Diff of the two buildlogs: -- --- b1/build.log 2025-03-09 20:57:06.331895047 +0000 +++ b2/build.log 2025-03-09 21:04:31.883871546 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 9 07:31:23 -12 2025 -I: pbuilder-time-stamp: 1741548683 +I: Current time: Sun Apr 12 17:20:09 +14 2026 +I: pbuilder-time-stamp: 1775964009 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying 0004-Patch-to-use-libpwizlite-and-libhts-from-the-system.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/490930/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/544631/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 12 03:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/544631/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/544631/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='727a74ed3edd4bc2ac94562f791d849b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='490930' - PS1='# ' - PS2='> ' + INVOCATION_ID=21c163ead6c14d5c82c0c273355f124a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=544631 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZC8SHqvB/pbuilderrc_PIB2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZC8SHqvB/b1 --logfile b1/build.log toppic_1.5.3+dfsg1-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZC8SHqvB/pbuilderrc_UaHb --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZC8SHqvB/b2 --logfile b2/build.log toppic_1.5.3+dfsg1-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/490930/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/544631/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -441,7 +473,7 @@ Get: 283 http://deb.debian.org/debian trixie/main amd64 qt5-qmake amd64 5.15.15+dfsg-4 [224 kB] Get: 284 http://deb.debian.org/debian trixie/main amd64 qtbase5-dev-tools amd64 5.15.15+dfsg-4 [778 kB] Get: 285 http://deb.debian.org/debian trixie/main amd64 qtbase5-dev amd64 5.15.15+dfsg-4 [1123 kB] -Fetched 178 MB in 18s (10.1 MB/s) +Fetched 178 MB in 8s (21.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) @@ -1374,8 +1406,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Mar 9 19:38:47 UTC 2025. -Universal Time is now: Sun Mar 9 19:38:47 UTC 2025. +Local time is now: Sun Apr 12 03:21:36 UTC 2026. +Universal Time is now: Sun Apr 12 03:21:36 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-4.1) ... @@ -1614,7 +1646,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes +I: user script /srv/workspace/pbuilder/544631/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/544631/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes dpkg-buildpackage: info: source package toppic dpkg-buildpackage: info: source version 1.5.3+dfsg1-1 dpkg-buildpackage: info: source distribution unstable @@ -1701,8 +1737,8 @@ -- HtsLib_INCLUDE_DIRS: /usr/include -- HtsLib_LIBRARIES: hts -- cmake cxx flags -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=$ORIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX --- Configuring done (9.5s) --- Generating done (10.1s) +-- Configuring done (0.6s) +-- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: @@ -1718,1156 +1754,392 @@ -- Build files have been written to: /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/toppic-1.5.3+dfsg1 -B/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/depend -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make 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/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/depend -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/depend +make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/depend +make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/depend +make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/depend -make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/depend +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/depend cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build +[ 0%] Built target topfd_autogen_timestamp_deps +make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -[ 0%] Built target topfd_gui_autogen_timestamp_deps -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build +make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build +[ 0%] Built target topfd_gui_autogen_timestamp_deps +make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/build -[ 0%] Built target topindex_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmerge_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build +make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build -[ 0%] Built target topfd_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topmerge_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topconvert_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -[ 0%] Built target toppic_gui_autogen_timestamp_deps -[ 0%] Built target toppic_autogen_timestamp_deps -[ 0%] Built target topindex_gui_autogen_timestamp_deps -[ 0%] Built target topmg_autogen_timestamp_deps -make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" +[ 0%] Built target topindex_gui_autogen_timestamp_deps +[ 0%] Built target topindex_autogen_timestamp_deps make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend -[ 0%] Built target topdiff_autogen_timestamp_deps -[ 0%] Built target topmerge_autogen_timestamp_deps -[ 0%] Built target topmg_gui_autogen_timestamp_deps +make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" +[ 0%] Built target topmg_autogen_timestamp_deps +[ 0%] Built target topmg_gui_autogen_timestamp_deps +[ 0%] Built target toppic_autogen_timestamp_deps +[ 0%] Built target toppic_gui_autogen_timestamp_deps [ 0%] Built target topdiff_gui_autogen_timestamp_deps +[ 0%] Built target topdiff_autogen_timestamp_deps +make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend +[ 0%] Built target topmerge_gui_autogen_timestamp_deps +[ 0%] Built target topmerge_autogen_timestamp_deps +[ 0%] Built target topconvert_autogen_timestamp_deps +make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend +make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend +make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend +make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend +make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend -[ 0%] Built target topmerge_gui_autogen_timestamp_deps +make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend -[ 0%] Built target topconvert_autogen_timestamp_deps +make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topmerge_gui_autogen.dir/build.make 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and UIC for target topfd make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topfd_gui_autogen.dir/build.make 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make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -[ 0%] Automatic MOC and UIC for target topindex make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build +make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build [ 0%] Automatic MOC and UIC for target topfd_gui -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenInfo.json release +make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build +make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build -[ 0%] Automatic MOC and UIC for target topfd make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release -make[3]: Leaving directory 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +[ 0%] Automatic MOC and UIC for target topindex +[ 0%] Automatic MOC and UIC for target topindex_gui +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release +[ 0%] Automatic 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-I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoMoc: Generating 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Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing 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"SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing 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-AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.h" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.h" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenInfo.json release +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/console/topindex.