Diff of the two buildlogs: -- --- b1/build.log 2025-02-06 10:51:28.115400369 +0000 +++ b2/build.log 2025-02-06 10:54:02.900386146 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Mar 11 05:09:15 -12 2026 -I: pbuilder-time-stamp: 1773248955 +I: Current time: Fri Feb 7 00:51:33 +14 2025 +I: pbuilder-time-stamp: 1738839093 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying omit_blat_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4009689/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1309889/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 6 10:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1309889/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1309889/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='730f5d994c5d42b2a41d79b3fa5e481d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4009689' - PS1='# ' - PS2='> ' + INVOCATION_ID=ec2cd498d7034a09a7ab69986932f388 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1309889 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CrGsm0eE/pbuilderrc_QgIK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CrGsm0eE/b1 --logfile b1/build.log igv_2.18.5+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CrGsm0eE/pbuilderrc_WVBq --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CrGsm0eE/b2 --logfile b2/build.log igv_2.18.5+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4009689/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1309889/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -649,7 +681,7 @@ Get: 474 http://deb.debian.org/debian trixie/main arm64 libprotobuf-java all 3.21.12-10 [1268 kB] Get: 475 http://deb.debian.org/debian trixie/main arm64 libswing-layout-java all 1.0.4-4.1 [44.4 kB] Get: 476 http://deb.debian.org/debian trixie/main arm64 openjfx arm64 11.0.11+1-4 [6652 B] -Fetched 443 MB in 3s (129 MB/s) +Fetched 443 MB in 2s (260 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19957 files and directories currently installed.) @@ -2208,8 +2240,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Mar 11 17:11:45 UTC 2026. -Universal Time is now: Wed Mar 11 17:11:45 UTC 2026. +Local time is now: Thu Feb 6 10:52:39 UTC 2025. +Universal Time is now: Thu Feb 6 10:52:39 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -2815,7 +2847,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/igv-2.18.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../igv_2.18.5+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1309889/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1309889/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/igv-2.18.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../igv_2.18.5+dfsg-1_source.changes dpkg-buildpackage: info: source package igv dpkg-buildpackage: info: source version 2.18.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2830,7 +2866,7 @@ rm -Rf /build/reproducible-path/igv-2.18.5\+dfsg/.gradle /build/reproducible-path/igv-2.18.5\+dfsg/buildSrc/.gradle .m2 dh_autoreconf_clean -O--buildsystem=gradle jh_clean -O--buildsystem=gradle -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" Duplicate specification "unlink|u" for option "u" debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/igv-2.18.5+dfsg' @@ -2858,78 +2894,78 @@ mkdir ../../src/main/resources-icons && \ mv *.png ../../src/main/resources-icons/ -** (process:4032561): WARNING **: 05:12:25.901: Unable to create profile directory (Permission denied) (13) -** Message: 05:12:25.931: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 05:12:25.932: Inkscape will run with default settings, and new settings will not be saved. +** (process:1324814): WARNING **: 00:53:08.257: Unable to create profile directory (Permission denied) (13) +** Message: 00:53:08.269: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 00:53:08.269: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:4032561): WARNING **: 05:12:26.215: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:1324814): WARNING **: 00:53:08.456: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:4032561): WARNING **: 05:12:26.223: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:1324814): WARNING **: 00:53:08.456: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:4032561): Gtk-CRITICAL **: 05:12:26.296: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:1324814): Gtk-CRITICAL **: 00:53:08.494: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:4032561): WARNING **: 05:12:26.296: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:1324814): WARNING **: 00:53:08.494: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:4032690): WARNING **: 05:12:26.531: Unable to create profile directory (Permission denied) (13) -** Message: 05:12:26.547: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 05:12:26.548: Inkscape will run with default settings, and new settings will not be saved. +** (process:1324822): WARNING **: 00:53:08.627: Unable to create profile directory (Permission denied) (13) +** Message: 00:53:08.635: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 00:53:08.635: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:4032690): WARNING **: 05:12:26.837: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:1324822): WARNING **: 00:53:08.789: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:4032690): WARNING **: 05:12:26.843: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:1324822): WARNING **: 00:53:08.789: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:4032690): Gtk-CRITICAL **: 05:12:26.908: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:1324822): Gtk-CRITICAL **: 00:53:08.820: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:4032690): WARNING **: 05:12:26.908: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:1324822): WARNING **: 00:53:08.820: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:4032760): WARNING **: 05:12:27.116: Unable to create profile directory (Permission denied) (13) -** Message: 05:12:27.132: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 