Diff of the two buildlogs: -- --- b1/build.log 2025-01-23 00:06:43.874280468 +0000 +++ b2/build.log 2025-01-23 00:08:21.605869466 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jan 22 12:05:04 -12 2025 -I: pbuilder-time-stamp: 1737590704 +I: Current time: Wed Feb 25 20:29:47 +14 2026 +I: pbuilder-time-stamp: 1772000987 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying fix_build_debian.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/700290/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3919910/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 25 06:29 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3919910/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3919910/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8dcb4925edbf49408b8c7bf00ea6e75e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='700290' - PS1='# ' - PS2='> ' + INVOCATION_ID=eed6036fa70a489b9d21ba17e4bb9dce + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3919910 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eSGkyOUN/pbuilderrc_JFwu --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eSGkyOUN/b1 --logfile b1/build.log gatk-native-bindings_1.0.0+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eSGkyOUN/pbuilderrc_SyOI --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eSGkyOUN/b2 --logfile b2/build.log gatk-native-bindings_1.0.0+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/700290/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3919910/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -376,7 +408,7 @@ Get: 259 http://deb.debian.org/debian trixie/main arm64 gradle-debian-helper all 2.4 [24.5 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 jarwrapper all 0.80 [9692 B] Get: 261 http://deb.debian.org/debian trixie/main arm64 javahelper all 0.80 [80.4 kB] -Fetched 260 MB in 1s (184 MB/s) +Fetched 260 MB in 1s (238 MB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) @@ -1236,8 +1268,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Jan 23 00:05:58 UTC 2025. -Universal Time is now: Thu Jan 23 00:05:58 UTC 2025. +Local time is now: Wed Feb 25 06:30:33 UTC 2026. +Universal Time is now: Wed Feb 25 06:30:33 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1653,7 +1685,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-native-bindings_1.0.0+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/3919910/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3919910/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-native-bindings_1.0.0+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-native-bindings dpkg-buildpackage: info: source version 1.0.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1669,7 +1705,7 @@ dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" Duplicate specification "u=s" for option "u" rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper @@ -1698,7 +1734,7 @@ dh_autoreconf -O--buildsystem=gradle dh_auto_configure -O--buildsystem=gradle jh_linkjars -O--buildsystem=gradle -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" Duplicate specification "u=s" for option "u" debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg' @@ -1713,18 +1749,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.776 secs. -The client will now receive all logging from the daemon (pid: 718177). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/daemon/4.4.1/daemon-718177.out.log +An attempt to start the daemon took 1.331 secs. +The client will now receive all logging from the daemon (pid: 3948985). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/daemon/4.4.1/daemon-3948985.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@212ceb08 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@212ceb08 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1bf8afcd +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@51e1a6b2 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@51e1a6b2 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@291008ad Starting Build Compiling initialization script '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@77b72ed5 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@2bb552a0 Compiling initialization script '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1744,45 +1780,45 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@19161c1a +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@144e3078 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1bf8afcd -Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@4c8d3ee7 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@45271029 -:compileJava (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@291008ad +Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3506ee07 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b560d08 +:compileJava (Thread[#55,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.008 secs. -Up-to-date check for task ':compileJava' took 0.049 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.004 secs. +Up-to-date check for task ':compileJava' took 0.046 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 1.377 secs. -:processResources (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 1.008 secs. +:processResources (Thread[#55,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.025 secs. -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:processResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.005 secs. +:classes (Thread[#55,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:classes (Thread[#55,Task worker for ':',5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#55,Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.004 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.005 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/build/debian/gatk-native-bindings.pom -:debianMavenPom (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.105 secs. -:jar (Thread[#56,Task worker for ':' Thread 2,5,main]) started. +:debianMavenPom (Thread[#55,Task worker for ':',5,main]) completed. Took 0.086 secs. +:jar (Thread[#55,Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.012 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.013 secs. It is not up-to-date because: No history is available. -:jar (Thread[#56,Task worker for ':' Thread 2,5,main]) completed. Took 0.058 secs. +:jar (Thread[#55,Task worker for ':',5,main]) completed. Took 0.058 secs. -BUILD SUCCESSFUL in 11s +BUILD SUCCESSFUL in 8s 3 actionable tasks: 3 executed make[1]: Leaving directory '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg' jh_build -O--buildsystem=gradle @@ -1803,17 +1839,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.328 secs. -The client will now receive all logging from the daemon (pid: 720367). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/daemon/4.4.1/daemon-720367.out.log +An attempt to start the daemon took 1.313 secs. +The client will now receive all logging from the daemon (pid: 3951704). The daemon log file: /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/daemon/4.4.1/daemon-3951704.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@35b16ead -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@35b16ead -Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@11b23a5c +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@59acf321 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@59acf321 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1aaf2cf6 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@76f091bd +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5a14d56a Settings evaluated using settings file '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/build.gradle'. Included projects: [root project 'gatk-native-bindings'] @@ -1828,56 +1864,56 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f5f867b +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@345e5bd2 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@11b23a5c -Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@17cf41bd -Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@2bc38777 -:compileJava (Thread[#56,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1aaf2cf6 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@3db5e016 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@2615a7e0 +:compileJava (Thread[#55,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.004 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.033 secs). +Putting task artifact state for task ':compileJava' into context took 0.007 secs. +Skipping task ':compileJava' as it is up-to-date (took 0.073 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#56,Task worker for ':',5,main]) completed. Took 0.073 secs. -:processResources (Thread[#56,Task worker for ':',5,main]) started. +:compileJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.224 secs. +:processResources (Thread[#55,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#56,Task worker for ':',5,main]) completed. Took 0.003 secs. -:classes (Thread[#56,Task worker for ':',5,main]) started. +:processResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.019 secs. +:classes (Thread[#55,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#56,Task worker for ':',5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#56,Task worker for ':',5,main]) started. +:classes (Thread[#55,Task worker for ':',5,main]) completed. Took 0.006 secs. +:compileTestJava (Thread[#55,Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/src/test/java', not found Skipping task ':compileTestJava' as it has no source files and no previous output files. :compileTestJava NO-SOURCE -:compileTestJava (Thread[#56,Task worker for ':',5,main]) completed. Took 0.002 secs. -:processTestResources (Thread[#56,Task worker for ':',5,main]) started. +:compileTestJava (Thread[#55,Task worker for ':',5,main]) completed. Took 0.005 secs. +:processTestResources (Thread[#55,Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#56,Task worker for ':',5,main]) completed. Took 0.002 secs. -:testClasses (Thread[#56,Task worker for ':',5,main]) started. +:processTestResources (Thread[#55,Task worker for ':',5,main]) completed. Took 0.002 secs. +:testClasses (Thread[#55,Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses UP-TO-DATE -:testClasses (Thread[#56,Task worker for ':',5,main]) completed. Took 0.005 secs. -:test (Thread[#56,Task worker for ':',5,main]) started. +:testClasses (Thread[#55,Task worker for ':',5,main]) completed. Took 0.0 secs. +:test (Thread[#55,Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Skipping task ':test' as it has no source files and no previous output files. :test NO-SOURCE -:test (Thread[#56,Task worker for ':',5,main]) completed. Took 0.004 secs. +:test (Thread[#55,Task worker for ':',5,main]) completed. Took 0.003 secs. -BUILD SUCCESSFUL in 5s +BUILD SUCCESSFUL in 7s 1 actionable task: 1 up-to-date make[1]: Leaving directory '/build/reproducible-path/gatk-native-bindings-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp @@ -1906,14 +1942,14 @@ ln -s gatk-native-bindings-1.0.0.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar jh_classpath -O--buildsystem=gradle jh_manifest -plibgatk-native-bindings-java --classpath=/usr/lib/jvm/default-java/lib/tools.jar debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar -Duplicate specification "V:s" for option "V" -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" +Duplicate specification "version|V" for option "V" Updating symlinked /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar (via debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings.jar) Reading manifest from /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar Updating manifest in /build/reproducible-path/gatk-native-bindings-1.0.0+dfsg/debian/libgatk-native-bindings-java/usr/share/java/gatk-native-bindings-1.0.0.jar jh_manifest -O--buildsystem=gradle -Duplicate specification "V:s" for option "V" Duplicate specification "version|V" for option "V" +Duplicate specification "V:s" for option "V" find debian/libgatk-native-bindings-java -name '*.jar' Found usr/share/java/gatk-native-bindings-1.0.0.jar Found symlink usr/share/java/gatk-native-bindings.jar @@ -2000,12 +2036,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3919910/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3919910/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/700290 and its subdirectories -I: Current time: Wed Jan 22 12:06:42 -12 2025 -I: pbuilder-time-stamp: 1737590802 +I: removing directory /srv/workspace/pbuilder/3919910 and its subdirectories +I: Current time: Wed Feb 25 20:31:20 +14 2026 +I: pbuilder-time-stamp: 1772001080