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topfd.cpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" @@ -2875,468 +2147,141 @@ AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing 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Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" -AutoGen: Parsing 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-AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing 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"SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topindex_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topindex_autogen/deps" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/deps" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topfd_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topfd_autogen/deps" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" -AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" -AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" -AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" +AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/timestamp +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" @@ -3344,22 +2289,23 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.hpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" -AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" @@ -3367,8 +2313,10 @@ AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" @@ -3376,9 +2324,11 @@ AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" @@ -3390,38 +2340,39 @@ AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" @@ -3431,23 +2382,10 @@ AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/timestamp -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.ui -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/timestamp -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/timestamp -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" @@ -3466,3148 +2404,4307 @@ AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu +AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" +AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/console/topindex.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topindex_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topindex_autogen/deps" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/console/topmerge.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" +AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/timestamp AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: 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AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing 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"SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.h" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" 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"SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" +AutoGen: Parsing 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"SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" 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Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: 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Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: 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"SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.h" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h -AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.ui -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.h" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/deps" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" -AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.h" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing 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"SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: 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+AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" 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Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing 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"SRC:/src/prsm/simple_prsm.hpp" -[ 1%] Built target topdiff_autogen -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/timestamp -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing 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"SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing 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-AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing 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AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing 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+AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/toppic_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/toppic_autogen/deps" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" +AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.ui +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.h -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui -make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/depend -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.h -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/threadtopmerge.h -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmerge_autogen/deps" AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.ui -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/threadtopmerge.h +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.h -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topdiff_autogen/deps" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.h +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.h +AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/mocs_compilation.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmg_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmg_autogen/deps" +AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topconvert_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/ParseCache.txt" +AutoUic: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.ui +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h +AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" +AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/14 -I/usr/include/x86_64-linux-gnu/c++/14 -I/usr/include/c++/14/backward -I/usr/lib/gcc/x86_64-linux-gnu/14/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h +AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/ParseCache.txt" +AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" +AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenUsed.txt" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/ParseCache.txt" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff.dir/DependInfo.cmake "--color=" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/ParseCache.txt" [ 1%] Built target topfd_autogen -[ 1%] Built target topindex_autogen -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/timestamp +AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/timestamp +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/timestamp make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/depend +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend -Dependencies file "topdiff_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff.dir/compiler_depend.internal". +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/timestamp +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/timestamp make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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compiler generated dependencies of target toppic -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/build +Consolidate compiler generated dependencies of target topmg Consolidate compiler generated dependencies of target topmerge +Consolidate compiler generated dependencies of target topfd +Consolidate compiler generated dependencies of target topconvert +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f CMakeFiles/topindex.dir/build.make 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 1%] Building CXX object CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o -MF CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o.d -o CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge.cpp AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp.d" +AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp.d" +AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp.d" +AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topmerge_gui_autogen/deps" +AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt" +AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/timestamp +AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/deps" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/deps" -[ 2%] Built target topindex_gui_autogen -make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/depend +AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/timestamp AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/timestamp +AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" +AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/deps" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/timestamp -[ 2%] Automatic RCC for src/gui/topindex/icon.qrc -/usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutoRcc_icon_PJRF6ORA5X_Info.json release -[ 2%] Built target topfd_gui_autogen -make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/depend +AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -[ 2%] Built target topdiff_gui_autogen -[ 2%] Built target topmerge_gui_autogen -make -f CMakeFiles/topdiff_gui.dir/build.make CMakeFiles/topdiff_gui.