05:12:27.132: Inkscape will run with default settings, and new settings will not be saved. +** (process:1324829): WARNING **: 00:53:08.920: Unable to create profile directory (Permission denied) (13) +** Message: 00:53:08.928: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 00:53:08.928: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:4032760): WARNING **: 05:12:27.286: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:1324829): WARNING **: 00:53:09.069: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:4032760): WARNING **: 05:12:27.286: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:1324829): WARNING **: 00:53:09.069: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:4032760): Gtk-CRITICAL **: 05:12:27.319: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:1324829): Gtk-CRITICAL **: 00:53:09.099: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:4032760): WARNING **: 05:12:27.319: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:1324829): WARNING **: 00:53:09.099: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:4032799): WARNING **: 05:12:27.420: Unable to create profile directory (Permission denied) (13) -** Message: 05:12:27.428: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 05:12:27.428: Inkscape will run with default settings, and new settings will not be saved. +** (process:1324836): WARNING **: 00:53:09.200: Unable to create profile directory (Permission denied) (13) +** Message: 00:53:09.208: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 00:53:09.208: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:4032799): WARNING **: 05:12:27.699: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:1324836): WARNING **: 00:53:09.347: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:4032799): WARNING **: 05:12:27.707: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:1324836): WARNING **: 00:53:09.347: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:4032799): Gtk-CRITICAL **: 05:12:27.762: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:1324836): Gtk-CRITICAL **: 00:53:09.378: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:4032799): WARNING **: 05:12:27.767: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:1324836): WARNING **: 00:53:09.378: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:4032859): WARNING **: 05:12:27.974: Unable to create profile directory (Permission denied) (13) -** Message: 05:12:27.990: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 05:12:27.990: Inkscape will run with default settings, and new settings will not be saved. +** (process:1324843): WARNING **: 00:53:09.478: Unable to create profile directory (Permission denied) (13) +** Message: 00:53:09.486: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 00:53:09.486: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:4032859): WARNING **: 05:12:28.279: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:1324843): WARNING **: 00:53:09.625: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:4032859): WARNING **: 05:12:28.279: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:1324843): WARNING **: 00:53:09.625: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:4032859): Gtk-CRITICAL **: 05:12:28.343: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:1324843): Gtk-CRITICAL **: 00:53:09.655: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:4032859): WARNING **: 05:12:28.347: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:1324843): WARNING **: 00:53:09.655: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. make[1]: Leaving directory '/build/reproducible-path/igv-2.18.5+dfsg' jh_linkjars -O--buildsystem=gradle -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" Duplicate specification "unlink|u" for option "u" dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d @@ -2942,18 +2978,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.445 secs. -The client will now receive all logging from the daemon (pid: 4033233). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-4033233.out.log +An attempt to start the daemon took 0.954 secs. +The client will now receive all logging from the daemon (pid: 1324957). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-1324957.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@47c7ae71 -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@47c7ae71 -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5efc6580 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@20055627 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@20055627 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5cd30856 Starting Build Compiling initialization script '/build/reproducible-path/igv-2.18.5+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@11696bf5 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@4c815c15 Compiling initialization script '/build/reproducible-path/igv-2.18.5+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2970,15 +3006,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@7f8655 +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@3b8be57d Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5efc6580 -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@144be202 -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@3dbc4bfb +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5cd30856 +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@4fa7a585 +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6a738eca :compileJava (Thread[#50,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.004 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@5dd382b4 +Putting task artifact state for task ':compileJava' into context took 0.005 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@202d3c90 Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3079,7 +3115,7 @@ at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':compileJava' took 5.891 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 2.584 