRED_33 -o ./actual/11.1/obj 1>./actual/11.1/load.stdout 2>./actual/11.1/load.stderr -171/426 Test #301: Test_FastqLoader_11.1 .................................. Passed 0.47 sec +171/426 Test #301: Test_FastqLoader_11.1 .................................. Passed 0.66 sec test 302 Start 302: Test_FastqLoader_12.0 @@ -10064,7 +10083,7 @@ 302: Test timeout computed to be: 1500 302: running 12.0 302: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.0.fastq --quality PHRED_33 --ignore-illumina-tags -o ./actual/12.0/obj 1>./actual/12.0/load.stdout 2>./actual/12.0/load.stderr -172/426 Test #302: Test_FastqLoader_12.0 .................................. Passed 0.42 sec +172/426 Test #302: Test_FastqLoader_12.0 .................................. Passed 0.71 sec test 303 Start 303: Test_FastqLoader_12.1 @@ -10073,7 +10092,7 @@ 303: Test timeout computed to be: 1500 303: running 12.1 303: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.1.fastq --quality PHRED_33 -o ./actual/12.1/obj 1>./actual/12.1/load.stdout 2>./actual/12.1/load.stderr -173/426 Test #303: Test_FastqLoader_12.1 .................................. Passed 0.40 sec +173/426 Test #303: Test_FastqLoader_12.1 .................................. Passed 0.43 sec test 304 Start 304: Test_FastqLoader_12.2 @@ -10082,7 +10101,7 @@ 304: Test timeout computed to be: 1500 304: running 12.2 304: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/12.2.fastq --quality PHRED_33 -o ./actual/12.2/obj 1>./actual/12.2/load.stdout 2>./actual/12.2/load.stderr -174/426 Test #304: Test_FastqLoader_12.2 .................................. Passed 0.46 sec +174/426 Test #304: Test_FastqLoader_12.2 .................................. Passed 1.02 sec test 305 Start 305: Test_FastqLoader_13.0 @@ -10091,7 +10110,7 @@ 305: Test timeout computed to be: 1500 305: running 13.0 305: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/13.0.fastq --quality PHRED_33 -o ./actual/13.0/obj 1>./actual/13.0/load.stdout 2>./actual/13.0/load.stderr -175/426 Test #305: Test_FastqLoader_13.0 .................................. Passed 0.65 sec +175/426 Test #305: Test_FastqLoader_13.0 .................................. Passed 0.41 sec test 306 Start 306: Test_FastqLoader_13.1 @@ -10100,7 +10119,7 @@ 306: Test timeout computed to be: 1500 306: running 13.1 306: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/13.1.fastq --quality PHRED_33 -o ./actual/13.1/obj 1>./actual/13.1/load.stdout 2>./actual/13.1/load.stderr -176/426 Test #306: Test_FastqLoader_13.1 .................................. Passed 0.43 sec +176/426 Test #306: Test_FastqLoader_13.1 .................................. Passed 0.72 sec test 307 Start 307: Test_FastqLoader_14.0 @@ -10109,7 +10128,7 @@ 307: Test timeout computed to be: 1500 307: running 14.0 307: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/14.0.fasta --quality PHRED_33 -o ./actual/14.0/obj 1>./actual/14.0/load.stdout 2>./actual/14.0/load.stderr -177/426 Test #307: Test_FastqLoader_14.0 .................................. Passed 0.39 sec +177/426 Test #307: Test_FastqLoader_14.0 .................................. Passed 0.94 sec test 308 Start 308: Test_FastqLoader_15.0 @@ -10118,7 +10137,7 @@ 308: Test timeout computed to be: 1500 308: running 15.0 308: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load ./input/15.0.fastq --quality PHRED_33 -o ./actual/15.0/obj 1>./actual/15.0/load.stdout 2>./actual/15.0/load.stderr -178/426 Test #308: Test_FastqLoader_15.0 .................................. Passed 0.49 sec +178/426 Test #308: Test_FastqLoader_15.0 .................................. Passed 1.17 sec test 309 Start 309: Test_FastqLoader_16.0 @@ -10127,7 +10146,7 @@ 309: Test timeout computed to be: 1500 309: running 16.0 309: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/16.0.fasta --quality PHRED_33 --platform=PACBIO -o ./actual/16.0/obj 1>./actual/16.0/load.stdout 2>./actual/16.0/load.stderr -179/426 Test #309: Test_FastqLoader_16.0 .................................. Passed 0.86 sec +179/426 Test #309: Test_FastqLoader_16.0 .................................. Passed 0.39 sec test 310 Start 310: Test_FastqLoader_16.1 @@ -10136,7 +10155,7 @@ 310: Test timeout computed to be: 1500 310: running 16.1 310: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load input/16.1.fastq --quality PHRED_33 --platform=PACBIO -o ./actual/16.1/obj 1>./actual/16.1/load.stdout 2>./actual/16.1/load.stderr -180/426 Test #310: Test_FastqLoader_16.1 .................................. Passed 0.60 sec +180/426 Test #310: Test_FastqLoader_16.1 .................................. Passed 0.40 sec test 311 Start 311: Test_FastqLoader_17.0 @@ -10145,7 +10164,7 @@ 311: Test timeout computed to be: 1500 311: running 17.0 311: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/latf-load /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/fastq-loader/input/17.0.fastq --quality PHRED_33 -o ./actual/17.0/obj 1>./actual/17.0/load.stdout 2>./actual/17.0/load.stderr -181/426 Test #311: Test_FastqLoader_17.0 .................................. Passed 0.19 sec +181/426 Test #311: Test_FastqLoader_17.0 .................................. Passed 0.18 sec test 312 Start 312: Test_FastqLoader_18.0 @@ -10180,7 +10199,7 @@ 315: KLoaderFile_noEolBeforeEof (0 s) 315: 315: *** No errors detected (7 s total) -184/426 Test #315: Test_LOADERFILE ........................................ Passed 7.89 sec +184/426 Test #315: Test_LOADERFILE ........................................ Passed 7.01 sec test 316 Start 316: Test_LOADER @@ -10192,7 +10211,7 @@ 316: LoaderMeta_WriteWithVersion (0 s) 316: 316: *** No errors detected (0 s total) -185/426 Test #316: Test_LOADER ............................................ Passed 0.10 sec +185/426 Test #316: Test_LOADER ............................................ Passed 0.34 sec test 317 Start 317: Test_regexpr @@ -10292,11 +10311,11 @@ 318: Quality33Adjusteed (0 s) 318: Quality64TooLow (0 s) 318: Quality64Adjusted (0 s) -318: [2026-09-05 08:23:04.688] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length +318: [2025-08-04 04:09:26.384] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length 318: TextQualityTruncated (0 s) 318: TextQualityAccepted (0 s) 318: TextQualityAdjusted (0 s) -318: [2026-09-05 08:23:04.695] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length +318: [2025-08-04 04:09:26.391] [warning] [code:130] Read DG7PMJN1:293:D12THACXX:2:1101:1161:1968: quality score length exceeds sequence length 318: QualityTooLongTruncated (0 s) 318: Aviti (0 s) 318: Nanopore1_readno_early (0 s) @@ -10402,7 +10421,7 @@ 318: illuminaOldBcOnly (0 s) 318: 318: *** No errors detected (0 s total) -187/426 Test #318: Test_sharq_reader ...................................... Passed 0.55 sec +187/426 Test #318: Test_sharq_reader ...................................... Passed 0.43 sec test 319 Start 319: Test_sharq_parser @@ -10410,12 +10429,12 @@ 319: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq 319: Test timeout computed to be: 1500 319: Running 1 test case... -319: [2026-09-05 08:23:05.013] [info] Parsing from 2 files -319: [2026-09-05 08:23:05.315] [parser_logger] [info] spots: 0, reads: 0 +319: [2025-08-04 04:09:26.638] [info] Parsing from 2 files +319: [2025-08-04 04:09:26.939] [parser_logger] [info] spots: 0, reads: 0 319: TestSequence (0 s) 319: 319: *** No errors detected (0 s total) -188/426 Test #319: Test_sharq_parser ...................................... Passed 0.42 sec +188/426 Test #319: Test_sharq_parser ...................................... Passed 0.32 sec test 320 Start 320: Test_sharq_writer @@ -10442,7 +10461,7 @@ 321: Test timeout computed to be: 1500 321: running 001.read.supported 321: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/001.R1.fastq 1>./actual/001.read.supported/load.stdout 2>./actual/001.read.supported/load.stderr -190/426 Test #321: Test_001.read.supported ................................ Passed 0.43 sec +190/426 Test #321: Test_001.read.supported ................................ Passed 0.24 sec test 322 Start 322: Test_001.read.supported-sa-hot @@ -10451,7 +10470,7 @@ 322: Test timeout computed to be: 1500 322: running 001.read.supported-sa-hot 322: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/001.R1.fastq 1>./actual/001.read.supported-sa-hot/load.stdout 2>./actual/001.read.supported-sa-hot/load.stderr -191/426 Test #322: Test_001.read.supported-sa-hot ......................... Passed 0.36 sec +191/426 Test #322: Test_001.read.supported-sa-hot ......................... Passed 0.34 sec test 323 Start 323: Test_001.read.supported-sa-cold @@ -10460,7 +10479,7 @@ 323: Test timeout computed to be: 1500 323: running 001.read.supported-sa-cold 323: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/001.R1.fastq 1>./actual/001.read.supported-sa-cold/load.stdout 2>./actual/001.read.supported-sa-cold/load.stderr -192/426 Test #323: Test_001.read.supported-sa-cold ........................ Passed 0.46 sec +192/426 Test #323: Test_001.read.supported-sa-cold ........................ Passed 0.54 sec test 324 Start 324: Test_001.read.unsupported @@ -10469,7 +10488,7 @@ 324: Test timeout computed to be: 1500 324: running 001.read.unsupported 324: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported/load.stdout 2>./actual/001.read.unsupported/load.stderr -193/426 Test #324: Test_001.read.unsupported .............................. Passed 0.33 sec +193/426 Test #324: Test_001.read.unsupported .............................. Passed 0.03 sec test 325 Start 325: Test_001.read.unsupported-sa-hot @@ -10478,7 +10497,7 @@ 325: Test timeout computed to be: 1500 325: running 001.read.unsupported-sa-hot 325: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported-sa-hot/load.stdout 2>./actual/001.read.unsupported-sa-hot/load.stderr -194/426 Test #325: Test_001.read.unsupported-sa-hot ....................... Passed 0.08 sec +194/426 Test #325: Test_001.read.unsupported-sa-hot ....................... Passed 0.03 sec test 326 Start 326: Test_001.read.unsupported-sa-cold @@ -10487,7 +10506,7 @@ 326: Test timeout computed to be: 1500 326: running 001.read.unsupported-sa-cold 326: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.unsupported.fq 1>./actual/001.read.unsupported-sa-cold/load.stdout 2>./actual/001.read.unsupported-sa-cold/load.stderr -195/426 Test #326: Test_001.read.unsupported-sa-cold ...................... Passed 0.25 sec +195/426 Test #326: Test_001.read.unsupported-sa-cold ...................... Passed 0.03 sec test 327 Start 327: Test_001.read.no_sequence @@ -10496,7 +10515,7 @@ 327: Test timeout computed to be: 1500 327: running 001.read.no_sequence 327: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence/load.stdout 2>./actual/001.read.no_sequence/load.stderr -196/426 Test #327: Test_001.read.no_sequence .............................. Passed 0.53 sec +196/426 Test #327: Test_001.read.no_sequence .............................. Passed 0.03 sec test 328 Start 328: Test_001.read.no_sequence-sa-hot @@ -10505,7 +10524,7 @@ 328: Test timeout computed to be: 1500 328: running 001.read.no_sequence-sa-hot 328: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence-sa-hot/load.stdout 2>./actual/001.read.no_sequence-sa-hot/load.stderr -197/426 Test #328: Test_001.read.no_sequence-sa-hot ....................... Passed 0.20 sec +197/426 Test #328: Test_001.read.no_sequence-sa-hot ....................... Passed 0.03 sec test 329 Start 329: Test_001.read.no_sequence-sa-cold @@ -10514,7 +10533,7 @@ 329: Test timeout computed to be: 1500 329: running 001.read.no_sequence-sa-cold 329: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_sequence.fq 1>./actual/001.read.no_sequence-sa-cold/load.stdout 2>./actual/001.read.no_sequence-sa-cold/load.stderr -198/426 Test #329: Test_001.read.no_sequence-sa-cold ...................... Passed 0.12 sec +198/426 Test #329: Test_001.read.no_sequence-sa-cold ...................... Passed 0.03 sec test 330 Start 330: Test_001.read.invalid_sequence @@ -10523,7 +10542,7 @@ 330: Test timeout computed to be: 1500 330: running 001.read.invalid_sequence 330: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence/load.stdout 2>./actual/001.read.invalid_sequence/load.stderr -199/426 Test #330: Test_001.read.invalid_sequence ......................... Passed 0.48 sec +199/426 Test #330: Test_001.read.invalid_sequence ......................... Passed 0.02 sec test 331 Start 331: Test_001.read.invalid_sequence-sa-hot @@ -10532,7 +10551,7 @@ 331: Test timeout computed to be: 1500 331: running 001.read.invalid_sequence-sa-hot 331: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence-sa-hot/load.stdout 2>./actual/001.read.invalid_sequence-sa-hot/load.stderr -200/426 Test #331: Test_001.read.invalid_sequence-sa-hot .................. Passed 0.29 sec +200/426 Test #331: Test_001.read.invalid_sequence-sa-hot .................. Passed 0.02 sec test 332 Start 332: Test_001.read.invalid_sequence-sa-cold @@ -10541,7 +10560,7 @@ 332: Test timeout computed to be: 1500 332: running 001.read.invalid_sequence-sa-cold 332: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.invalid_sequence.fq 1>./actual/001.read.invalid_sequence-sa-cold/load.stdout 2>./actual/001.read.invalid_sequence-sa-cold/load.stderr -201/426 Test #332: Test_001.read.invalid_sequence-sa-cold ................. Passed 0.12 sec +201/426 Test #332: Test_001.read.invalid_sequence-sa-cold ................. Passed 0.02 sec test 333 Start 333: Test_001.read.no_quality @@ -10550,7 +10569,7 @@ 333: Test timeout computed to be: 1500 333: running 001.read.no_quality 333: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality/load.stdout 2>./actual/001.read.no_quality/load.stderr -202/426 Test #333: Test_001.read.no_quality ............................... Passed 0.22 sec +202/426 Test #333: Test_001.read.no_quality ............................... Passed 0.02 sec test 334 Start 334: Test_001.read.no_quality-sa-hot @@ -10559,7 +10578,7 @@ 334: Test timeout computed to be: 1500 334: running 001.read.no_quality-sa-hot 334: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality-sa-hot/load.stdout 2>./actual/001.read.no_quality-sa-hot/load.stderr -203/426 Test #334: Test_001.read.no_quality-sa-hot ........................ Passed 0.28 sec +203/426 Test #334: Test_001.read.no_quality-sa-hot ........................ Passed 0.03 sec test 335 Start 335: Test_001.read.no_quality-sa-cold @@ -10568,7 +10587,7 @@ 335: Test timeout computed to be: 1500 335: running 001.read.no_quality-sa-cold 335: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.no_quality.fq 1>./actual/001.read.no_quality-sa-cold/load.stdout 2>./actual/001.read.no_quality-sa-cold/load.stderr -204/426 Test #335: Test_001.read.no_quality-sa-cold ....................... Passed 0.05 sec +204/426 Test #335: Test_001.read.no_quality-sa-cold ....................... Passed 0.02 sec test 336 Start 336: Test_001.read.no_quality_2 @@ -10604,7 +10623,7 @@ 339: Test timeout computed to be: 1500 339: running 001.read.invalid_quality33 339: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --quality=33 input/001.read.invalid_quality33.fq 1>./actual/001.read.invalid_quality33/load.stdout 2>./actual/001.read.invalid_quality33/load.stderr -208/426 Test #339: Test_001.read.invalid_quality33 ........................ Passed 0.03 sec +208/426 Test #339: Test_001.read.invalid_quality33 ........................ Passed 0.02 sec test 340 Start 340: Test_001.read.invalid_quality33-sa-hot @@ -10658,7 +10677,7 @@ 345: Test timeout computed to be: 1500 345: running 001.read.invalid_quality0 345: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq 1>./actual/001.read.invalid_quality0/load.stdout 2>./actual/001.read.invalid_quality0/load.stderr -214/426 Test #345: Test_001.read.invalid_quality0 ......................... Passed 0.03 sec +214/426 Test #345: Test_001.read.invalid_quality0 ......................... Passed 0.04 sec test 346 Start 346: Test_001.read.invalid_quality0-sa-hot @@ -10667,7 +10686,7 @@ 346: Test timeout computed to be: 1500 346: running 001.read.invalid_quality0-sa-hot 346: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 --quality=0 input/001.read.invalid_quality0.fq 1>./actual/001.read.invalid_quality0-sa-hot/load.stdout 2>./actual/001.read.invalid_quality0-sa-hot/load.stderr -215/426 Test #346: Test_001.read.invalid_quality0-sa-hot .................. Passed 0.02 sec +215/426 Test #346: Test_001.read.invalid_quality0-sa-hot .................. Passed 0.05 sec test 347 Start 347: Test_001.read.invalid_quality0-sa-cold @@ -10694,7 +10713,7 @@ 349: Test timeout computed to be: 1500 349: running 001.read.long_quality-sa-hot 349: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.long_quality.fq 1>./actual/001.read.long_quality-sa-hot/load.stdout 2>./actual/001.read.long_quality-sa-hot/load.stderr -218/426 Test #349: Test_001.read.long_quality-sa-hot ...................... Passed 0.44 sec +218/426 Test #349: Test_001.read.long_quality-sa-hot ...................... Passed 0.50 sec test 350 Start 350: Test_001.read.long_quality-sa-cold @@ -10703,7 +10722,7 @@ 350: Test timeout computed to be: 1500 350: running 001.read.long_quality-sa-cold 350: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.long_quality.fq 1>./actual/001.read.long_quality-sa-cold/load.stdout 2>./actual/001.read.long_quality-sa-cold/load.stderr -219/426 Test #350: Test_001.read.long_quality-sa-cold ..................... Passed 0.30 sec +219/426 Test #350: Test_001.read.long_quality-sa-cold ..................... Passed 0.44 sec test 351 Start 351: Test_001.read.bad_quality0 @@ -10712,7 +10731,7 @@ 351: Test timeout computed to be: 1500 351: running 001.read.bad_quality0 351: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0/load.stdout 2>./actual/001.read.bad_quality0/load.stderr -220/426 Test #351: Test_001.read.bad_quality0 ............................. Passed 0.20 sec +220/426 Test #351: Test_001.read.bad_quality0 ............................. Passed 0.12 sec test 352 Start 352: Test_001.read.bad_quality0-sa-hot @@ -10721,7 +10740,7 @@ 352: Test timeout computed to be: 1500 352: running 001.read.bad_quality0-sa-hot 352: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0-sa-hot/load.stdout 2>./actual/001.read.bad_quality0-sa-hot/load.stderr -221/426 Test #352: Test_001.read.bad_quality0-sa-hot ...................... Passed 0.14 sec +221/426 Test #352: Test_001.read.bad_quality0-sa-hot ...................... Passed 0.03 sec test 353 Start 353: Test_001.read.bad_quality0-sa-cold @@ -10730,7 +10749,7 @@ 353: Test timeout computed to be: 1500 353: running 001.read.bad_quality0-sa-cold 353: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.bad_quality0.fq 1>./actual/001.read.bad_quality0-sa-cold/load.stdout 2>./actual/001.read.bad_quality0-sa-cold/load.stderr -222/426 Test #353: Test_001.read.bad_quality0-sa-cold ..................... Passed 0.32 sec +222/426 Test #353: Test_001.read.bad_quality0-sa-cold ..................... Passed 0.03 sec test 354 Start 354: Test_001.read.bad_quality33 @@ -10739,7 +10758,7 @@ 354: Test timeout computed to be: 1500 354: running 001.read.bad_quality33 354: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33/load.stdout 2>./actual/001.read.bad_quality33/load.stderr -223/426 Test #354: Test_001.read.bad_quality33 ............................ Passed 0.29 sec +223/426 Test #354: Test_001.read.bad_quality33 ............................ Passed 0.03 sec test 355 Start 355: Test_001.read.bad_quality33-sa-hot @@ -10748,7 +10767,7 @@ 355: Test timeout computed to be: 1500 355: running 001.read.bad_quality33-sa-hot 355: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33-sa-hot/load.stdout 2>./actual/001.read.bad_quality33-sa-hot/load.stderr -224/426 Test #355: Test_001.read.bad_quality33-sa-hot ..................... Passed 0.30 sec +224/426 Test #355: Test_001.read.bad_quality33-sa-hot ..................... Passed 0.05 sec test 356 Start 356: Test_001.read.bad_quality33-sa-cold @@ -10757,7 +10776,7 @@ 356: Test timeout computed to be: 1500 356: running 001.read.bad_quality33-sa-cold 356: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/001.read.bad_quality33.fq 1>./actual/001.read.bad_quality33-sa-cold/load.stdout 2>./actual/001.read.bad_quality33-sa-cold/load.stderr -225/426 Test #356: Test_001.read.bad_quality33-sa-cold .................... Passed 0.09 sec +225/426 Test #356: Test_001.read.bad_quality33-sa-cold .................... Passed 0.05 sec test 357 Start 357: Test_002.readTypes_default @@ -10766,7 +10785,7 @@ 357: Test timeout computed to be: 1500 357: running 002.readTypes_default 357: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default/load.stdout 2>./actual/002.readTypes_default/load.stderr -226/426 Test #357: Test_002.readTypes_default ............................. Passed 0.42 sec +226/426 Test #357: Test_002.readTypes_default ............................. Passed 0.34 sec test 358 Start 358: Test_002.readTypes_default-sa-hot @@ -10775,7 +10794,7 @@ 358: Test timeout computed to be: 1500 358: running 002.readTypes_default-sa-hot 358: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default-sa-hot/load.stdout 2>./actual/002.readTypes_default-sa-hot/load.stderr -227/426 Test #358: Test_002.readTypes_default-sa-hot ...................... Passed 0.85 sec +227/426 Test #358: Test_002.readTypes_default-sa-hot ...................... Passed 0.65 sec test 359 Start 359: Test_002.readTypes_default-sa-cold @@ -10784,7 +10803,7 @@ 359: Test timeout computed to be: 1500 359: running 002.readTypes_default-sa-cold 359: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_default-sa-cold/load.stdout 2>./actual/002.readTypes_default-sa-cold/load.stderr -228/426 Test #359: Test_002.readTypes_default-sa-cold ..................... Passed 0.55 sec +228/426 Test #359: Test_002.readTypes_default-sa-cold ..................... Passed 0.61 sec test 360 Start 360: Test_002.readTypes_technical @@ -10793,7 +10812,7 @@ 360: Test timeout computed to be: 1500 360: running 002.readTypes_technical 360: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical/load.stdout 2>./actual/002.readTypes_technical/load.stderr -229/426 Test #360: Test_002.readTypes_technical ........................... Passed 0.40 sec +229/426 Test #360: Test_002.readTypes_technical ........................... Passed 0.37 sec test 361 Start 361: Test_002.readTypes_technical-sa-hot @@ -10802,7 +10821,7 @@ 361: Test timeout computed to be: 1500 361: running 002.readTypes_technical-sa-hot 361: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical-sa-hot/load.stdout 2>./actual/002.readTypes_technical-sa-hot/load.stderr -230/426 Test #361: Test_002.readTypes_technical-sa-hot .................... Passed 0.66 sec +230/426 Test #361: Test_002.readTypes_technical-sa-hot .................... Passed 0.88 sec test 362 Start 362: Test_002.readTypes_technical-sa-cold @@ -10811,7 +10830,7 @@ 362: Test timeout computed to be: 1500 362: running 002.readTypes_technical-sa-cold 362: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TT input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_technical-sa-cold/load.stdout 2>./actual/002.readTypes_technical-sa-cold/load.stderr -231/426 Test #362: Test_002.readTypes_technical-sa-cold ................... Passed 0.78 sec +231/426 Test #362: Test_002.readTypes_technical-sa-cold ................... Passed 0.58 sec test 363 Start 363: Test_002.readTypes_mixed @@ -10820,7 +10839,7 @@ 363: Test timeout computed to be: 1500 363: running 002.readTypes_mixed 363: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed/load.stdout 2>./actual/002.readTypes_mixed/load.stderr -232/426 Test #363: Test_002.readTypes_mixed ............................... Passed 0.36 sec +232/426 Test #363: Test_002.readTypes_mixed ............................... Passed 0.34 sec test 364 Start 364: Test_002.readTypes_mixed-sa-hot @@ -10829,7 +10848,7 @@ 364: Test timeout computed to be: 1500 364: running 002.readTypes_mixed-sa-hot 364: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed-sa-hot/load.stdout 2>./actual/002.readTypes_mixed-sa-hot/load.stderr -233/426 Test #364: Test_002.readTypes_mixed-sa-hot ........................ Passed 0.77 sec +233/426 Test #364: Test_002.readTypes_mixed-sa-hot ........................ Passed 0.65 sec test 365 Start 365: Test_002.readTypes_mixed-sa-cold @@ -10838,7 +10857,7 @@ 365: Test timeout computed to be: 1500 365: running 002.readTypes_mixed-sa-cold 365: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TB input/002.allBiological_1.fq input/002.allBiological_2.fq 1>./actual/002.readTypes_mixed-sa-cold/load.stdout 2>./actual/002.readTypes_mixed-sa-cold/load.stderr -234/426 Test #365: Test_002.readTypes_mixed-sa-cold ....................... Passed 0.74 sec +234/426 Test #365: Test_002.readTypes_mixed-sa-cold ....................... Passed 0.56 sec test 366 Start 366: Test_002.readTypes_missing @@ -10847,7 +10866,7 @@ 366: Test timeout computed to be: 1500 366: running 002.readTypes_missing 366: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing/load.stdout 2>./actual/002.readTypes_missing/load.stderr -235/426 Test #366: Test_002.readTypes_missing ............................. Passed 0.20 sec +235/426 Test #366: Test_002.readTypes_missing ............................. Passed 0.03 sec test 367 Start 367: Test_002.readTypes_missing-sa-hot @@ -10856,7 +10875,7 @@ 367: Test timeout computed to be: 1500 367: running 002.readTypes_missing-sa-hot 367: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing-sa-hot/load.stdout 2>./actual/002.readTypes_missing-sa-hot/load.stderr -236/426 Test #367: Test_002.readTypes_missing-sa-hot ...................... Passed 0.13 sec +236/426 Test #367: Test_002.readTypes_missing-sa-hot ...................... Passed 0.02 sec test 368 Start 368: Test_002.readTypes_missing-sa-cold @@ -10865,7 +10884,7 @@ 368: Test timeout computed to be: 1500 368: running 002.readTypes_missing-sa-cold 368: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_missing-sa-cold/load.stdout 2>./actual/002.readTypes_missing-sa-cold/load.stderr -237/426 Test #368: Test_002.readTypes_missing-sa-cold ..................... Passed 0.20 sec +237/426 Test #368: Test_002.readTypes_missing-sa-cold ..................... Passed 0.02 sec test 369 Start 369: Test_002.readTypes_mismatch @@ -10874,7 +10893,7 @@ 369: Test timeout computed to be: 1500 369: running 002.readTypes_mismatch 369: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=TB --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_mismatch/load.stdout 2>./actual/002.readTypes_mismatch/load.stderr -238/426 Test #369: Test_002.readTypes_mismatch ............................ Passed 0.19 sec +238/426 Test #369: Test_002.readTypes_mismatch ............................ Passed 0.02 sec test 370 Start 370: Test_002.readTypes_mismatch-sa-hot @@ -10883,7 +10902,7 @@ 370: Test timeout computed to be: 1500 370: running 002.readTypes_mismatch-sa-hot 370: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=TB --read1PairFiles=input/001.R1.fastq 1>./actual/002.readTypes_mismatch-sa-hot/load.stdout 2>./actual/002.readTypes_mismatch-sa-hot/load.stderr -239/426 Test #370: Test_002.readTypes_mismatch-sa-hot ..................... Passed 0.10 sec +239/426 Test #370: Test_002.readTypes_mismatch-sa-hot ..................... Passed 0.02 sec test 371 Start 371: Test_002.readTypes_mismatch-sa-cold @@ -10919,7 +10938,7 @@ 374: Test timeout computed to be: 1500 374: running 002.readTypes_unexpected-sa-cold 374: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=X --read1PairFiles=input/002.allBiological_1.fq 1>./actual/002.readTypes_unexpected-sa-cold/load.stdout 2>./actual/002.readTypes_unexpected-sa-cold/load.stderr -243/426 Test #374: Test_002.readTypes_unexpected-sa-cold .................. Passed 0.36 sec +243/426 Test #374: Test_002.readTypes_unexpected-sa-cold .................. Passed 0.02 sec test 375 Start 375: Test_002.readTypes_interlaved_fail_1 @@ -10928,7 +10947,7 @@ 375: Test timeout computed to be: 1500 375: running 002.readTypes_interlaved_fail_1 375: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_1/load.stdout 2>./actual/002.readTypes_interlaved_fail_1/load.stderr -244/426 Test #375: Test_002.readTypes_interlaved_fail_1 ................... Passed 0.04 sec +244/426 Test #375: Test_002.readTypes_interlaved_fail_1 ................... Passed 0.03 sec test 376 Start 376: Test_002.readTypes_interleaved_fail_4 @@ -10955,7 +10974,7 @@ 378: Test timeout computed to be: 1500 378: running 002.readTypes_interlaved_fail_3-sa-cold 378: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_3-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_fail_3-sa-cold/load.stderr -247/426 Test #378: Test_002.readTypes_interlaved_fail_3-sa-cold ........... Passed 0.51 sec +247/426 Test #378: Test_002.readTypes_interlaved_fail_3-sa-cold ........... Passed 0.35 sec test 379 Start 379: Test_002.readTypes_interlaved_fail_2-sa-hot @@ -10964,7 +10983,7 @@ 379: Test timeout computed to be: 1500 379: running 002.readTypes_interlaved_fail_2-sa-hot 379: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_2-sa-hot/load.stdout 2>./actual/002.readTypes_interlaved_fail_2-sa-hot/load.stderr -248/426 Test #379: Test_002.readTypes_interlaved_fail_2-sa-hot ............ Passed 0.36 sec +248/426 Test #379: Test_002.readTypes_interlaved_fail_2-sa-hot ............ Passed 0.35 sec test 380 Start 380: Test_002.readTypes_interlaved_fail_2-sa-cold @@ -10973,7 +10992,7 @@ 380: Test timeout computed to be: 1500 380: running 002.readTypes_interlaved_fail_2-sa-cold 380: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_fail_2-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_fail_2-sa-cold/load.stderr -249/426 Test #380: Test_002.readTypes_interlaved_fail_2-sa-cold ........... Passed 0.48 sec +249/426 Test #380: Test_002.readTypes_interlaved_fail_2-sa-cold ........... Passed 0.35 sec test 381 Start 381: Test_002.readTypes_interlaved_pass @@ -10982,7 +11001,7 @@ 381: Test timeout computed to be: 1500 381: running 002.readTypes_interlaved_pass 381: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_pass/load.stdout 2>./actual/002.readTypes_interlaved_pass/load.stderr -250/426 Test #381: Test_002.readTypes_interlaved_pass ..................... Passed 0.50 sec +250/426 Test #381: Test_002.readTypes_interlaved_pass ..................... Passed 0.44 sec test 382 Start 382: Test_002.readTypes_interlaved_pass-sa-hot @@ -11000,7 +11019,7 @@ 383: Test timeout computed to be: 1500 383: running 002.readTypes_interlaved_pass-sa-cold 383: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BTB input/002.readTypes_interleaved_1.fq input/002.readTypes_interleaved_2.fq 1>./actual/002.readTypes_interlaved_pass-sa-cold/load.stdout 2>./actual/002.readTypes_interlaved_pass-sa-cold/load.stderr -252/426 Test #383: Test_002.readTypes_interlaved_pass-sa-cold ............. Passed 0.57 sec +252/426 Test #383: Test_002.readTypes_interlaved_pass-sa-cold ............. Passed 0.55 sec test 384 Start 384: Test_003.files_not_exists @@ -11009,7 +11028,7 @@ 384: Test timeout computed to be: 1500 384: running 003.files_not_exists 384: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp dummy1.fq 1>./actual/003.files_not_exists/load.stdout 2>./actual/003.files_not_exists/load.stderr -253/426 Test #384: Test_003.files_not_exists .............................. Passed 0.06 sec +253/426 Test #384: Test_003.files_not_exists .............................. Passed 0.09 sec test 385 Start 385: Test_003.files_not_exists-sa-hot @@ -11018,7 +11037,7 @@ 385: Test timeout computed to be: 1500 385: running 003.files_not_exists-sa-hot 385: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly dummy1.fq 1>./actual/003.files_not_exists-sa-hot/load.stdout 2>./actual/003.files_not_exists-sa-hot/load.stderr -254/426 Test #385: Test_003.files_not_exists-sa-hot ....................... Passed 0.12 sec +254/426 Test #385: Test_003.files_not_exists-sa-hot ....................... Passed 0.04 sec test 386 Start 386: Test_003.files_not_exists-sa-cold @@ -11027,7 +11046,7 @@ 386: Test timeout computed to be: 1500 386: running 003.files_not_exists-sa-cold 386: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 dummy1.fq 1>./actual/003.files_not_exists-sa-cold/load.stdout 2>./actual/003.files_not_exists-sa-cold/load.stderr -255/426 Test #386: Test_003.files_not_exists-sa-cold ...................... Passed 0.04 sec +255/426 Test #386: Test_003.files_not_exists-sa-cold ...................... Passed 0.08 sec test 387 Start 387: Test_003.files_not_valid @@ -11036,7 +11055,7 @@ 387: Test timeout computed to be: 1500 387: running 003.files_not_valid 387: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/003.empty.fq 1>./actual/003.files_not_valid/load.stdout 2>./actual/003.files_not_valid/load.stderr -256/426 Test #387: Test_003.files_not_valid ............................... Passed 0.03 sec +256/426 Test #387: Test_003.files_not_valid ............................... Passed 0.16 sec test 388 Start 388: Test_003.files_not_valid-sa-hot @@ -11045,7 +11064,7 @@ 388: Test timeout computed to be: 1500 388: running 003.files_not_valid-sa-hot 388: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/003.empty.fq 1>./actual/003.files_not_valid-sa-hot/load.stdout 2>./actual/003.files_not_valid-sa-hot/load.stderr -257/426 Test #388: Test_003.files_not_valid-sa-hot ........................ Passed 0.03 sec +257/426 Test #388: Test_003.files_not_valid-sa-hot ........................ Passed 0.40 sec test 389 Start 389: Test_003.files_not_valid-sa-cold @@ -11054,7 +11073,7 @@ 389: Test timeout computed to be: 1500 389: running 003.files_not_valid-sa-cold 389: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/003.empty.fq 1>./actual/003.files_not_valid-sa-cold/load.stdout 2>./actual/003.files_not_valid-sa-cold/load.stderr -258/426 Test #389: Test_003.files_not_valid-sa-cold ....................... Passed 0.04 sec +258/426 Test #389: Test_003.files_not_valid-sa-cold ....................... Passed 0.38 sec test 390 Start 390: Test_003.files_readpairs @@ -11063,7 +11082,7 @@ 390: Test timeout computed to be: 1500 390: running 003.files_readpairs 390: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs/load.stdout 2>./actual/003.files_readpairs/load.stderr -259/426 Test #390: Test_003.files_readpairs ............................... Passed 1.28 sec +259/426 Test #390: Test_003.files_readpairs ............................... Passed 1.69 sec test 391 Start 391: Test_003.files_readpairs-sa-hot @@ -11072,7 +11091,7 @@ 391: Test timeout computed to be: 1500 391: running 003.files_readpairs-sa-hot 391: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs-sa-hot/load.stdout 2>./actual/003.files_readpairs-sa-hot/load.stderr -260/426 Test #391: Test_003.files_readpairs-sa-hot ........................ Passed 2.53 sec +260/426 Test #391: Test_003.files_readpairs-sa-hot ........................ Passed 2.98 sec test 392 Start 392: Test_003.files_readpairs-sa-cold @@ -11081,7 +11100,7 @@ 392: Test timeout computed to be: 1500 392: running 003.files_readpairs-sa-cold 392: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq 1>./actual/003.files_readpairs-sa-cold/load.stdout 2>./actual/003.files_readpairs-sa-cold/load.stderr -261/426 Test #392: Test_003.files_readpairs-sa-cold ....................... Passed 2.43 sec +261/426 Test #392: Test_003.files_readpairs-sa-cold ....................... Passed 3.26 sec test 393 Start 393: Test_003.files_mixed @@ -11090,7 +11109,7 @@ 393: Test timeout computed to be: 1500 393: running 003.files_mixed 393: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/005.offset0_1.fq input/001.R1.fastq 1>./actual/003.files_mixed/load.stdout 2>./actual/003.files_mixed/load.stderr -262/426 Test #393: Test_003.files_mixed ................................... Passed 0.04 sec +262/426 Test #393: Test_003.files_mixed ................................... Passed 0.03 sec test 394 Start 394: Test_003.files_mixed-sa-hot @@ -11099,7 +11118,7 @@ 394: Test timeout computed to be: 1500 394: running 003.files_mixed-sa-hot 394: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/005.offset0_1.fq input/001.R1.fastq 1>./actual/003.files_mixed-sa-hot/load.stdout 2>./actual/003.files_mixed-sa-hot/load.stderr -263/426 Test #394: Test_003.files_mixed-sa-hot ............................ Passed 0.03 sec +263/426 Test #394: Test_003.files_mixed-sa-hot ............................ Passed 0.02 sec test 395 Start 395: Test_003.files_mixed-sa-cold @@ -11117,7 +11136,7 @@ 396: Test timeout computed to be: 1500 396: running 003.files_mixed_cluster 396: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_R1.fastq input/003.t_I1.fastq input/001.R1.fastq 1>./actual/003.files_mixed_cluster/load.stdout 2>./actual/003.files_mixed_cluster/load.stderr -265/426 Test #396: Test_003.files_mixed_cluster ........................... Passed 0.04 sec +265/426 Test #396: Test_003.files_mixed_cluster ........................... Passed 0.03 sec test 397 Start 397: Test_003.files_10x_mixed @@ -11126,7 +11145,7 @@ 397: Test timeout computed to be: 1500 397: running 003.files_10x_mixed 397: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_I1.fastq input/003.t_R1.fastq input/003.t_R2.fastq input/003._I1.fastq input/003.R1.fastq input/003.R2.fastq 1>./actual/003.files_10x_mixed/load.stdout 2>./actual/003.files_10x_mixed/load.stderr -266/426 Test #397: Test_003.files_10x_mixed ............................... Passed 0.06 sec +266/426 Test #397: Test_003.files_10x_mixed ............................... Passed 0.08 sec test 398 Start 398: Test_003.files_10x_mixed-sa-hot @@ -11153,7 +11172,7 @@ 400: Test timeout computed to be: 1500 400: running 003.readTypes_10x 400: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/003.readTypes_10x/load.stdout 2>./actual/003.readTypes_10x/load.stderr -269/426 Test #400: Test_003.readTypes_10x ................................. Passed 0.45 sec +269/426 Test #400: Test_003.readTypes_10x ................................. Passed 0.62 sec test 401 Start 401: Test_003.wrong_pairing @@ -11189,7 +11208,7 @@ 404: Test timeout computed to be: 1500 404: running 004.truncated.fail 404: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.fail/load.stdout 2>./actual/004.truncated.fail/load.stderr -273/426 Test #404: Test_004.truncated.fail ................................ Passed 0.96 sec +273/426 Test #404: Test_004.truncated.fail ................................ Passed 0.59 sec test 405 Start 405: Test_004.truncated.pass @@ -11198,7 +11217,7 @@ 405: Test timeout computed to be: 1500 405: running 004.truncated.pass 405: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass/load.stdout 2>./actual/004.truncated.pass/load.stderr -274/426 Test #405: Test_004.truncated.pass ................................ Passed 0.87 sec +274/426 Test #405: Test_004.truncated.pass ................................ Passed 0.71 sec test 406 Start 406: Test_004.truncated.pass-sa-hot @@ -11207,7 +11226,7 @@ 406: Test timeout computed to be: 1500 406: running 004.truncated.pass-sa-hot 406: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass-sa-hot/load.stdout 2>./actual/004.truncated.pass-sa-hot/load.stderr -275/426 Test #406: Test_004.truncated.pass-sa-hot ......................... Passed 1.53 sec +275/426 Test #406: Test_004.truncated.pass-sa-hot ......................... Passed 1.42 sec test 407 Start 407: Test_004.truncated.pass-sa-cold @@ -11216,7 +11235,7 @@ 407: Test timeout computed to be: 1500 407: running 004.truncated.pass-sa-cold 407: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --allowEarlyFileEnd input/004.truncated_1.fq.gz input/004.truncated_2.fq.gz 1>./actual/004.truncated.pass-sa-cold/load.stdout 2>./actual/004.truncated.pass-sa-cold/load.stderr -276/426 Test #407: Test_004.truncated.pass-sa-cold ........................ Passed 1.36 sec +276/426 Test #407: Test_004.truncated.pass-sa-cold ........................ Passed 1.33 sec test 408 Start 408: Test_005.offset0 @@ -11234,7 +11253,7 @@ 409: Test timeout computed to be: 1500 409: running 005.offset0-sa-hot 409: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/005.offset0_1.fq input/005.offset0_2.fq 1>./actual/005.offset0-sa-hot/load.stdout 2>./actual/005.offset0-sa-hot/load.stderr -278/426 Test #409: Test_005.offset0-sa-hot ................................ Passed 0.65 sec +278/426 Test #409: Test_005.offset0-sa-hot ................................ Passed 0.55 sec test 410 Start 410: Test_005.offset0-sa-cold @@ -11252,7 +11271,7 @@ 411: Test timeout computed to be: 1500 411: running 005.offset64 411: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp input/005.offset64_1.fq input/005.offset64_2.fq 1>./actual/005.offset64/load.stdout 2>./actual/005.offset64/load.stderr -280/426 Test #411: Test_005.offset64 ...................................... Passed 0.34 sec +280/426 Test #411: Test_005.offset64 ...................................... Passed 0.55 sec test 412 Start 412: Test_005.offset64-sa-hot @@ -11279,7 +11298,7 @@ 414: Test timeout computed to be: 1500 414: running 006.duplicate 414: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/006.duplicate.fq 1>./actual/006.duplicate/load.stdout 2>./actual/006.duplicate/load.stderr -283/426 Test #414: Test_006.duplicate ..................................... Passed 0.34 sec +283/426 Test #414: Test_006.duplicate ..................................... Passed 0.23 sec test 415 Start 415: Test_007.digest.udenfined @@ -11324,7 +11343,7 @@ 419: Test timeout computed to be: 1500 419: running 007.digest.multiple-sa-hot 419: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/007.digest.multiple-sa-hot/load.stdout 2>./actual/007.digest.multiple-sa-hot/load.stderr -288/426 Test #419: Test_007.digest.multiple-sa-hot ........................ Passed 0.03 sec +288/426 Test #419: Test_007.digest.multiple-sa-hot ........................ Passed 0.02 sec test 420 Start 420: Test_007.digest.multiple-sa-cold @@ -11333,7 +11352,7 @@ 420: Test timeout computed to be: 1500 420: running 007.digest.multiple-sa-cold 420: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --digest input/003.t_R1.fastq input/003.t_R1.fastq input/003.t_I1.fastq 1>./actual/007.digest.multiple-sa-cold/load.stdout 2>./actual/007.digest.multiple-sa-cold/load.stderr -289/426 Test #420: Test_007.digest.multiple-sa-cold ....................... Passed 0.03 sec +289/426 Test #420: Test_007.digest.multiple-sa-cold ....................... Passed 0.08 sec test 421 Start 421: Test_007.digest.groups @@ -11342,7 +11361,7 @@ 421: Test timeout computed to be: 1500 421: running 007.digest.groups 421: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --digest input/003.t_R1.fastq.gz input/003.t2_R1.fastq input/003.t3_R1.fastq input/003.t_R2.fastq.gz input/003.t2_R2.fastq input/003.t3_R2.fastq input/003.t_I1.fastq.gz input/003.t2_I1.fastq input/003.t3_I1.fastq 1>./actual/007.digest.groups/load.stdout 2>./actual/007.digest.groups/load.stderr -290/426 Test #421: Test_007.digest.groups ................................. Passed 0.09 sec +290/426 Test #421: Test_007.digest.groups ................................. Passed 0.12 sec test 422 Start 422: Test_007.digest.error @@ -11378,7 +11397,7 @@ 425: Test timeout computed to be: 1500 425: running 008.telemetry_pass 425: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --readTypes=BBT --read1PairFiles=input/003.t_R1.fastq.gz,input/003.t2_R1.fastq,input/003.t3_R1.fastq --read2PairFiles=input/003.t_R2.fastq.gz,input/003.t2_R2.fastq,input/003.t3_R2.fastq --read3PairFiles=input/003.t_I1.fastq.gz,input/003.t2_I1.fastq,input/003.t3_I1.fastq -t ./actual/008.telemetry_pass/telemetry 1>./actual/008.telemetry_pass/load.stdout 2>./actual/008.telemetry_pass/load.stderr -294/426 Test #425: Test_008.telemetry_pass ................................ Passed 1.38 sec +294/426 Test #425: Test_008.telemetry_pass ................................ Passed 1.28 sec test 426 Start 426: Test_009.more_than_4_per_spot @@ -11387,7 +11406,7 @@ 426: Test timeout computed to be: 1500 426: running 009.more_than_4_per_spot 426: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --debug input/009.test_I1_001.fastq input/009.test_R1_001.fastq input/009.test_R2_001.fastq input/009.test_R3_001.fastq 1>./actual/009.more_than_4_per_spot/load.stdout 2>./actual/009.more_than_4_per_spot/load.stderr -295/426 Test #426: Test_009.more_than_4_per_spot .......................... Passed 0.22 sec +295/426 Test #426: Test_009.more_than_4_per_spot .......................... Passed 0.18 sec test 427 Start 427: Test_010.errors.invalid_seq_pass1 @@ -11405,7 +11424,7 @@ 428: Test timeout computed to be: 1500 428: running 010.errors.invalid_seq_pass1-sa-hot 428: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass1-sa-hot/load.stdout 2>./actual/010.errors.invalid_seq_pass1-sa-hot/load.stderr -297/426 Test #428: Test_010.errors.invalid_seq_pass1-sa-hot ............... Passed 0.56 sec +297/426 Test #428: Test_010.errors.invalid_seq_pass1-sa-hot ............... Passed 0.34 sec test 429 Start 429: Test_010.errors.invalid_seq_pass1-sa-cold @@ -11414,7 +11433,7 @@ 429: Test timeout computed to be: 1500 429: running 010.errors.invalid_seq_pass1-sa-cold 429: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass1-sa-cold/load.stdout 2>./actual/010.errors.invalid_seq_pass1-sa-cold/load.stderr -298/426 Test #429: Test_010.errors.invalid_seq_pass1-sa-cold .............. Passed 0.35 sec +298/426 Test #429: Test_010.errors.invalid_seq_pass1-sa-cold .............. Passed 0.34 sec test 430 Start 430: Test_010.errors.invalid_seq_pass2 @@ -11423,7 +11442,7 @@ 430: Test timeout computed to be: 1500 430: running 010.errors.invalid_seq_pass2 430: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_pass2/load.stdout 2>./actual/010.errors.invalid_seq_pass2/load.stderr -299/426 Test #430: Test_010.errors.invalid_seq_pass2 ...................... Passed 0.03 sec +299/426 Test #430: Test_010.errors.invalid_seq_pass2 ...................... Passed 0.02 sec test 431 Start 431: Test_010.errors.invalid_seq_pass2-sa-hot @@ -11459,7 +11478,7 @@ 434: Test timeout computed to be: 1500 434: running 010.errors.invalid_seq_fail-sa-hot 434: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_fail-sa-hot/load.stdout 2>./actual/010.errors.invalid_seq_fail-sa-hot/load.stderr -303/426 Test #434: Test_010.errors.invalid_seq_fail-sa-hot ................ Passed 0.03 sec +303/426 Test #434: Test_010.errors.invalid_seq_fail-sa-hot ................ Passed 0.02 sec test 435 Start 435: Test_010.errors.invalid_seq_fail-sa-cold @@ -11468,7 +11487,7 @@ 435: Test timeout computed to be: 1500 435: running 010.errors.invalid_seq_fail-sa-cold 435: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 3 input/010.errors.invalid_seq.fq 1>./actual/010.errors.invalid_seq_fail-sa-cold/load.stdout 2>./actual/010.errors.invalid_seq_fail-sa-cold/load.stderr -304/426 Test #435: Test_010.errors.invalid_seq_fail-sa-cold ............... Passed 0.03 sec +304/426 Test #435: Test_010.errors.invalid_seq_fail-sa-cold ............... Passed 0.02 sec test 436 Start 436: Test_011.nanopore.3 @@ -11486,7 +11505,7 @@ 437: Test timeout computed to be: 1500 437: running 011.nanopore.3-sa-hot 437: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/011.nanopore.3.fq 1>./actual/011.nanopore.3-sa-hot/load.stdout 2>./actual/011.nanopore.3-sa-hot/load.stderr -306/426 Test #437: Test_011.nanopore.3-sa-hot ............................. Passed 0.45 sec +306/426 Test #437: Test_011.nanopore.3-sa-hot ............................. Passed 0.35 sec test 438 Start 438: Test_011.nanopore.3-sa-cold @@ -11495,7 +11514,7 @@ 438: Test timeout computed to be: 1500 438: running 011.nanopore.3-sa-cold 438: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/011.nanopore.3.fq 1>./actual/011.nanopore.3-sa-cold/load.stdout 2>./actual/011.nanopore.3-sa-cold/load.stderr -307/426 Test #438: Test_011.nanopore.3-sa-cold ............................ Passed 0.45 sec +307/426 Test #438: Test_011.nanopore.3-sa-cold ............................ Passed 0.35 sec test 439 Start 439: Test_012.qualities @@ -11513,7 +11532,7 @@ 440: Test timeout computed to be: 1500 440: running 012.qualities-sa-hot 440: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities-sa-hot/load.stdout 2>./actual/012.qualities-sa-hot/load.stderr -309/426 Test #440: Test_012.qualities-sa-hot .............................. Passed 1.49 sec +309/426 Test #440: Test_012.qualities-sa-hot .............................. Passed 1.63 sec test 441 Start 441: Test_012.qualities-sa-cold @@ -11522,7 +11541,7 @@ 441: Test timeout computed to be: 1500 441: running 012.qualities-sa-cold 441: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities-sa-cold/load.stdout 2>./actual/012.qualities-sa-cold/load.stderr -310/426 Test #441: Test_012.qualities-sa-cold ............................. Passed 1.40 sec +310/426 Test #441: Test_012.qualities-sa-cold ............................. Passed 1.57 sec test 442 Start 442: Test_012.qualities_with_types-sa-hot @@ -11540,7 +11559,7 @@ 443: Test timeout computed to be: 1500 443: running 012.qualities_with_types-sa-cold 443: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --readTypes=TTB input/012.test_I1_001.fastq input/012.test_R1_001.fastq input/012.test_R2_001.fastq input/012.test2_I1_001.fastq input/012.test2_R1_001.fastq input/012.test2_R2_001.fastq 1>./actual/012.qualities_with_types-sa-cold/load.stdout 2>./actual/012.qualities_with_types-sa-cold/load.stderr -312/426 Test #443: Test_012.qualities_with_types-sa-cold .................. Passed 1.38 sec +312/426 Test #443: Test_012.qualities_with_types-sa-cold .................. Passed 1.39 sec test 444 Start 444: Test_013.no-reads @@ -11549,7 +11568,7 @@ 444: Test timeout computed to be: 1500 444: running 013.no-reads 444: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads/load.stdout 2>./actual/013.no-reads/load.stderr -313/426 Test #444: Test_013.no-reads ...................................... Passed 3.03 sec +313/426 Test #444: Test_013.no-reads ...................................... Passed 3.23 sec test 445 Start 445: Test_013.no-reads-sa-hot @@ -11558,7 +11577,7 @@ 445: Test timeout computed to be: 1500 445: running 013.no-reads-sa-hot 445: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads-sa-hot/load.stdout 2>./actual/013.no-reads-sa-hot/load.stderr -314/426 Test #445: Test_013.no-reads-sa-hot ............................... Passed 6.52 sec +314/426 Test #445: Test_013.no-reads-sa-hot ............................... Passed 5.75 sec test 446 Start 446: Test_013.no-reads-sa-cold @@ -11567,7 +11586,7 @@ 446: Test timeout computed to be: 1500 446: running 013.no-reads-sa-cold 446: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly --hot-reads-threshold 0 --max-err-count 0 input/013.t_I1.fastq input/013.t_I2.fastq input/013.t_R1.fastq input/013.t_R2.fastq 1>./actual/013.no-reads-sa-cold/load.stdout 2>./actual/013.no-reads-sa-cold/load.stderr -315/426 Test #446: Test_013.no-reads-sa-cold .............................. Passed 8.45 sec +315/426 Test #446: Test_013.no-reads-sa-cold .............................. Passed 7.67 sec test 447 Start 447: Test_014.2files_bad_sequence @@ -11594,7 +11613,7 @@ 449: Test timeout computed to be: 1500 449: running 015.pending_spots-sa-hot 449: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq --debug --no-timestamp --spot-assembly input/015.R1.fq input/015.R2.fq 1>./actual/015.pending_spots-sa-hot/load.stdout 2>./actual/015.pending_spots-sa-hot/load.stderr -318/426 Test #449: Test_015.pending_spots-sa-hot .......................... Passed 0.65 sec +318/426 Test #449: Test_015.pending_spots-sa-hot .......................... Passed 0.74 sec test 450 Start 450: Test_015.pending_spots-sa-cold @@ -11623,7 +11642,7 @@ 452: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq input/001.R1.fastq 2>./actual/DbMetaSingleFile/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -T ./actual/DbMetaSingleFile/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaSingleFile/load.stdout 2>>./actual/DbMetaSingleFile/load.stderr 452: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase-meta.sh: line 96: ./actual/DbMetaSingleFile/db: Is a directory 452: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq input/001.R1.fastq 2>./actual/DbMetaSingleFile/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -T ./actual/DbMetaSingleFile/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaSingleFile/load.stdout 2>>./actual/DbMetaSingleFile/load.stderr -321/426 Test #452: Test_DbMetaSingleFile .................................. Passed 0.67 sec +321/426 Test #452: Test_DbMetaSingleFile .................................. Passed 0.77 sec test 453 Start 453: Test_DbMetaMultipleFiles @@ -11634,7 +11653,7 @@ 453: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq input/r1.fastq input/r2.fastq 2>./actual/DbMetaMultipleFiles/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -T ./actual/DbMetaMultipleFiles/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaMultipleFiles/load.stdout 2>>./actual/DbMetaMultipleFiles/load.stderr 453: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sharq/runtestcase-meta.sh: line 96: ./actual/DbMetaMultipleFiles/db: Is a directory 453: CMD=/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/sharq input/r1.fastq input/r2.fastq 2>./actual/DbMetaMultipleFiles/load.stderr | /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/general-loader -T ./actual/DbMetaMultipleFiles/db -I ./../../../libs/schema:./../../../../ncbi-vdb/interfaces 1>./actual/DbMetaMultipleFiles/load.stdout 2>>./actual/DbMetaMultipleFiles/load.stderr -322/426 Test #453: Test_DbMetaMultipleFiles ............................... Passed 0.88 sec +322/426 Test #453: Test_DbMetaMultipleFiles ............................... Passed 0.87 sec test 454 Start 454: Test_sra_sort_meta_copy @@ -11642,7 +11661,7 @@ 454: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/loaders/sra-sort 454: Test timeout computed to be: 1500 454: Files before.xml and after.xml are identical -323/426 Test #454: Test_sra_sort_meta_copy ................................ Passed 1.49 sec +323/426 Test #454: Test_sra_sort_meta_copy ................................ Passed 1.48 sec test 455 Start 455: Test_Align_samextract @@ -11734,7 +11753,7 @@ 455: Fuzz_Hangs (0 s) 455: 455: *** No errors detected (0 s total) -324/426 Test #455: Test_Align_samextract .................................. Passed 0.42 sec +324/426 Test #455: Test_Align_samextract .................................. Passed 0.39 sec test 457 Start 457: Test_Align_Cache @@ -11742,7 +11761,7 @@ 457: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/align-cache 457: Test timeout computed to be: 1500 457: testing align-cache -325/426 Test #457: Test_Align_Cache ....................................... Passed 0.31 sec +325/426 Test #457: Test_Align_Cache ....................................... Passed 0.30 sec test 458 Start 458: Test_KFF @@ -11918,7 +11937,7 @@ 463: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/make-read-filter 463: Test timeout computed to be: 1500 463: /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin /usr/lib/x86_64-linux-gnu /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/test-bin/tmp -331/426 Test #463: Test_MakeReadFilter .................................... Passed 0.52 sec +331/426 Test #463: Test_MakeReadFilter .................................... Passed 0.44 sec test 464 Start 464: Test_Read_filter_redact_Check_exit_code @@ -11926,7 +11945,7 @@ 464: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact 464: Test timeout computed to be: 1500 464: [check-exit-code.py] test passed for [/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/read-filter-redact] -332/426 Test #464: Test_Read_filter_redact_Check_exit_code ................ Passed 0.05 sec +332/426 Test #464: Test_Read_filter_redact_Check_exit_code ................ Passed 0.07 sec test 465 Start 465: Test_Read_filter_redact @@ -11934,7 +11953,7 @@ 465: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/read-filter-redact 465: Test timeout computed to be: 1500 465: Testing read-filter-redact from /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin -333/426 Test #465: Test_Read_filter_redact ................................ Passed 0.42 sec +333/426 Test #465: Test_Read_filter_redact ................................ Passed 0.33 sec test 466 Start 466: Test_VDB_Copy_Check_exit_code @@ -11949,7 +11968,7 @@ 468: Test command: /usr/bin/sh "-c" "./return_code_on_error.sh /build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin" 468: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/internal/vdb-copy 468: Test timeout computed to be: 1500 -468: 2026-09-05T20:24:14 vdb-copy.3.2.1 int: item not found while copying within virtual database module - the path 'NOT_EXISTING_DIR' cannot be opened as vdb-database or vdb-table +468: 2025-08-03T14:10:31 vdb-copy.3.2.1 int: item not found while copying within virtual database module - the path 'NOT_EXISTING_DIR' cannot be opened as vdb-database or vdb-table 468: SUCCESS: vdb-copy returned 3 if ask to copy a none-existing object. 335/426 Test #468: Test_VDB_Copy_Should_Fail_On_Invalid_Accession ......... Passed 0.04 sec test 470 @@ -12061,37 +12080,37 @@ 477: python3 found 477: /usr/bin/python3 477: Testing with default parameters. -477: progress: 100 records, per second: 61695.1 -477: progress: 100 records, per second: 17012.1 -477: progress: 100 records, per second: 30937 +477: progress: 100 records, per second: 33561.5 +477: progress: 100 records, per second: 17955.7 +477: progress: 100 records, per second: 24763.2 477: Testing with one biological read. -477: progress: 100 records, per second: 68231.6 -477: progress: 100 records, per second: 67146.6 -477: progress: 100 records, per second: 35861.8 +477: progress: 101 records, per second: 69223.7 +477: progress: 101 records, per second: 19361.3 +477: progress: 101 records, per second: 35122.3 477: Testing with one technical read. -477: progress: 100 records, per second: 62737.3 -477: progress: 100 records, per second: 18822.6 -477: progress: 100 records, per second: 57076.6 +477: progress: 100 records, per second: 63459.2 +477: progress: 100 records, per second: 19436.4 +477: progress: 100 records, per second: 30538.9 477: Testing with two biological read. -477: progress: 100 records, per second: 62218.2 -477: progress: 100 records, per second: 19836.6 -477: progress: 100 records, per second: 27329.7 +477: progress: 101 records, per second: 35487.6 +477: progress: 101 records, per second: 18791.9 +477: progress: 101 records, per second: 26519.8 477: Testing with one biological and one technical read. -477: progress: 100 records, per second: 53818.1 -477: progress: 100 records, per second: 15450.5 -477: progress: 100 records, per second: 30382.5 +477: progress: 101 records, per second: 58472.2 +477: progress: 101 records, per second: 17683.7 +477: progress: 101 records, per second: 30260.2 477: Testing with multiple layouts. -477: progress: 100 records, per second: 59144.7 -477: progress: 100 records, per second: 18249 -477: progress: 100 records, per second: 27615.1 -341/426 Test #477: Test_qa-stats .......................................... Passed 2.77 sec +477: progress: 101 records, per second: 59811.9 +477: progress: 101 records, per second: 17692.7 +477: progress: 101 records, per second: 29644.2 +341/426 Test #477: Test_qa-stats .......................................... Passed 1.02 sec test 478 Start 478: Test_qa_stats_001.R1.fastq 478: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/001.R1.fastq 1>actual/001.R1.fastq.stdout 2>actual/001.R1.fastq.stderr" 478: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 478: Test timeout computed to be: 1500 -342/426 Test #478: Test_qa_stats_001.R1.fastq ............................. Passed 0.00 sec +342/426 Test #478: Test_qa_stats_001.R1.fastq ............................. Passed 0.01 sec test 479 Start 479: Test_qa_stats_003.R1.fastq @@ -12147,7 +12166,7 @@ 486: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/009.test_R1_001.fastq 1>actual/009.test_R1_001.fastq.stdout 2>actual/009.test_R1_001.fastq.stderr" 486: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 486: Test timeout computed to be: 1500 -350/426 Test #486: Test_qa_stats_009.test_R1_001.fastq .................... Passed 0.01 sec +350/426 Test #486: Test_qa_stats_009.test_R1_001.fastq .................... Passed 0.02 sec test 487 Start 487: Test_qa_stats_009.test_R2_001.fastq @@ -12182,7 +12201,7 @@ 491: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/012.test2_R2_001.fastq 1>actual/012.test2_R2_001.fastq.stdout 2>actual/012.test2_R2_001.fastq.stderr" 491: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 491: Test timeout computed to be: 1500 -355/426 Test #491: Test_qa_stats_012.test2_R2_001.fastq ................... Passed 0.00 sec +355/426 Test #491: Test_qa_stats_012.test2_R2_001.fastq ................... Passed 0.01 sec test 492 Start 492: Test_qa_stats_012.test_I1_001.fastq @@ -12231,7 +12250,7 @@ 498: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/013.t_R2.fastq 1>actual/013.t_R2.fastq.stdout 2>actual/013.t_R2.fastq.stderr" 498: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 498: Test timeout computed to be: 1500 -362/426 Test #498: Test_qa_stats_013.t_R2.fastq ........................... Passed 0.45 sec +362/426 Test #498: Test_qa_stats_013.t_R2.fastq ........................... Passed 0.26 sec test 499 Start 499: Test_qa_stats_014.R1.fastq @@ -12280,7 +12299,7 @@ 505: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/10.0.fastq 1>actual/10.0.fastq.stdout 2>actual/10.0.fastq.stderr" 505: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 505: Test timeout computed to be: 1500 -369/426 Test #505: Test_qa_stats_10.0.fastq ............................... Passed 0.01 sec +369/426 Test #505: Test_qa_stats_10.0.fastq ............................... Passed 0.00 sec test 506 Start 506: Test_qa_stats_11.0.1.fasta @@ -12371,14 +12390,14 @@ 518: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/16.1.fastq 1>actual/16.1.fastq.stdout 2>actual/16.1.fastq.stderr" 518: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 518: Test timeout computed to be: 1500 -382/426 Test #518: Test_qa_stats_16.1.fastq ............................... Passed 0.00 sec +382/426 Test #518: Test_qa_stats_16.1.fastq ............................... Passed 0.01 sec test 519 Start 519: Test_qa_stats_17.0.fastq 519: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/17.0.fastq 1>actual/17.0.fastq.stdout 2>actual/17.0.fastq.stderr" 519: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 519: Test timeout computed to be: 1500 -383/426 Test #519: Test_qa_stats_17.0.fastq ............................... Passed 0.00 sec +383/426 Test #519: Test_qa_stats_17.0.fastq ............................... Passed 0.01 sec test 520 Start 520: Test_qa_stats_18.0.fastq @@ -12630,7 +12649,7 @@ 555: Test command: /usr/bin/sh "-c" "/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu/bin/qa-stats /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats/input/unaligned.fastq 1>actual/unaligned.fastq.stdout 2>actual/unaligned.fastq.stderr" 555: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/test-tools/qa-stats 555: Test timeout computed to be: 1500 -419/426 Test #555: Test_qa_stats_unaligned.fastq .......................... Passed 0.01 sec +419/426 Test #555: Test_qa_stats_unaligned.fastq .......................... Passed 0.00 sec test 556 Start 556: Test_qa_stats_Finger_1 @@ -12669,14 +12688,14 @@ 560: Test command: /usr/bin/perl "test-prepare-sra-names-py.pl" 560: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 560: Test timeout computed to be: 1500 -424/426 Test #560: Test_Scripts_prepare-sra-names-py ...................... Passed 0.46 sec +424/426 Test #560: Test_Scripts_prepare-sra-names-py ...................... Passed 0.41 sec test 561 Start 561: Test_Scripts_fix-sra-names-py 561: Test command: /usr/bin/perl "test-fix-sra-names-py.pl" 561: Working Directory: /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/scripts 561: Test timeout computed to be: 1500 -425/426 Test #561: Test_Scripts_fix-sra-names-py .......................... Passed 0.25 sec +425/426 Test #561: Test_Scripts_fix-sra-names-py .......................... Passed 0.24 sec test 562 Start 562: Test_GeneralWriterPy @@ -12687,7 +12706,7 @@ 100% tests passed, 0 tests failed out of 426 -Total Test time (real) = 128.58 sec +Total Test time (real) = 127.49 sec make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake @@ -12698,7 +12717,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' dh_auto_install - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/sra-sdk-3.2.