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -[ 2%] Automatic RCC for src/gui/topfd/icon.qrc -/usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Info.json release -AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/icon.qrc" -/usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/icon.qrc -[ 2%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_argument.cpp -[ 2%] Automatic RCC for src/gui/topdiff/icon.qrc -/usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutoRcc_icon_4YKSSMFELI_Info.json release -AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutoRcc_icon_PJRF6ORA5X_Used.txt" -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui.dir/DependInfo.cmake "--color=" -AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/icon.qrc" -/usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/icon.qrc -AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutoRcc_icon_4YKSSMFELI_Used.txt" -AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/icon.qrc" -/usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/icon.qrc -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui.dir/DependInfo.cmake "--color=" -AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Used.txt" -Dependencies file "topindex_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui.dir/compiler_depend.internal". -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui.dir/DependInfo.cmake "--color=" -Consolidate compiler generated dependencies of target topindex_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/build -Dependencies file "topdiff_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui.dir/compiler_depend.internal". -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -Consolidate compiler generated dependencies of target topdiff_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/topdiff_gui.dir/build.make CMakeFiles/topdiff_gui.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -[ 3%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp -Dependencies file "topfd_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui.dir/compiler_depend.internal". -[ 3%] Building CXX object CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp -Consolidate compiler generated dependencies of target topfd_gui +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/timestamp +[ 1%] Built target 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/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/icon.qrc +AutoRcc: Generating "SRC:/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/icon.qrc" +/usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/icon.qrc +AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutoRcc_icon_PJRF6ORA5X_Used.txt" AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutoRcc_icon_FNASZ5VCWY_Used.txt" +AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Used.txt" +AutoRcc: Writing settings file "SRC:/obj-x86_64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutoRcc_icon_4YKSSMFELI_Used.txt" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/topindex_gui.dir/DependInfo.cmake "--color=" +[ 2%] Built target toppic_gui_autogen cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp Consolidate compiler generated dependencies of target topmerge_gui +Consolidate compiler generated dependencies of target topdiff_gui +Consolidate compiler generated dependencies of target topfd_gui +Consolidate compiler generated dependencies of target topindex_gui +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +make -f 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp +make -f CMakeFiles/topmg_gui.dir/build.make CMakeFiles/topmg_gui.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -6615,12 +6712,90 @@ from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd.cpp:16: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_argument.cpp +[ 5%] Building CXX object CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, + from /usr/include/boost/system/detail/config.hpp:11, + from /usr/include/boost/system/detail/error_category.hpp:13, + from /usr/include/boost/system/detail/error_code.hpp:14, + from /usr/include/boost/system/errc.hpp:14, + from /usr/include/boost/system/system_error.hpp:9, + from /usr/include/boost/thread/exceptions.hpp:22, + from /usr/include/boost/thread/pthread/thread_data.hpp:10, + from /usr/include/boost/thread/thread_only.hpp:17, + from /usr/include/boost/thread/thread.hpp:12, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp:24: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, + from /usr/include/boost/system/detail/config.hpp:11, + from /usr/include/boost/system/detail/error_category.hpp:13, + from /usr/include/boost/system/error_category.hpp:10, + from /usr/include/boost/filesystem/detail/path_traits.hpp:25, + from /usr/include/boost/filesystem/path.hpp:21, + from /usr/include/boost/filesystem.hpp:16, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:17: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp: In function 'int main(int, char**)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 40 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:18: +/usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ +[ 5%] Building CXX object CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o +[ 5%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o +[ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp +[ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o +[ 5%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 5%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 5%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/threadtopmerge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 5%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +[ 6%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 6%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o -MF CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -6628,18 +6803,78 @@ from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.cpp:16: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 3%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ptm_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp +[ 6%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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function 'int main(int, char**)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] - 40 | QRect deskRect = desk->availableGeometry(); +[ 7%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/toppic_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +[ 8%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp +[ 8%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_util.cpp +[ 9%] Building CXX object CMakeFiles/topfd.dir/src/topfd/envcnn/env_cnn.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topfd_gui.dir/src/topfd/dp/dp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp.cpp +[ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_a.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +[ 9%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex.cpp +[ 9%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp: In function 'int main(int, char**)': 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target toppic_gui -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -make -f CMakeFiles/toppic_gui.dir/build.make CMakeFiles/toppic_gui.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' -[ 4%] Building CXX object CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp -[ 4%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp -In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, - from /usr/include/boost/system/detail/config.hpp:11, - from /usr/include/boost/system/detail/error_category.hpp:13, - from /usr/include/boost/system/detail/error_code.hpp:14, - from /usr/include/boost/system/errc.hpp:14, - from /usr/include/boost/system/system_error.hpp:9, - from /usr/include/boost/thread/exceptions.hpp:22, - from /usr/include/boost/thread/pthread/thread_data.hpp:10, - from /usr/include/boost/thread/thread_only.hpp:17, - from /usr/include/boost/thread/thread.hpp:12, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp:24: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. 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CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp -[ 5%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.cpp -[ 5%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ion.