Diff of the two buildlogs: -- --- b1/build.log 2025-07-17 21:08:21.527805391 +0000 +++ b2/build.log 2025-07-17 21:11:26.372035091 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 17 09:06:46 -12 2025 -I: pbuilder-time-stamp: 1752786406 +I: Current time: Thu Aug 20 17:31:28 +14 2026 +I: pbuilder-time-stamp: 1787196688 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying include-dssp.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/732713/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/772726/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 20 03:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/772726/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/772726/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2988894b12184a82ae3876082a370372' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='732713' - PS1='# ' - PS2='> ' + INVOCATION_ID=eabfcf7d7478475d8a7b5170a481481a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=772726 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ouKhG3Nm/pbuilderrc_8IWF --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ouKhG3Nm/b1 --logfile b1/build.log tortoize_2.0.15-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ouKhG3Nm/pbuilderrc_8NiL --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ouKhG3Nm/b2 --logfile b2/build.log tortoize_2.0.15-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.32+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.32-1~bpo12+1 (2025-06-21) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/732713/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/772726/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -195,7 +227,7 @@ Get: 72 http://deb.debian.org/debian trixie/main amd64 libmcfp-dev amd64 1.3.5-2 [19.7 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 mrc amd64 1.3.15-2 [56.2 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 nlohmann-json3-dev all 3.11.3-2.1 [262 kB] -Fetched 66.9 MB in 1s (54.2 MB/s) +Fetched 66.9 MB in 4s (15.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19850 files and directories currently installed.) @@ -506,7 +538,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/tortoize-2.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tortoize_2.0.15-1_source.changes +I: user script /srv/workspace/pbuilder/772726/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/772726/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/tortoize-2.0.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../tortoize_2.0.15-1_source.changes dpkg-buildpackage: info: source package tortoize dpkg-buildpackage: info: source version 2.0.15-1 dpkg-buildpackage: info: source distribution unstable @@ -536,8 +572,8 @@ -- Found Threads: TRUE -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") fof cifpp data dir: /usr/share/libcifpp --- Configuring done (0.4s) --- Generating done (0.1s) +-- Configuring done (0.5s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -549,7 +585,7 @@ -- Build files have been written to: /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.15' dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/tortoize-2.0.15 -B/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -567,8 +603,8 @@ make -f test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/build.make test/CMakeFiles/generate_tortoize-unit-test_depends_file.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' -[ 7%] Generating depends file for tortoize resources [ 14%] Generating depends file for tortoize-unit-test resources +[ 14%] Generating depends file for tortoize resources /usr/bin/mrc -d /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/mrc-tortoize.dir/rsrc.d -o /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/mrc-tortoize.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/mrc -d /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test/mrc-tortoize-unit-test.dir/rsrc.d -o /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test/mrc-tortoize-unit-test.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' @@ -579,37 +615,37 @@ make -f test/CMakeFiles/tortoize-unit-test.dir/build.make test/CMakeFiles/tortoize-unit-test.dir/depend make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' -[ 21%] Generating mrc-tortoize-unit-test.dir/rsrc.obj -[ 28%] Generating mrc-tortoize.dir/rsrc.obj -cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test/mrc-tortoize-unit-test.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic +[ 21%] Generating mrc-tortoize.dir/rsrc.obj +[ 28%] Generating mrc-tortoize-unit-test.dir/rsrc.obj /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/mrc-tortoize.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic +cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test/mrc-tortoize-unit-test.dir/rsrc.obj /build/reproducible-path/tortoize-2.0.15/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.15/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/CMakeFiles/tortoize.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.15 /build/reproducible-path/tortoize-2.0.15/test /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test/CMakeFiles/tortoize-unit-test.dir/DependInfo.cmake "--color=" Dependencies file "mrc-tortoize.dir/rsrc.d" is newer than depends file "/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/CMakeFiles/tortoize.dir/compiler_depend.internal". Dependencies file "test/mrc-tortoize-unit-test.dir/rsrc.d" is newer than depends file "/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test/CMakeFiles/tortoize-unit-test.