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/sra-sdk-3.2.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/sra-sdk-3.2.1+dfsg -B/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -12743,105 +12762,105 @@ -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-ngs.so.3 -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libncbi-ngs.so -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Read.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReferenceSequence.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReferenceIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/PileupEvent.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/PileupIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Statistics.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Package.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/x86_64 +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/x86_64/atomic32.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/arm64 +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/arm64/atomic32.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/fat86 +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/fat86/atomic32.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/i386 +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/i386/atomic32.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/win +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/win/stdbool.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/win/atomic32.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Reference.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/PileupEventItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/StringItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReadCollectionItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/defs.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceSequenceItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/StatisticsItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/defs.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/FragmentItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/PileupEventItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReadItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ErrorMsg.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/PileupItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReadGroupItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/AlignmentItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/Refcount.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Package.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/win --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/win/atomic32.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/win/stdbool.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadCollection.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Reference.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/StringRef.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/FragmentIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/AlignmentIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadGroup.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/AlignmentItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/StatisticsItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ErrorMsg.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReadGroupItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/adapter/ReferenceItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/PileupIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Alignment.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Fragment.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ErrorMsg.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadGroup.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadGroupIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Read.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReferenceSequence.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReferenceIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/PileupEvent.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/PileupIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Statistics.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Package.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReadCollection.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Reference.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/StringRef.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/FragmentIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/AlignmentIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReadGroup.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/PileupIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Alignment.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReadGroup.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReadGroupIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/AlignmentIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Fragment.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReadIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/PileupEventIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReferenceSequence.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/FragmentIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/StringRef.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReferenceIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/PileupEvent.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Pileup.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReadGroupIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReadCollection.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/PileupEventIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/ReadIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Read.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/inl/Statistics.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/AlignmentIterator.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/Refcount.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PileupEventItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/StringItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadCollectionItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PileupEventItf.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/AlignmentItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ErrBlock.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ErrBlock.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceItf.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadCollectionItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/VTable.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/FragmentItf.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/defs.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/StringItf.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PileupItf.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceSequenceItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/defs.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/FragmentItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/StatisticsItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/StringItf.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/VTable.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PackageItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PileupItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/Refcount.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/AlignmentItf.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/StatisticsItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceSequenceItf.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PileupEventItf.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/FragmentItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/VTable.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PileupEventItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ErrBlock.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadCollectionItf.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ErrorMsg.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadCollectionItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PileupItf.h +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/Refcount.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadGroupItf.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PileupItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/PackageItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceSequenceItf.h -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReadGroupItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/AlignmentItf.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ErrBlock.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/Refcount.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadIterator.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/i386 --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/i386/atomic32.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/fat86 --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/fat86/atomic32.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/x86_64 --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/x86_64/atomic32.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/arm64 --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/unix/arm64/atomic32.h --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/PileupEventIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/itf/ReferenceItf.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Fragment.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReferenceSequence.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/FragmentIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/StringRef.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReferenceIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/PileupEvent.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Pileup.hpp --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadGroupIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadCollection.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/PileupEventIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ErrorMsg.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/ReadIterator.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Read.hpp +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/include/ngs/Statistics.hpp -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/jar/ngs-java.jar -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples-java/examples/AlignTest.java -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples-java/examples/AlignSliceTest.java @@ -12855,70 +12874,70 @@ -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples-java/expected.txt -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/jar/ngs-examples.jar -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-ui.min.js --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-3.7.1.min.js --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-ui.min.css +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script.js -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/tag-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources/x.png +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources/glass.png -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search.html --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script.js --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/constant-values.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search-page.js +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/member-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/type-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/link.svg +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/overview-tree.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/package-search-index.js +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/allclasses-index.html -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/copy.svg --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/search.js +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/constant-values.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Fragment.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadCollection.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ErrorMsg.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/PileupIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Package.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/PileupEventIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Read.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Alignment.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/FragmentIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Statistics.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/AlignmentIterator.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReferenceSequence.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/PileupEvent.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/package-summary.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadGroup.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReferenceIterator.html +-- Installing: 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Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/stylesheet.css +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/element-list -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/allpackages-index.html --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReadCollection.html --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/Fragment.html --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ErrorMsg.html --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/ngs/ReferenceSequence.html --- Installing: 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/build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources/x.png --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/resources/glass.png --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/link.svg +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/index-all.html -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal/jqueryUI.md -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal/ASSEMBLY_EXCEPTION -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal/jquery.md --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/legal/jqueryUI.md --- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/index-all.html +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-3.7.1.min.js +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-ui.min.js +-- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/javadoc/ngs-doc/script-dir/jquery-ui.min.css -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/jar/ngs-doc.jar -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/jar/ngs-src.jar -- Installing: /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/tmp/usr/share/examples-python/AlignTest.py @@ -13230,247 +13249,247 @@ done ls -l debian/tmp/usr/bin total 118844 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 abi-dump -> abi-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 abi-dump.3 -> abi-dump.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 269512 Sep 5 08:17 abi-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 abi-load -> abi-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 abi-load.3 -> abi-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 807504 Sep 5 08:18 abi-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 align-cache -> align-cache.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Sep 5 08:24 align-cache.3 -> align-cache.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 249680 Sep 5 08:18 align-cache.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 align-info -> align-info.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 align-info.3 -> align-info.