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -[ 5%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, @@ -6850,209 +7017,12 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] - 36 | QRect deskRect = desk->availableGeometry(); - | ~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:18: -/usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here - 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; - | ^~~~~~~~~~~~~~~~~ -[ 5%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -make -f CMakeFiles/topmg_gui.dir/build.make CMakeFiles/topmg_gui.dir/depend -make[3]: Entering directory 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp: In function 'int main(int, char**)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] - 36 | QRect deskRect = desk->availableGeometry(); - | 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 9%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:11, + from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/common.hpp:31, + from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/fdeep.hpp:9, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 146 | array_back_insert_iterator(const array_back_insert_iterator& other) : + | ^ 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp +[ 10%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, + from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:15: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp +[ 10%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp +[ 10%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp +[ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, + from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ptm.cpp.o +[ 10%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp +[ 10%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp +[ 10%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, + from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_b.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_b.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_b.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_b.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.cpp +[ 10%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 10%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp -[ 11%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, - from /usr/include/boost/system/detail/config.hpp:11, - from /usr/include/boost/system/detail/error_category.hpp:13, - from /usr/include/boost/system/error_category.hpp:10, - from /usr/include/boost/filesystem/detail/path_traits.hpp:25, - from /usr/include/boost/filesystem/path.hpp:21, - from /usr/include/boost/filesystem.hpp:16, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:17: +[ 10%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +[ 10%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, + from /usr/include/boost/typeof/typeof.hpp:16, + from /usr/include/boost/numeric/ublas/traits.hpp:29, + from /usr/include/boost/numeric/ublas/storage.hpp:27, + from /usr/include/boost/numeric/ublas/vector.hpp:21, + from /usr/include/boost/numeric/ublas/matrix.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 11%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp -[ 11%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp -[ 11%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp -[ 11%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp -[ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -[ 11%] Building CXX object CMakeFiles/topindex.dir/src/common/base/prot_mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -[ 12%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 12%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o +[ 11%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o 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CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp +[ 11%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +[ 12%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +[ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +[ 12%] Building CXX object CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:11, + from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/common.hpp:31, + from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/fdeep.hpp:9, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] + 146 | array_back_insert_iterator(const array_back_insert_iterator& other) : + | ^ +/build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: note: remove the '< >' +[ 12%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +[ 12%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp +[ 12%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 13%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 13%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o +[ 13%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp +[ 16%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, + from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 16%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/common/base/residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/residue.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +[ 16%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, + from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 17%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 17%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:11, - from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/common.hpp:31, - from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/fdeep.hpp:9, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 146 | array_back_insert_iterator(const array_back_insert_iterator& other) : - | ^ -/build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: note: remove the '< >' -[ 16%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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CXX object CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7465,51 +7624,30 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 16%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, - from /usr/include/boost/typeof/typeof.hpp:16, - from /usr/include/boost/numeric/ublas/traits.hpp:29, - from /usr/include/boost/numeric/ublas/storage.hpp:27, - from /usr/include/boost/numeric/ublas/vector.hpp:21, - from /usr/include/boost/numeric/ublas/matrix.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 17%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7525,90 +7663,90 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 17%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7624,68 +7762,54 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 19%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection 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CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp -[ 23%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, - from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, - from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. 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23%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp +[ 23%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 23%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7768,28 +7904,120 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 26%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7805,10 +8033,76 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 26%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o +[ 26%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 26%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CXX object CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7824,344 +8118,297 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 23%] Building CXX object 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CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +[ 26%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp +[ 26%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': 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Building CXX object CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 28%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o +[ 28%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 28%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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26%] Building CXX object CMakeFiles/topindex.dir/src/common/xml/xml_dom_impl.cpp.o -[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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28%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 28%] Building CXX object CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp -[ 28%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 28%] Building CXX object CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp -[ 28%] Building CXX object CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 28%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -[ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o +[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 28%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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28%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o +[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 28%] Building CXX object CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -[ 28%] Building CXX object CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 29%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp -[ 29%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 29%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o +[ 31%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 31%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 31%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 31%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 31%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 31%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp +[ 31%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 31%] Building CXX object CMakeFiles/toppic.