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found @@ -3089,32 +3125,32 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 28.115 secs. +:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 12.57 secs. :processResources (Thread[#50,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.135 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.082 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.419 secs. +:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.249 secs. :classes (Thread[#50,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. +:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.001 secs. :debianMavenPom (Thread[#50,Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/igv-2.18.5+dfsg/build/debian/igv.pom -:debianMavenPom (Thread[#50,Task worker for ':',5,main]) completed. Took 0.16 secs. +:debianMavenPom (Thread[#50,Task worker for ':',5,main]) completed. Took 0.127 secs. :jar (Thread[#50,Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.07 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.059 secs. It is not up-to-date because: No history is available. -:jar (Thread[#50,Task worker for ':',5,main]) completed. Took 0.68 secs. +:jar (Thread[#50,Task worker for ':',5,main]) completed. Took 0.633 secs. -BUILD SUCCESSFUL in 42s +BUILD SUCCESSFUL in 19s 4 actionable tasks: 4 executed jh_build -O--buildsystem=gradle dh_auto_test -O--buildsystem=gradle @@ -3128,17 +3164,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.332 secs. -The client will now receive all logging from the daemon (pid: 4038836). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-4038836.out.log +An attempt to start the daemon took 0.974 secs. +The client will now receive all logging from the daemon (pid: 1326780). The daemon log file: /build/reproducible-path/igv-2.18.5+dfsg/.gradle/daemon/4.4.1/daemon-1326780.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@70e9abce -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@70e9abce -Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@45ceb1f0 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@72fc2558 +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@72fc2558 +Creating new cache for fileHashes, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@711549e9 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@312dd263 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@478d8ef6 Settings evaluated using settings file '/build/reproducible-path/igv-2.18.5+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/igv-2.18.5+dfsg/build.gradle'. Included projects: [root project 'igv'] @@ -3150,15 +3186,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@34d247ed +Creating new cache for annotation-processors, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@11ab8237 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@45ceb1f0 -Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@b152120 -Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7d50aa39 -:compileJava (Thread[#50,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@711549e9 +Creating new cache for taskHistory, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6aa8b2f +Creating new cache for outputFiles, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@65bf0517 +:compileJava (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.009 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1ef2205b +Putting task artifact state for task ':compileJava' into context took 0.004 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/igv-2.18.5+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@656a5e06 Loading the Maven rules... Replacing com.google.code.gson:gson:jar:2.8.9 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian @@ -3211,21 +3247,21 @@ Passing through xml-apis:xml-apis-1.4:jar:debian file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Skipping task ':compileJava' as it is up-to-date (took 2.406 secs). +Skipping task ':compileJava' as it is up-to-date (took 1.133 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 2.473 secs. -:processResources (Thread[#50,Task worker for ':',5,main]) started. +:compileJava (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 1.164 secs. +:processResources (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.117 secs). +Skipping task ':processResources' as it is up-to-date (took 0.106 secs). :processResources UP-TO-DATE -:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.126 secs. -:classes (Thread[#50,Task worker for ':',5,main]) started. +:processResources (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.112 secs. +:classes (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#50,Task worker for ':',5,main]) started. +:classes (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Malformed class file [OAuthProvider$AuthStateEvent.class] found on compile classpath, which means that this class will cause a compile error if referenced in a source file. Gradle 5.0 will no longer allow malformed classes on compile classpath. @@ -3625,7 +3661,7 @@ Ignoring org.glassfish.jersey.core:jersey-common:jar:2.34 file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':compileTestJava' took 1.98 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 1.169 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found @@ -3635,19 +3671,19 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[#50,Task worker for ':',5,main]) completed. Took 10.408 secs. -:processTestResources (Thread[#50,Task worker for ':',5,main]) started. +:compileTestJava (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 4.663 secs. +:processTestResources (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.007 secs. -:testClasses (Thread[#50,Task worker for ':',5,main]) started. +:processTestResources (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.008 secs. +:testClasses (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. -:test (Thread[#50,Task worker for ':',5,main]) started. +:testClasses (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. +:test (Thread[#52,Task worker for ':' Thread 3,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Replacing org.junit.vintage:junit-vintage-engine:jar:5.8.2 -> org.junit.vintage:junit-vintage-engine:jar:debian @@ -3657,41 +3693,41 @@ Passing through org.opentest4j:opentest4j:jar:debian Passing through org.junit.platform:junit-platform-commons:jar:debian file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Up-to-date check for task ':test' took 1.34 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 0.691 secs. It is not up-to-date because: No history is available. file or directory '/build/reproducible-path/igv-2.18.5+dfsg/lib', not found -Starting process 'Gradle Test Executor 5'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath670641246658058787txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' +Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath7460188859911302267txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath3762669890793880514txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath5641636856738898782txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath12579917386139065837txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath6365558275915471319txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath15419153854444569350txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' -Starting process 'Gradle Test Executor 6'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath11714518224166584822txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath523538455903504160txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @/tmp/gradle-worker-classpath6090766182390113537txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 5' -Successfully started process 'Gradle Test Executor 3' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath16268684524902987107txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 5'. Working directory: /build/reproducible-path/igv-2.18.5+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=65.0 -Djava.home=/usr/lib/jvm/java-21-openjdk-arm64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/aarch64-linux-gnu/jni:/lib/aarch64-linux-gnu:/usr/lib/aarch64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=21.0.6+7-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=21 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-21 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-21 -Djava.version=21.0.6 -Djava.version.date=2025-01-21 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=21 -Djava.vm.vendor=Debian -Djava.vm.version=21.0.6+7-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/reproducible-path/igv-2.18.5+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dos.arch=aarch64 -Dos.name=Linux -Dos.version=6.1.0-30-cloud-arm64 -Dpath.separator=: -Dsamjdk.snappy.disable=true -Dstderr.encoding=ANSI_X3.4-1968 -Dstdout.encoding=ANSI_X3.4-1968 -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-21-openjdk-arm64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/reproducible-path/igv-2.18.5+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @/tmp/gradle-worker-classpath42303387078116408txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' Successfully started process 'Gradle Test Executor 1' -Successfully started process 'Gradle Test Executor 6' -Successfully started process 'Gradle Test Executor 4' Successfully started process 'Gradle Test Executor 2' +Successfully started process 'Gradle Test Executor 3' +Successfully started process 'Gradle Test Executor 5' +Successfully started process 'Gradle Test Executor 4' +Successfully started process 'Gradle Test Executor 6' +Gradle Test Executor 1 started executing tests. Gradle Test Executor 3 started executing tests. +Gradle Test Executor 4 started executing tests. +Gradle Test Executor 6 started executing tests. Gradle Test Executor 5 started executing tests. Gradle Test Executor 2 started executing tests. -Gradle Test Executor 6 started executing tests. -Gradle Test Executor 4 started executing tests. -Gradle Test Executor 1 started executing tests. org.broad.igv.batch.CommandExecutorTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [Mar 11,2026 05:13] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float - SEVERE [Mar 11,2026 05:13] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float - SEVERE [Mar 11,2026 05:13] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [Feb 07,2025 00:53] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [Feb 07,2025 00:53] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float + SEVERE [Feb 07,2025 00:53] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED @@ -3699,19 +3735,16 @@ org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED -org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED - org.broad.igv.batch.CommandListenerTest STANDARD_ERROR - Mar 11, 2026 5:13:43 AM java.util.prefs.FileSystemPreferences$1 run + Feb 07, 2025 12:53:43 AM java.util.prefs.FileSystemPreferences$1 run INFO: Created user preferences directory. -org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED - -org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED +org.broad.igv.batch.CommandListenerTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED +org.broad.igv.feature.genome.load.JsonGenomeLoaderTest > loadGenome SKIPPED -org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED +org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED org.broad.igv.sam.mods.BaseModificationsTest > testOrientBotFwd STANDARD_OUT 115 @@ -3719,25 +3752,9 @@ -90 -64 -org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED - -org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED - -org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED - -org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED - -org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED - -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED +org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED -org.broad.igv.batch.CommandListenerTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 0 0 0 @@ -3909,10 +3926,6 @@ 166 -90 166 167 -89 167 168 -88 168 - -org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED - -org.broad.igv.sam.mods.BaseModificationsTest > testHiFINegativeAlignment STANDARD_OUT 169 -87 169 170 -86 170 171 -85 171 @@ -4003,7 +4016,17 @@ org.broad.igv.sam.mods.BaseModificationCountsTest > incrementCounts2 SKIPPED -org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED +org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED + +org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED + +org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED + +org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED + +org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED + +org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED @@ -4013,10 +4036,21 @@ org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED +org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test + +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigInteract SKIPPED + +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigRmsk SKIPPED + +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigNarrowpeak SKIPPED + org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED +org.broad.igv.ucsc.bb.BBFeatureSourceTest > testBigGenePred SKIPPED + org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED @@ -4027,11 +4061,6 @@ org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED -org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED - -org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT - bam - org.broad.igv.sam.BAMFileReaderTest > testClose SKIPPED org.broad.igv.sam.BAMFileReaderTest > testQueryAgainstSam SKIPPED @@ -4046,47 +4075,52 @@ org.broad.igv.sam.cram.CRAMReaderTest > testRemoteBaiCram SKIPPED -org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED - -org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED - -org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED -Gradle Test Executor 3 finished executing tests. - org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED - -org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED +org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test org.broad.igv.ucsc.twobit.TwoBitSequenceTest > readSequenceRemote SKIPPED -org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT - dir/test.txt +org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -Gradle Test Executor 4 finished executing tests. -org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT + dir/test.txt org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT IntArrayList time: 1 -org.broad.igv.ucsc.bb.BBFileTest > testChromTree SKIPPED +org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT + bam + +org.broad.igv.util.blat.BlatClientTest > blatPOST SKIPPED + +org.broad.igv.util.blat.BlatClientTest > blatGET SKIPPED + +org.broad.igv.util.blat.BlatClientTest > blatTooShort SKIPPED Gradle Test Executor 5 finished executing tests. +Gradle Test Executor 3 finished executing tests. +org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED + +org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED + +org.broad.igv.ucsc.bb.BBFileTest > testChromTree SKIPPED +Gradle Test Executor 4 finished executing tests. + org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED org.broad.igv.util.blat.LegacyBlatClientTest > parseUCSCResult SKIPPED org.broad.igv.util.blat.LegacyBlatClientTest > parseCustomResult SKIPPED -Gradle Test Executor 1 finished executing tests. +Gradle Test Executor 2 finished executing tests. org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort: 606 + Random sort: 233 org.broad.igv.ucsc.bb.BBDataSourceTest > testBigWigZoom SKIPPED @@ -4100,28 +4134,28 @@ org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED -Gradle Test Executor 2 finished executing tests. +Gradle Test Executor 1 finished executing tests. org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort (reversed): 423 - Random sort (Arrays): 1679 - Sorted sort: 171 - Reverse sorted sort: 188 - Almost sorted sort: 232 + Random sort (reversed): 213 + Random sort (Arrays): 807 + Sorted sort: 86 + Reverse sorted sort: 92 + Almost sorted sort: 107 org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT - IntArrayList time: 112 + IntArrayList time: 57 org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED Gradle Test Executor 6 finished executing tests. -Finished generating test XML results (0.077 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/test-results/test +Finished generating test XML results (0.031 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.125 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/reports/tests/test -:test (Thread[#50,Task worker for ':',5,main]) completed. Took 10.004 secs. +Finished generating test html results (0.104 secs) into: /build/reproducible-path/igv-2.18.5+dfsg/build/reports/tests/test +:test (Thread[#52,Task worker for ':' Thread 3,5,main]) completed. Took 4.494 secs. -BUILD SUCCESSFUL in 35s +BUILD SUCCESSFUL in 15s 4 actionable tasks: 2 executed, 2 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4148,7 +4182,7 @@ jh_classpath -O--buildsystem=gradle jh_manifest -O--buildsystem=gradle Duplicate specification "version|V" for option "V" -Duplicate specification "version|V" for option "V" +Duplicate specification "V:s" for option "V" jh_exec -O--buildsystem=gradle jh_depends -O--buildsystem=gradle dh_strip_nondeterminism -O--buildsystem=gradle @@ -4167,12 +4201,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1309889/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1309889/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4009689 and its subdirectories -I: Current time: Wed Mar 11 05:14:26 -12 2026 -I: pbuilder-time-stamp: 1773249266 +I: removing directory /srv/workspace/pbuilder/1309889 and its subdirectories +I: Current time: Fri Feb 7 00:54:01 +14 2025 +I: pbuilder-time-stamp: 1738839241