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 97320 Sep 5 08:18 align-info.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 bam-load -> bam-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 bam-load.3 -> bam-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 14124856 Sep 5 08:19 bam-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Sep 5 08:24 cache-mgr -> cache-mgr.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 cache-mgr.3 -> cache-mgr.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 124728 Sep 5 08:18 cache-mgr.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Sep 5 08:24 ccextract -> ccextract.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 ccextract.3 -> ccextract.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 272968 Sep 5 08:18 ccextract.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Sep 5 08:24 cg-load -> cg-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 cg-load.3 -> cg-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 657864 Sep 5 08:18 cg-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 check-corrupt -> check-corrupt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Sep 5 08:24 check-corrupt.3 -> check-corrupt.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 247200 Sep 5 08:18 check-corrupt.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 check-redact -> check-redact.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 check-redact.3 -> check-redact.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 97880 Sep 5 08:18 check-redact.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 compute-coverage -> compute-coverage.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 Sep 5 08:24 compute-coverage-ngs -> compute-coverage-ngs.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 26 Sep 5 08:24 compute-coverage-ngs.3 -> compute-coverage-ngs.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2224928 Sep 5 08:18 compute-coverage-ngs.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 Sep 5 08:24 compute-coverage.3 -> compute-coverage.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 131184 Sep 5 08:18 compute-coverage.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Sep 5 08:24 copycat -> copycat.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 copycat.3 -> copycat.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 484072 Sep 5 08:18 copycat.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 crc32sum -> crc32sum.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 crc32sum.3 -> crc32sum.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 79432 Sep 5 08:18 crc32sum.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 Sep 5 08:24 dump-blob-boundaries -> dump-blob-boundaries.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 26 Sep 5 08:24 dump-blob-boundaries.3 -> dump-blob-boundaries.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 31600 Sep 5 08:18 dump-blob-boundaries.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 dump-ref-fasta -> dump-ref-fasta.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Sep 5 08:24 dump-ref-fasta.3 -> dump-ref-fasta.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2098080 Sep 5 08:18 dump-ref-fasta.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 fastconv -> fastconv.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 fastconv.3 -> fastconv.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 5042992 Sep 5 08:19 fastconv.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 fasterq-dump -> fasterq-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 1016680 Sep 5 08:18 fasterq-dump-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 fasterq-dump.3 -> fasterq-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 fasterq-dump.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 fastq-dump -> fastq-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 349696 Sep 5 08:17 fastq-dump-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 fastq-dump.3 -> fastq-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 fastq-dump.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 fastq-load -> fastq-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 fastq-load.3 -> fastq-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 859400 Sep 5 08:18 fastq-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 general-loader -> general-loader.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Sep 5 08:24 general-loader.3 -> general-loader.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 1646960 Sep 5 08:18 general-loader.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 helicos-load -> helicos-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 helicos-load.3 -> helicos-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 769640 Sep 5 08:18 helicos-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 illumina-dump -> illumina-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Sep 5 08:24 illumina-dump.3 -> illumina-dump.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 255616 Sep 5 08:17 illumina-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 illumina-load -> illumina-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Sep 5 08:24 illumina-load.3 -> illumina-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 819896 Sep 5 08:18 illumina-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 5 Sep 5 08:24 kar -> kar.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 6 Sep 5 08:24 kar+ -> kar+.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 kar+.3 -> kar+.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 237544 Sep 5 08:18 kar+.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 kar+meta -> kar+meta.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 kar+meta.3 -> kar+meta.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 159056 Sep 5 08:18 kar+meta.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Sep 5 08:24 kar.3 -> kar.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 190712 Sep 5 08:18 kar.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Sep 5 08:24 kdb-index -> kdb-index.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 kdb-index.3 -> kdb-index.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 78448 Sep 5 08:18 kdb-index.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Sep 5 08:24 kdbmeta -> kdbmeta.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 kdbmeta.3 -> kdbmeta.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 123624 Sep 5 08:17 kdbmeta.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Sep 5 08:24 latf-load -> latf-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 latf-load.3 -> latf-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 508272 Sep 5 08:18 latf-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 make-read-filter -> make-read-filter.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 22 Sep 5 08:24 make-read-filter.3 -> make-read-filter.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 158768 Sep 5 08:18 make-read-filter.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 7 Sep 5 08:24 md5cp -> md5cp.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Sep 5 08:24 md5cp.3 -> md5cp.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 89720 Sep 5 08:18 md5cp.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 meta-cmp -> meta-cmp.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 meta-cmp.3 -> meta-cmp.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 82024 Sep 5 08:18 meta-cmp.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Sep 5 08:24 meta-copy -> meta-copy.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 meta-copy.3 -> meta-copy.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 81952 Sep 5 08:18 meta-copy.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 meta-repair -> meta-repair.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Sep 5 08:24 meta-repair.3 -> meta-repair.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 136048 Sep 5 08:18 meta-repair.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 ngs-pileup -> ngs-pileup.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 ngs-pileup.3 -> ngs-pileup.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2608704 Sep 5 08:18 ngs-pileup.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 pacbio-correct -> pacbio-correct.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Sep 5 08:24 pacbio-correct.3 -> pacbio-correct.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 76024 Sep 5 08:18 pacbio-correct.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 pacbio-load -> pacbio-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Sep 5 08:24 pacbio-load.3 -> pacbio-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 476952 Sep 5 08:18 pacbio-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 pacbio-loadxml -> pacbio-loadxml.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Sep 5 08:24 pacbio-loadxml.3 -> pacbio-loadxml.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 757368 Sep 5 08:18 pacbio-loadxml.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 pileup-stats -> pileup-stats.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 pileup-stats.3 -> pileup-stats.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2848488 Sep 5 08:18 pileup-stats.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 prefetch -> prefetch.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 479464 Sep 5 08:17 prefetch-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 prefetch.3 -> prefetch.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 prefetch.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Sep 5 08:24 rcexplain -> rcexplain.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 rcexplain.3 -> rcexplain.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 67456 Sep 5 08:18 rcexplain.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Sep 5 08:24 read-filter-redact -> read-filter-redact.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 24 Sep 5 08:24 read-filter-redact.3 -> read-filter-redact.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 111192 Sep 5 08:18 read-filter-redact.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 ref-variation -> ref-variation.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Sep 5 08:24 ref-variation.3 -> ref-variation.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 3020016 Sep 5 08:18 ref-variation.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 rowwritetest -> rowwritetest.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 rowwritetest.3 -> rowwritetest.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 88592 Sep 5 08:18 rowwritetest.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 sam-dump -> sam-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 834512 Sep 5 08:18 sam-dump-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sam-dump.3 -> sam-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sam-dump.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Sep 5 08:24 samview -> samview.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 samview-util -> samview-util.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 samview-util.3 -> samview-util.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 64176 Sep 5 08:18 samview-util.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 samview.3 -> samview.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 305696 Sep 5 08:18 samview.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 schema-replace -> schema-replace.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 20 Sep 5 08:24 schema-replace.3 -> schema-replace.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 82928 Sep 5 08:18 schema-replace.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 sff-dump -> sff-dump.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sff-dump.3 -> sff-dump.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 234512 Sep 5 08:17 sff-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 sff-load -> sff-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sff-load.3 -> sff-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 818504 Sep 5 08:18 sff-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 7 Sep 5 08:24 sharq -> sharq.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 11 Sep 5 08:24 sharq.3 -> sharq.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 44902232 Sep 5 08:20 sharq.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sortreadtest -> sortreadtest.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 sortreadtest.3 -> sortreadtest.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 79784 Sep 5 08:18 sortreadtest.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 sra-info -> sra-info.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sra-info.3 -> sra-info.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2904864 Sep 5 08:18 sra-info.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 sra-pileup -> sra-pileup.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 443160 Sep 5 08:18 sra-pileup-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 sra-pileup.3 -> sra-pileup.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sra-pileup.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 sra-search -> sra-search.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 sra-search.3 -> sra-search.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 4340304 Sep 5 08:18 sra-search.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 sra-sort -> sra-sort.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 sra-sort-cg -> sra-sort-cg.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Sep 5 08:24 sra-sort-cg.3 -> sra-sort-cg.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 808784 Sep 5 08:18 sra-sort-cg.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sra-sort.3 -> sra-sort.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 808816 Sep 5 08:18 sra-sort.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 sra-stat -> sra-stat.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sra-stat.3 -> sra-stat.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 347472 Sep 5 08:18 sra-stat.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Sep 5 08:24 srapath -> srapath.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 256120 Sep 5 08:18 srapath-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 srapath.3 -> srapath.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 srapath.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 sratools -> sratools.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 sratools.3 -> sratools.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 5476344 Sep 5 08:18 sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 srf-load -> srf-load.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 srf-load.3 -> srf-load.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 999560 Sep 5 08:18 srf-load.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 15 Sep 5 08:24 test-download -> test-download.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 19 Sep 5 08:24 test-download.3 -> test-download.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 93648 Sep 5 08:18 test-download.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 24 Sep 5 08:24 test-read-write-cursor -> test-read-write-cursor.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 28 Sep 5 08:24 test-read-write-cursor.3 -> test-read-write-cursor.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 75488 Sep 5 08:18 test-read-write-cursor.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 test-sra -> test-sra.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 test-sra.3 -> test-sra.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 343496 Sep 5 08:18 test-sra.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 8 Sep 5 08:24 testld -> testld.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 testld.3 -> testld.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 76472 Sep 5 08:18 testld.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Sep 5 08:24 txt2kdb -> txt2kdb.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 txt2kdb.3 -> txt2kdb.