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 31%] Building CXX object CMakeFiles/toppic.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -8170,46 +8417,64 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 29%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o +[ 33%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 34%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -8218,42 +8483,69 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 35%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 36%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 32%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 36%] Building CXX object CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -8262,69 +8554,29 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -[ 32%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp -[ 32%] Building CXX object CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -[ 32%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 36%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp +[ 36%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -8340,368 +8592,116 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp -[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -[ 33%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -[ 33%] Building CXX object CMakeFiles/topmg.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 33%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 34%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 34%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 34%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp -[ 34%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 34%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -[ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 34%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 37%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 37%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 38%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 39%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp -[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 39%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 40%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp -[ 40%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 36%] Building CXX object CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o 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36%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 37%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -8710,1291 +8710,1113 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 41%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 39%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 42%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 42%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 43%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topindex_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_serialization -lboost_system -lboost_thread -lboost_iostreams -lpthread -lz -lhts -make[3]: Leaving directory 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 43%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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object CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o 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CMakeFiles/topfd.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topfd.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topfd.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +[ 41%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 46%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_autogen/include 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CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 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CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp +[ 47%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp -[ 49%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 49%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 50%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, - from /usr/include/boost/typeof/typeof.hpp:16, - from /usr/include/boost/numeric/ublas/traits.hpp:29, - from /usr/include/boost/numeric/ublas/storage.hpp:27, - from /usr/include/boost/numeric/ublas/vector.hpp:21, - from /usr/include/boost/numeric/ublas/matrix.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 50%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 50%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 50%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include 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CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 50%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 50%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -[ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 53%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 53%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o +[ 50%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 53%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 53%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 53%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o +[ 53%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp +[ 53%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 53%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 53%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 53%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o +[ 53%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp +[ 53%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +[ 53%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 54%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 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object CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 57%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 57%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -[ 57%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 57%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp -[ 57%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp [ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topindex_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_serialization -lboost_system -lboost_thread -lboost_iostreams -lpthread -lz -lhts +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o [ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 57%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/extend_peak.cpp.o -c 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, - from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, - from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 58%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 58%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o 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-fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, - from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, - from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:15: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 58%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 58%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 58%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 58%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp -[ 59%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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59%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 59%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp -[ 59%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ 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-isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include 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CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 59%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, - from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, - from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 60%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ 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CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/activation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 63%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 63%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/extend_peak.cpp.o +[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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object CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include 