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target tortoize Consolidate compiler generated dependencies of target tortoize-unit-test +Consolidate compiler generated dependencies of target tortoize make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' -make -f CMakeFiles/tortoize.dir/build.make CMakeFiles/tortoize.dir/build make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' +make -f CMakeFiles/tortoize.dir/build.make CMakeFiles/tortoize.dir/build make -f test/CMakeFiles/tortoize-unit-test.dir/build.make test/CMakeFiles/tortoize-unit-test.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' -[ 35%] Building CXX object CMakeFiles/tortoize.dir/src/dssp.cpp.o -[ 42%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -[ 50%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -[ 71%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize.cpp.o -[ 71%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o -[ 71%] Building CXX object CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -[ 78%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o -/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp.cpp -cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp.cpp +[ 64%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o +[ 64%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o +[ 64%] Building CXX object CMakeFiles/tortoize.dir/src/dssp.cpp.o +[ 64%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o +[ 64%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o [ 85%] Building CXX object test/CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o -/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize-main.cpp -/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp-io.cpp +[ 85%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize.cpp.o +[ 85%] Building CXX object CMakeFiles/tortoize.dir/src/dssp-io.cpp.o +/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp.cpp cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o -c /build/reproducible-path/tortoize-2.0.15/test/tortoize-unit-test.cpp -cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp-io.cpp +/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize-main.cpp +cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp.cpp /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize.cpp +cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp-io.cpp +/usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/dssp-io.cpp cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.15/src -I/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o -c /build/reproducible-path/tortoize-2.0.15/src/tortoize.cpp [ 92%] Linking CXX executable tortoize-unit-test cd /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/tortoize-unit-test.dir/link.txt --verbose=1 @@ -617,18 +653,18 @@ /usr/bin/cmake -E cmake_link_script CMakeFiles/tortoize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tortoize-unit-test.dir/link.d "CMakeFiles/tortoize-unit-test.dir/tortoize-unit-test.cpp.o" "CMakeFiles/tortoize-unit-test.dir/__/src/dssp.cpp.o" "CMakeFiles/tortoize-unit-test.dir/__/src/dssp-io.cpp.o" "CMakeFiles/tortoize-unit-test.dir/__/src/tortoize.cpp.o" "mrc-tortoize-unit-test.dir/rsrc.obj" -o tortoize-unit-test /usr/lib/x86_64-linux-gnu/libcifpp.so.7.0.9 /usr/lib/libCatch2.a /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' +[100%] Built target tortoize-unit-test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.15=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tortoize.dir/link.d CMakeFiles/tortoize.dir/src/dssp.cpp.o "CMakeFiles/tortoize.dir/src/dssp-io.cpp.o" CMakeFiles/tortoize.dir/src/tortoize.cpp.o "CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o" "mrc-tortoize.dir/rsrc.obj" -o tortoize /usr/lib/x86_64-linux-gnu/libcifpp.so.7.0.9 /usr/lib/x86_64-linux-gnu/libz.so make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' -[100%] Built target tortoize-unit-test [100%] Built target tortoize make[2]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' dh_auto_test - cd obj-x86_64-linux-gnu && make -j40 test ARGS\+=--verbose ARGS\+=-j40 + cd obj-x86_64-linux-gnu && make -j42 test ARGS\+=--verbose ARGS\+=-j42 make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 +/usr/bin/ctest --force-new-ctest-process --verbose -j42 UpdateCTestConfiguration from :/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu/DartConfiguration.tcl @@ -678,7 +714,7 @@ 1: The current order of compound factory objects is: 1: 1: CCD components.cif resource -1: Randomness seeded to: 1705617264 +1: Randomness seeded to: 2400105507 1: Unknown compound: ALA 1: Unknown compound: ARG 1: Unknown compound: ASN @@ -724,16 +760,16 @@ 1: =============================================================================== 1: All tests passed (4 assertions in 1 test case) 1: -1/1 Test #1: tortoize-unit-test ............... Passed 0.20 sec +1/1 Test #1: tortoize-unit-test ............... Passed 0.21 sec 100% tests passed, 0 tests failed out of 1 -Total Test time (real) = 0.20 sec +Total Test time (real) = 0.21 sec make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/tortoize/ - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/tortoize-2.0.15/debian/tortoize AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/tortoize-2.0.15/debian/tortoize AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/tortoize-2.0.15 -B/build/reproducible-path/tortoize-2.0.15/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -772,12 +808,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/772726/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/772726/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/732713 and its subdirectories -I: Current time: Thu Jul 17 09:08:21 -12 2025 -I: pbuilder-time-stamp: 1752786501 +I: removing directory /srv/workspace/pbuilder/772726 and its subdirectories +I: Current time: Thu Aug 20 17:34:25 +14 2026 +I: pbuilder-time-stamp: 1787196865