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 83256 Sep 5 08:18 txt2kdb.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 var-expand -> var-expand.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 var-expand.3 -> var-expand.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2049376 Sep 5 08:18 var-expand.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 vdb-config -> vdb-config.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 vdb-config.3 -> vdb-config.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 2655424 Sep 5 08:18 vdb-config.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 vdb-copy -> vdb-copy.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 vdb-copy.3 -> vdb-copy.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 329728 Sep 5 08:18 vdb-copy.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 vdb-decrypt -> vdb-decrypt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Sep 5 08:24 vdb-decrypt.3 -> vdb-decrypt.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 121584 Sep 5 08:17 vdb-decrypt.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 vdb-diff -> vdb-diff.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 vdb-diff.3 -> vdb-diff.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 155224 Sep 5 08:18 vdb-diff.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 vdb-dump -> vdb-dump.3 --rwxr-xr-x 1 pbuilder1 pbuilder1 887840 Sep 5 08:18 vdb-dump-orig.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 vdb-dump.3 -> vdb-dump.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 vdb-dump.3.2.1 -> sratools.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 vdb-encrypt -> vdb-encrypt.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 17 Sep 5 08:24 vdb-encrypt.3 -> vdb-encrypt.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 119960 Sep 5 08:18 vdb-encrypt.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 10 Sep 5 08:24 vdb-lock -> vdb-lock.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 vdb-lock.3 -> vdb-lock.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 68336 Sep 5 08:17 vdb-lock.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 9 Sep 5 08:24 vdb-sql -> vdb-sql.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 13 Sep 5 08:24 vdb-sql.3 -> vdb-sql.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 5296480 Sep 5 08:19 vdb-sql.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 12 Sep 5 08:24 vdb-unlock -> vdb-unlock.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 16 Sep 5 08:24 vdb-unlock.3 -> vdb-unlock.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 68344 Sep 5 08:17 vdb-unlock.3.2.1 -lrwxrwxrwx 1 pbuilder1 pbuilder1 14 Sep 5 08:24 vdb-validate -> vdb-validate.3 -lrwxrwxrwx 1 pbuilder1 pbuilder1 18 Sep 5 08:24 vdb-validate.3 -> vdb-validate.3.2.1 --rwxr-xr-x 1 pbuilder1 pbuilder1 261640 Sep 5 08:18 vdb-validate.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 abi-dump -> abi-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 abi-dump.3 -> abi-dump.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 269512 Aug 4 04:04 abi-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 abi-load -> abi-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 abi-load.3 -> abi-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 807504 Aug 4 04:04 abi-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 align-cache -> align-cache.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Aug 4 04:10 align-cache.3 -> align-cache.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 249680 Aug 4 04:04 align-cache.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 align-info -> align-info.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 align-info.3 -> align-info.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 97320 Aug 4 04:04 align-info.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 bam-load -> bam-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 bam-load.3 -> bam-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 14124856 Aug 4 04:05 bam-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Aug 4 04:10 cache-mgr -> cache-mgr.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 cache-mgr.3 -> cache-mgr.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 124728 Aug 4 04:04 cache-mgr.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Aug 4 04:10 ccextract -> ccextract.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 ccextract.3 -> ccextract.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 272968 Aug 4 04:04 ccextract.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Aug 4 04:10 cg-load -> cg-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 cg-load.3 -> cg-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 657864 Aug 4 04:04 cg-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 check-corrupt -> check-corrupt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Aug 4 04:10 check-corrupt.3 -> check-corrupt.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 247200 Aug 4 04:04 check-corrupt.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 check-redact -> check-redact.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 check-redact.3 -> check-redact.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 97880 Aug 4 04:04 check-redact.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 compute-coverage -> compute-coverage.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Aug 4 04:10 compute-coverage-ngs -> compute-coverage-ngs.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 26 Aug 4 04:10 compute-coverage-ngs.3 -> compute-coverage-ngs.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2224928 Aug 4 04:04 compute-coverage-ngs.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Aug 4 04:10 compute-coverage.3 -> compute-coverage.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 131184 Aug 4 04:04 compute-coverage.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Aug 4 04:10 copycat -> copycat.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 copycat.3 -> copycat.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 484072 Aug 4 04:04 copycat.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 crc32sum -> crc32sum.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 crc32sum.3 -> crc32sum.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 79432 Aug 4 04:04 crc32sum.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Aug 4 04:10 dump-blob-boundaries -> dump-blob-boundaries.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 26 Aug 4 04:10 dump-blob-boundaries.3 -> dump-blob-boundaries.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 31600 Aug 4 04:04 dump-blob-boundaries.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 dump-ref-fasta -> dump-ref-fasta.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Aug 4 04:10 dump-ref-fasta.3 -> dump-ref-fasta.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2098080 Aug 4 04:04 dump-ref-fasta.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 fastconv -> fastconv.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 fastconv.3 -> fastconv.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5042992 Aug 4 04:05 fastconv.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 fasterq-dump -> fasterq-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1016680 Aug 4 04:04 fasterq-dump-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 fasterq-dump.3 -> fasterq-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 fasterq-dump.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 fastq-dump -> fastq-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 349696 Aug 4 04:04 fastq-dump-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 fastq-dump.3 -> fastq-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 fastq-dump.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 fastq-load -> fastq-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 fastq-load.3 -> fastq-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 859400 Aug 4 04:04 fastq-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 general-loader -> general-loader.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Aug 4 04:10 general-loader.3 -> general-loader.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 1646960 Aug 4 04:04 general-loader.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 helicos-load -> helicos-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 helicos-load.3 -> helicos-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 769640 Aug 4 04:04 helicos-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 illumina-dump -> illumina-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Aug 4 04:10 illumina-dump.3 -> illumina-dump.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 255616 Aug 4 04:04 illumina-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 illumina-load -> illumina-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Aug 4 04:10 illumina-load.3 -> illumina-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 819896 Aug 4 04:04 illumina-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 5 Aug 4 04:10 kar -> kar.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 6 Aug 4 04:10 kar+ -> kar+.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 kar+.3 -> kar+.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 237544 Aug 4 04:04 kar+.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 kar+meta -> kar+meta.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 kar+meta.3 -> kar+meta.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 159056 Aug 4 04:04 kar+meta.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Aug 4 04:10 kar.3 -> kar.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 190712 Aug 4 04:04 kar.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Aug 4 04:10 kdb-index -> kdb-index.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 kdb-index.3 -> kdb-index.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 78448 Aug 4 04:04 kdb-index.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Aug 4 04:10 kdbmeta -> kdbmeta.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 kdbmeta.3 -> kdbmeta.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 123624 Aug 4 04:04 kdbmeta.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Aug 4 04:10 latf-load -> latf-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 latf-load.3 -> latf-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 508272 Aug 4 04:04 latf-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 make-read-filter -> make-read-filter.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 22 Aug 4 04:10 make-read-filter.3 -> make-read-filter.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 158768 Aug 4 04:04 make-read-filter.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 7 Aug 4 04:10 md5cp -> md5cp.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Aug 4 04:10 md5cp.3 -> md5cp.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 89720 Aug 4 04:04 md5cp.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 meta-cmp -> meta-cmp.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 meta-cmp.3 -> meta-cmp.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 82024 Aug 4 04:04 meta-cmp.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Aug 4 04:10 meta-copy -> meta-copy.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 meta-copy.3 -> meta-copy.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 81952 Aug 4 04:04 meta-copy.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 meta-repair -> meta-repair.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Aug 4 04:10 meta-repair.3 -> meta-repair.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 136048 Aug 4 04:04 meta-repair.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 ngs-pileup -> ngs-pileup.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 ngs-pileup.3 -> ngs-pileup.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2608704 Aug 4 04:04 ngs-pileup.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 pacbio-correct -> pacbio-correct.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Aug 4 04:10 pacbio-correct.3 -> pacbio-correct.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 76024 Aug 4 04:04 pacbio-correct.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 pacbio-load -> pacbio-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Aug 4 04:10 pacbio-load.3 -> pacbio-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 476952 Aug 4 04:04 pacbio-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 pacbio-loadxml -> pacbio-loadxml.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Aug 4 04:10 pacbio-loadxml.3 -> pacbio-loadxml.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 757368 Aug 4 04:04 pacbio-loadxml.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 pileup-stats -> pileup-stats.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 pileup-stats.3 -> pileup-stats.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2848488 Aug 4 04:04 pileup-stats.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 prefetch -> prefetch.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 479464 Aug 4 04:04 prefetch-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 prefetch.3 -> prefetch.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 prefetch.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Aug 4 04:10 rcexplain -> rcexplain.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 rcexplain.3 -> rcexplain.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 67456 Aug 4 04:04 rcexplain.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Aug 4 04:10 read-filter-redact -> read-filter-redact.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 24 Aug 4 04:10 read-filter-redact.3 -> read-filter-redact.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 111192 Aug 4 04:04 read-filter-redact.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 ref-variation -> ref-variation.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Aug 4 04:10 ref-variation.3 -> ref-variation.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 3020016 Aug 4 04:04 ref-variation.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 rowwritetest -> rowwritetest.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 rowwritetest.3 -> rowwritetest.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 88592 Aug 4 04:04 rowwritetest.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 sam-dump -> sam-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 834512 Aug 4 04:04 sam-dump-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sam-dump.3 -> sam-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sam-dump.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Aug 4 04:10 samview -> samview.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 samview-util -> samview-util.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 samview-util.3 -> samview-util.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 64176 Aug 4 04:04 samview-util.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 samview.3 -> samview.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 305696 Aug 4 04:04 samview.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 schema-replace -> schema-replace.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 20 Aug 4 04:10 schema-replace.3 -> schema-replace.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 82928 Aug 4 04:04 schema-replace.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 sff-dump -> sff-dump.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sff-dump.3 -> sff-dump.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 234512 Aug 4 04:04 sff-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 sff-load -> sff-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sff-load.3 -> sff-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 818504 Aug 4 04:04 sff-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 7 Aug 4 04:10 sharq -> sharq.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 11 Aug 4 04:10 sharq.3 -> sharq.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 44902232 Aug 4 04:07 sharq.