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CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -[ 63%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp -[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp -[ 64%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 61%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 64%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/spec_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 64%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ 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CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 62%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 62%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 62%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 62%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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object CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 62%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -10006,477 +9828,306 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 64%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp +[ 63%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 63%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +[ 65%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 66%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 69%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o +[ 66%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 69%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 71%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -[ 71%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 71%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 71%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 71%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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71%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o +[ 66%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 75%] Linking CXX executable /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topfd -/usr/bin/cmake -E cmake_link_script CMakeFiles/topfd.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o CMakeFiles/topfd.dir/src/common/base/neutral_loss.cpp.o CMakeFiles/topfd.dir/src/common/base/neutral_loss_base.cpp.o CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o CMakeFiles/topfd.dir/src/common/base/ptm.cpp.o CMakeFiles/topfd.dir/src/common/base/ptm_base.cpp.o CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o CMakeFiles/topfd.dir/src/common/base/residue.cpp.o CMakeFiles/topfd.dir/src/common/base/residue_base.cpp.o CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o CMakeFiles/topfd.dir/src/common/base/support_peak_type.cpp.o CMakeFiles/topfd.dir/src/common/base/support_peak_type_base.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc_util.cpp.o CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o CMakeFiles/topfd.dir/src/common/util/logger.cpp.o CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_err_handler.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_impl.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_parser.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_writer.cpp.o CMakeFiles/topfd.dir/src/para/peak_tolerance.cpp.o CMakeFiles/topfd.dir/src/para/prsm_para.cpp.o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o CMakeFiles/topfd.dir/src/ms/en[ 75%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ 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CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -[ 75%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 75%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 75%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 69%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -10488,12 +10139,30 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 69%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -10505,53 +10174,26 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 76%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o 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CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp -[ 79%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 79%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp -[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 69%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -10563,173 +10205,240 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 79%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui 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-o CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 80%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 80%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 80%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 81%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp -[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore 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CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -[ 82%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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+[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -10741,678 +10450,960 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 82%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 77%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 85%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o CMakeFiles/topfd.dir/src/common/base/neutral_loss.cpp.o CMakeFiles/topfd.dir/src/common/base/neutral_loss_base.cpp.o CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o CMakeFiles/topfd.dir/src/common/base/ptm.cpp.o CMakeFiles/topfd.dir/src/common/base/ptm_base.cpp.o CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o CMakeFiles/topfd.dir/src/common/base/residue.cpp.o CMakeFiles/topfd.dir/src/common/base/residue_base.cpp.o CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o CMakeFiles/topfd.dir/src/common/base/support_peak_type.cpp.o CMakeFiles/topfd.dir/src/common/base/support_peak_type_base.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc_util.cpp.o CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o CMakeFiles/topfd.dir/src/common/util/logger.cpp.o CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_err_handler.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_impl.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_parser.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_writer.cpp.o CMakeFiles/topfd.dir/src/para/peak_tolerance.cpp.o CMakeFiles/topfd.dir/src/para/prsm_para.cpp.o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o CMakeFiles/topfd.dir/src/ms/en[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp -[ 88%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -[ 89%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp -[ 89%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 85%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o 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CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp +[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ /src/prsm/prsm_coverage.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o 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CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/algorithm:61, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: +/usr/include/c++/14/bits/stl_algo.h:4492:5: note: declared here + 4492 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_algo.h:4492:5: note: declared here + 4492 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 85%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp +[ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 85%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_mass_table_util.cpp +[ 85%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topdiff.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topdiff.dir/src/prsm/expected_value.cpp.o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 89%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 89%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu 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CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp -[ 92%] Building CXX object CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp -[ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o +[ 89%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o +[ 89%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 89%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 89%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 89%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topdiff_gui_autogen/include 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CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topdiff -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lpthread -lz -lhts +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' +[ 89%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o +[ 89%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/toppic -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' [100%] Built target toppic make[2]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' dh_auto_test -O--buildsystem=cmake - rm -fr -- /tmp/dh-xdg-rundir-UbJkNZbn + rm -fr -- /tmp/dh-xdg-rundir-nfEwLckd create-stamp debian/debhelper-build-stamp dh_testroot 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/build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css/jquery.dataTables.min.css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/css/jquery.dataTables.css +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js/dataTables.dataTables.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/js/dataTables.dataTables.min.js +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/package.json +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/License.txt +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/Readme.md +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png +-- Installing: 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/build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/file-saver/dist/FileSaver.min.js.map -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/solid.min.css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/all.min.css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/svg-with-js.css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/svg-with-js.min.css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/fontawesome.min.css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/solid.css -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/brands.min.css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/regular.css --- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/node_modules/@fortawesome/fontawesome-free/css/regular.min.css --- Installing: 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/build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/multiscan.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/navBar.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/calculateprefixandsuffixmass.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/drawSvg.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/buttons.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Light-webfont.svg +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Bold-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Bold-webfont.svg +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Regular-webfont.woff +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Regular-webfont.svg +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Italic-webfont.woff +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Italic-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-BoldItalic-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Italic-webfont.svg +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-LightItalic-webfont.woff +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-LightItalic-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Regular-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-LightItalic-webfont.svg +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-BoldItalic-webfont.woff +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Bold-webfont.woff +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-BoldItalic-webfont.svg +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Light-webfont.eot +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/fonts/OpenSans-Light-webfont.woff +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/aminoaciddistribution.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/MultiScan.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/protein.js.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/visual/CalculatePrefixAndSuffixMass.html +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/spectrum.html.docx +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/prsm.docx +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/proteoform.docx +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/Functionality_Docs +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/Functionality_Docs/Spectrum_Graph +-- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/doc/Functionality_Docs/Spectrum_Graph/Graph.docx make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/bin @@ -12387,10 +12423,10 @@ install -p -m0644 debian/copyright debian/toppic/usr/share/doc/toppic/copyright install -p -m0644 debian/copyright debian/toppic-common/usr/share/doc/toppic-common/copyright dh_installchangelogs -O--buildsystem=cmake - install -m0755 -d debian/toppic/usr/share/doc/toppic - install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common install -p -m0644 debian/.debhelper/generated/toppic-common/dh_installchangelogs.dch.trimmed debian/toppic-common/usr/share/doc/toppic-common/changelog.Debian + install -m0755 -d debian/toppic/usr/share/doc/toppic + install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian dh_installman -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topfd.1 debian/toppic/usr/share/man/man1/topfd.1 @@ -12400,18 +12436,18 @@ install -p -m0644 ./debian/topmg.1 debian/toppic/usr/share/man/man1/topmg.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topdiff.1 debian/toppic/usr/share/man/man1/topdiff.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/toppic.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topfd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/toppic.1 mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topfd.1 mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1 - mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 - chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1 chmod 0644 -- debian/toppic/usr/share/man/man1/toppic.1 + mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 + chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake @@ -12452,33 +12488,33 @@ ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js dh_strip_nondeterminism -O--buildsystem=cmake Using 1667166702 as canonical time - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/png.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake - cd debian/toppic-common cd debian/toppic + cd debian/toppic-common chmod a-x usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 - gzip -9nf usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 chmod a-x usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md + gzip -9nf usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 gzip -9nf usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md cd '/build/reproducible-path/toppic-1.5.3+dfsg1' cd '/build/reproducible-path/toppic-1.5.3+dfsg1' @@ -12486,13 +12522,13 @@ find debian/toppic ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x + find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu @@ -12500,6 +12536,41 @@ objcopy --compress-debug-sections debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug chmod 0644 -- debian/toppic/usr/lib/debug/.dwz/x86_64-linux-gnu/toppic.debug dh_strip -a -O--buildsystem=cmake + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5d + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5d/b21dc5c932eabc9e01df8242eb10fbedcca666.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5d/b21dc5c932eabc9e01df8242eb10fbedcca666.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5d/b21dc5c932eabc9e01df8242eb10fbedcca666.debug debian/toppic/usr/bin/topdiff + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7/2ad8ba61fa05b781166fc0298f4cd80a0f1c2f.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7/2ad8ba61fa05b781166fc0298f4cd80a0f1c2f.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7/2ad8ba61fa05b781166fc0298f4cd80a0f1c2f.debug debian/toppic/usr/bin/topindex + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3/4f651753085ff5fc49511c26b835a2b04d931d.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3/4f651753085ff5fc49511c26b835a2b04d931d.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3/4f651753085ff5fc49511c26b835a2b04d931d.debug debian/toppic/usr/bin/topmerge + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2b + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2b/3015b69be48dc680fec87c1b0c960f95a565a7.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2b/3015b69be48dc680fec87c1b0c960f95a565a7.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2b/3015b69be48dc680fec87c1b0c960f95a565a7.debug debian/toppic/usr/bin/topmg + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e1 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e1/7c08cf5fc0210984c140cb87b780e82b131fb0.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e1/7c08cf5fc0210984c140cb87b780e82b131fb0.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e1/7c08cf5fc0210984c140cb87b780e82b131fb0.debug debian/toppic/usr/bin/topfd + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9d + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9d/3987e138805af8cd4fabdd70721bb1815311ff.