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sortreadtest -> sortreadtest.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 sortreadtest.3 -> sortreadtest.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 79784 Aug 4 04:04 sortreadtest.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 sra-info -> sra-info.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sra-info.3 -> sra-info.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2904864 Aug 4 04:04 sra-info.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 sra-pileup -> sra-pileup.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 443160 Aug 4 04:04 sra-pileup-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 sra-pileup.3 -> sra-pileup.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sra-pileup.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 sra-search -> sra-search.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 sra-search.3 -> sra-search.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 4340304 Aug 4 04:04 sra-search.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 sra-sort -> sra-sort.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 sra-sort-cg -> sra-sort-cg.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Aug 4 04:10 sra-sort-cg.3 -> sra-sort-cg.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 808784 Aug 4 04:04 sra-sort-cg.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sra-sort.3 -> sra-sort.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 808816 Aug 4 04:04 sra-sort.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 sra-stat -> sra-stat.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sra-stat.3 -> sra-stat.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 347472 Aug 4 04:04 sra-stat.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Aug 4 04:10 srapath -> srapath.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 256120 Aug 4 04:04 srapath-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 srapath.3 -> srapath.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 srapath.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 sratools -> sratools.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 sratools.3 -> sratools.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5476344 Aug 4 04:04 sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 srf-load -> srf-load.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 srf-load.3 -> srf-load.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 999560 Aug 4 04:04 srf-load.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 15 Aug 4 04:10 test-download -> test-download.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 19 Aug 4 04:10 test-download.3 -> test-download.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 93648 Aug 4 04:04 test-download.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 24 Aug 4 04:10 test-read-write-cursor -> test-read-write-cursor.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 28 Aug 4 04:10 test-read-write-cursor.3 -> test-read-write-cursor.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 75488 Aug 4 04:04 test-read-write-cursor.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 test-sra -> test-sra.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 test-sra.3 -> test-sra.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 343496 Aug 4 04:04 test-sra.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 8 Aug 4 04:10 testld -> testld.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 testld.3 -> testld.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 76472 Aug 4 04:04 testld.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Aug 4 04:10 txt2kdb -> txt2kdb.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 txt2kdb.3 -> txt2kdb.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 83256 Aug 4 04:04 txt2kdb.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 var-expand -> var-expand.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 var-expand.3 -> var-expand.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2049376 Aug 4 04:04 var-expand.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 vdb-config -> vdb-config.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 vdb-config.3 -> vdb-config.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 2655424 Aug 4 04:04 vdb-config.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 vdb-copy -> vdb-copy.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 vdb-copy.3 -> vdb-copy.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 329728 Aug 4 04:04 vdb-copy.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 vdb-decrypt -> vdb-decrypt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Aug 4 04:10 vdb-decrypt.3 -> vdb-decrypt.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 121584 Aug 4 04:04 vdb-decrypt.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 vdb-diff -> vdb-diff.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 vdb-diff.3 -> vdb-diff.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 155224 Aug 4 04:04 vdb-diff.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 vdb-dump -> vdb-dump.3 +-rwxr-xr-x 1 pbuilder2 pbuilder2 887840 Aug 4 04:04 vdb-dump-orig.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 vdb-dump.3 -> vdb-dump.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 vdb-dump.3.2.1 -> sratools.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 vdb-encrypt -> vdb-encrypt.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 17 Aug 4 04:10 vdb-encrypt.3 -> vdb-encrypt.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 119960 Aug 4 04:04 vdb-encrypt.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 10 Aug 4 04:10 vdb-lock -> vdb-lock.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 vdb-lock.3 -> vdb-lock.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 68336 Aug 4 04:04 vdb-lock.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 9 Aug 4 04:10 vdb-sql -> vdb-sql.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 13 Aug 4 04:10 vdb-sql.3 -> vdb-sql.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 5296480 Aug 4 04:05 vdb-sql.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 12 Aug 4 04:10 vdb-unlock -> vdb-unlock.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 16 Aug 4 04:10 vdb-unlock.3 -> vdb-unlock.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 68344 Aug 4 04:04 vdb-unlock.3.2.1 +lrwxrwxrwx 1 pbuilder2 pbuilder2 14 Aug 4 04:10 vdb-validate -> vdb-validate.3 +lrwxrwxrwx 1 pbuilder2 pbuilder2 18 Aug 4 04:10 vdb-validate.3 -> vdb-validate.3.2.1 +-rwxr-xr-x 1 pbuilder2 pbuilder2 261640 Aug 4 04:04 vdb-validate.3.2.1 cd debian/tmp/usr/bin && \ for bin in *-orig.* ; do \ base=${bin%-orig.*} && \ @@ -13698,81 +13717,81 @@ running build running build_py creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/Alignment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/ReadGroupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/PileupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/Pileup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/ReadIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/FragmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Reference.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/String.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ReferenceIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/PileupEvent.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ReferenceSequence.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/String.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/ReadCollection.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/Pileup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/PileupEventIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/ReadIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Refcount.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/ReadGroup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/Fragment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/PileupEventIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/Package.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/__init__.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/Fragment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/ReadGroup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/PileupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/Read.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/Alignment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/AlignmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/LibChecker.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/ErrorMsg.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/Read.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/ReadCollection.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/LibChecker.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/LibManager.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs -copying ngs/Package.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/PileupEvent.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs copying ngs/Statistics.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs +copying ngs/ReadGroupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs running install_lib creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages creating /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Alignment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadGroupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Pileup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/FragmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Reference.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/String.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReferenceIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupEvent.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReferenceSequence.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/String.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadCollection.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Pileup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupEventIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Refcount.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadGroup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Fragment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupEventIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Package.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/__init__.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Fragment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadGroup.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Read.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Alignment.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/AlignmentIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/LibChecker.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ErrorMsg.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Read.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadCollection.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/LibChecker.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/LibManager.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Package.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/PileupEvent.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/Statistics.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Alignment.py to Alignment.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-313.pyc +copying /build/reproducible-path/sra-sdk-3.2.1+dfsg/.pybuild/cpython3_3.13_ngs/build/ngs/ReadGroupIterator.py -> /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Pileup.py to Pileup.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Reference.py to Reference.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/String.py to String.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/String.py to String.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Pileup.py to Pileup.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Refcount.py to Refcount.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Fragment.py to Fragment.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Package.py to Package.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Fragment.py to Fragment.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Read.py to Read.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Alignment.py to Alignment.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/LibChecker.py to LibChecker.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Read.py to Read.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/LibChecker.py to LibChecker.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/LibManager.py to LibManager.cpython-313.pyc -byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Package.py to Package.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-313.pyc byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/Statistics.py to Statistics.cpython-313.pyc +byte-compiling /build/reproducible-path/sra-sdk-3.2.1+dfsg/debian/python3-ngs/usr/lib/python3.13/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-313.pyc running install_egg_info running egg_info writing ngs.egg-info/PKG-INFO @@ -13785,7 +13804,7 @@ running install_scripts make[1]: Leaving directory '/build/reproducible-path/sra-sdk-3.2.1+dfsg' jh_installjavadoc -O--buildsystem=cmake -Duplicate specification "author|A=s" for option "A" +Duplicate specification "A" for option "A" dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installexamples @@ -13823,21 +13842,21 @@ dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake -dpkg-shlibdeps: warning: symbol KDataBufferResize used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VDatabaseRelease used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol ctx_what used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VCursorCloseRow used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VCursorGetBlob used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol KVectorSetBool used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VCursorOpen used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol xcColumnReadFailed used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries -dpkg-shlibdeps: warning: symbol VCursorSetRowId used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KMDataNodeReadAsU64 used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: symbol VCursorCellDataDirect used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol VTableCreateCursorRead used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol VFSManagerMakePath used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol xcColumnReadFailed used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol xcUnexpected used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol VBlobCellData used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KRepositoryMgrRelease used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries +dpkg-shlibdeps: warning: symbol KDBManagerRelease used by debian/libngs-c++3/usr/lib/x86_64-linux-gnu/libngs-c++.so.3.2.1 found in none of the libraries dpkg-shlibdeps: warning: 133 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake -dpkg-gencontrol: warning: package libncbi-ngs-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package libngs-jni: substitution variable ${shlibs:Depends} used, but is not defined +dpkg-gencontrol: warning: package libncbi-ngs-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'sra-toolkit' in '../sra-toolkit_3.2.1+dfsg-4_amd64.deb'. @@ -13859,12 +13878,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1911356/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1911356/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3515081 and its subdirectories -I: Current time: Sat Sep 5 08:25:03 -12 2026 -I: pbuilder-time-stamp: 1788639903 +I: removing directory /srv/workspace/pbuilder/1911356 and its subdirectories +I: Current time: Mon Aug 4 04:11:13 +14 2025 +I: pbuilder-time-stamp: 1754230273