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9d/3987e138805af8cd4fabdd70721bb1815311ff.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9d/3987e138805af8cd4fabdd70721bb1815311ff.debug debian/toppic/usr/bin/topfd_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9c + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9c/ec8d0236acd9e474e4d2642ac6721d40469f06.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9c/ec8d0236acd9e474e4d2642ac6721d40469f06.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9c/ec8d0236acd9e474e4d2642ac6721d40469f06.debug debian/toppic/usr/bin/toppic install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/12 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/12/39cb7084816fa877a6307bfbffd7f671591d5b.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/12/39cb7084816fa877a6307bfbffd7f671591d5b.debug @@ -12510,56 +12581,21 @@ chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/de/8dfcaa822783addb69ad8bb729c0dc2307b6cf.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/de/8dfcaa822783addb69ad8bb729c0dc2307b6cf.debug debian/toppic/usr/bin/topmerge_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9c - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9c/ec8d0236acd9e474e4d2642ac6721d40469f06.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9c/ec8d0236acd9e474e4d2642ac6721d40469f06.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9c/ec8d0236acd9e474e4d2642ac6721d40469f06.debug debian/toppic/usr/bin/toppic - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7/2ad8ba61fa05b781166fc0298f4cd80a0f1c2f.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7/2ad8ba61fa05b781166fc0298f4cd80a0f1c2f.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7/2ad8ba61fa05b781166fc0298f4cd80a0f1c2f.debug debian/toppic/usr/bin/topindex - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/db - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topconvert debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/db/0a28f3ff49b69945b77ae83e3e2ec3316abede.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/db/0a28f3ff49b69945b77ae83e3e2ec3316abede.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topconvert - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/db/0a28f3ff49b69945b77ae83e3e2ec3316abede.debug debian/toppic/usr/bin/topconvert install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b8 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b8/f55c50d58a77d636b8f19f6add8f7ff606ab07.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b8/f55c50d58a77d636b8f19f6add8f7ff606ab07.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b8/f55c50d58a77d636b8f19f6add8f7ff606ab07.debug debian/toppic/usr/bin/topdiff_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/db + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topconvert debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/db/0a28f3ff49b69945b77ae83e3e2ec3316abede.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/db/0a28f3ff49b69945b77ae83e3e2ec3316abede.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topconvert + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/db/0a28f3ff49b69945b77ae83e3e2ec3316abede.debug debian/toppic/usr/bin/topconvert install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1e/4d9f27ef86c88d4e426a94405f5535d78a7f28.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1e/4d9f27ef86c88d4e426a94405f5535d78a7f28.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1e/4d9f27ef86c88d4e426a94405f5535d78a7f28.debug debian/toppic/usr/bin/toppic_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9d - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9d/3987e138805af8cd4fabdd70721bb1815311ff.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9d/3987e138805af8cd4fabdd70721bb1815311ff.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9d/3987e138805af8cd4fabdd70721bb1815311ff.debug debian/toppic/usr/bin/topfd_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2b - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2b/3015b69be48dc680fec87c1b0c960f95a565a7.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2b/3015b69be48dc680fec87c1b0c960f95a565a7.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/2b/3015b69be48dc680fec87c1b0c960f95a565a7.debug debian/toppic/usr/bin/topmg - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3/4f651753085ff5fc49511c26b835a2b04d931d.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3/4f651753085ff5fc49511c26b835a2b04d931d.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3/4f651753085ff5fc49511c26b835a2b04d931d.debug debian/toppic/usr/bin/topmerge - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e1 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e1/7c08cf5fc0210984c140cb87b780e82b131fb0.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e1/7c08cf5fc0210984c140cb87b780e82b131fb0.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e1/7c08cf5fc0210984c140cb87b780e82b131fb0.debug debian/toppic/usr/bin/topfd - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5d - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5d/b21dc5c932eabc9e01df8242eb10fbedcca666.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5d/b21dc5c932eabc9e01df8242eb10fbedcca666.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5d/b21dc5c932eabc9e01df8242eb10fbedcca666.debug debian/toppic/usr/bin/topdiff install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7/24242b656a0932850e0e9fb4189905f687f8cd.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/f7/24242b656a0932850e0e9fb4189905f687f8cd.debug @@ -12576,7 +12612,7 @@ rm -f debian/toppic/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN - dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topmg_gui + dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topmg_gui dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect @@ -12585,23 +12621,23 @@ install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN dh_gencontrol -O--buildsystem=cmake - install -m0755 -d debian/toppic-common/DEBIAN - echo misc:Depends= >> debian/toppic-common.substvars - echo misc:Pre-Depends= >> debian/toppic-common.substvars - dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common install -m0755 -d debian/toppic/DEBIAN echo misc:Depends= >> debian/toppic.substvars echo misc:Pre-Depends= >> debian/toppic.substvars install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/.debhelper/toppic/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=toppic-dbgsym "-DDepends=toppic (= \${binary:Version})" "-DDescription=debug symbols for toppic" "-DBuild-Ids=1239cb7084816fa877a6307bfbffd7f671591d5b 1e4d9f27ef86c88d4e426a94405f5535d78a7f28 2b3015b69be48dc680fec87c1b0c960f95a565a7 5db21dc5c932eabc9e01df8242eb10fbedcca666 9cec8d0236acd9e474e4d2642ac6721d40469f06 9d3987e138805af8cd4fabdd70721bb1815311ff a34f651753085ff5fc49511c26b835a2b04d931d b8f55c50d58a77d636b8f19f6add8f7ff606ab07 db0a28f3ff49b69945b77ae83e3e2ec3316abede de8dfcaa822783addb69ad8bb729c0dc2307b6cf e17c08cf5fc0210984c140cb87b780e82b131fb0 f724242b656a0932850e0e9fb4189905f687f8cd f72ad8ba61fa05b781166fc0298f4cd80a0f1c2f" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - chmod 0644 -- debian/toppic-common/DEBIAN/control + install -m0755 -d debian/toppic-common/DEBIAN + echo misc:Depends= >> debian/toppic-common.substvars + echo misc:Pre-Depends= >> debian/toppic-common.substvars + dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/toppic + chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/toppic/DEBIAN/control dh_md5sums -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN - cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/toppic-common/DEBIAN + cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/toppic/DEBIAN/md5sums install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN @@ -12612,9 +12648,9 @@ dpkg-deb --root-owner-group --build debian/toppic .. dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. dpkg-deb --root-owner-group --build debian/toppic-common .. -dpkg-deb: building package 'toppic-common' in '../toppic-common_1.5.3+dfsg1-1_all.deb'. dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_amd64.deb'. dpkg-deb: building package 'toppic' in '../toppic_1.5.3+dfsg1-1_amd64.deb'. +dpkg-deb: building package 'toppic-common' in '../toppic-common_1.5.3+dfsg1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../toppic_1.5.3+dfsg1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../toppic_1.5.3+dfsg1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -12622,12 +12658,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/544631/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/544631/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/490930 and its subdirectories -I: Current time: Sun Mar 9 08:57:05 -12 2025 -I: pbuilder-time-stamp: 1741553825 +I: removing directory /srv/workspace/pbuilder/544631 and its subdirectories +I: Current time: Sun Apr 12 17:27:29 +14 2026 +I: pbuilder-time-stamp: 1775964449