Diff of the two buildlogs: -- --- b1/build.log 2025-02-07 06:34:12.905880551 +0000 +++ b2/build.log 2025-02-07 06:34:58.703809702 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Feb 6 18:33:36 -12 2025 -I: pbuilder-time-stamp: 1738910016 +I: Current time: Fri Mar 13 02:57:15 +14 2026 +I: pbuilder-time-stamp: 1773320235 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking libbio-db-gff-perl_1.7.4-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2981559/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/95797/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 12 12:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/95797/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/95797/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='f83d537d85de4e08b7aa79824704cf1c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2981559' - PS1='# ' - PS2='> ' + INVOCATION_ID=f2310a4e1c1d4be68ea4dbdffb54b503 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=95797 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/pbuilderrc_asdn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/b1 --logfile b1/build.log libbio-db-gff-perl_1.7.4-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/pbuilderrc_WbDZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bxBiffmk/b2 --logfile b2/build.log libbio-db-gff-perl_1.7.4-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2981559/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/95797/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -219,7 +251,7 @@ Get: 102 http://deb.debian.org/debian trixie/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] -Fetched 34.3 MB in 0s (215 MB/s) +Fetched 34.3 MB in 0s (158 MB/s) Preconfiguring packages ... Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) @@ -664,7 +696,11 @@ fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/libbio-db-gff-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-db-gff-perl_1.7.4-1_source.changes +I: user script /srv/workspace/pbuilder/95797/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/95797/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbio-db-gff-perl-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-db-gff-perl_1.7.4-1_source.changes dpkg-buildpackage: info: source package libbio-db-gff-perl dpkg-buildpackage: info: source version 1.7.4-1 dpkg-buildpackage: info: source distribution unstable @@ -688,49 +724,49 @@ dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' -cp lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm blib/lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm -cp lib/Bio/DB/GFF/Adaptor/dbi.pm blib/lib/Bio/DB/GFF/Adaptor/dbi.pm -cp lib/Bio/DB/GFF.pm blib/lib/Bio/DB/GFF.pm cp lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/oracle.pm -cp lib/Bio/DB/GFF/Adaptor/berkeleydb.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb.pm -cp lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm +cp lib/Bio/DB/GFF/Adaptor/memory.pm blib/lib/Bio/DB/GFF/Adaptor/memory.pm +cp lib/Bio/DB/GFF/Aggregator/clone.pm blib/lib/Bio/DB/GFF/Aggregator/clone.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_acembly.pm -cp lib/Bio/DB/GFF/Aggregator/match.pm blib/lib/Bio/DB/GFF/Aggregator/match.pm +cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm +cp lib/Bio/DB/GFF/Aggregator/gene.pm blib/lib/Bio/DB/GFF/Aggregator/gene.pm +cp lib/Bio/DB/GFF/Aggregator/processed_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/processed_transcript.pm +cp lib/Bio/DB/GFF/Aggregator/none.pm blib/lib/Bio/DB/GFF/Aggregator/none.pm cp lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm -cp lib/Bio/DB/GFF/Aggregator/alignment.pm blib/lib/Bio/DB/GFF/Aggregator/alignment.pm -cp lib/Bio/DB/GFF/Aggregator/transcript.pm blib/lib/Bio/DB/GFF/Aggregator/transcript.pm -cp lib/Bio/DB/GFF/Adaptor/dbi/pg.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm -cp lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm +cp lib/Bio/DB/GFF/Aggregator/match.pm blib/lib/Bio/DB/GFF/Aggregator/match.pm +cp lib/Bio/DB/GFF/Adaptor/memory/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/memory/iterator.pm cp lib/Bio/DB/GFF/Aggregator.pm blib/lib/Bio/DB/GFF/Aggregator.pm -cp lib/Bio/DB/GFF/Aggregator/none.pm blib/lib/Bio/DB/GFF/Aggregator/none.pm +cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm +cp lib/Bio/DB/GFF.pm blib/lib/Bio/DB/GFF.pm +cp lib/Bio/DB/GFF/Adaptor/biofetch.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch.pm cp lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysql.pm -cp lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm -cp lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm -cp lib/Bio/DB/GFF/Aggregator/clone.pm blib/lib/Bio/DB/GFF/Aggregator/clone.pm cp lib/Bio/DB/GFF/Aggregator/so_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/so_transcript.pm -cp lib/Bio/DB/GFF/Adaptor/memory/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/memory/iterator.pm +cp lib/Bio/DB/GFF/Adaptor/berkeleydb.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb.pm +cp lib/Bio/DB/GFF/Adaptor/dbi/pg.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/pg.pm +cp lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch_oracle.pm +cp lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm cp lib/Bio/DB/GFF/Aggregator/coding.pm blib/lib/Bio/DB/GFF/Aggregator/coding.pm -cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm -cp lib/Bio/DB/GFF/Adaptor/memory.pm blib/lib/Bio/DB/GFF/Adaptor/memory.pm +cp lib/Bio/DB/GFF/Aggregator/alignment.pm blib/lib/Bio/DB/GFF/Aggregator/alignment.pm cp lib/Bio/DB/GFF/Aggregator/orf.pm blib/lib/Bio/DB/GFF/Aggregator/orf.pm -cp lib/Bio/DB/GFF/Adaptor/biofetch.pm blib/lib/Bio/DB/GFF/Adaptor/biofetch.pm -cp lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm -cp lib/Bio/DB/GFF/Aggregator/processed_transcript.pm blib/lib/Bio/DB/GFF/Aggregator/processed_transcript.pm -cp lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm -cp lib/Bio/DB/GFF/Aggregator/gene.pm blib/lib/Bio/DB/GFF/Aggregator/gene.pm -cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm -cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm +cp lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm +cp lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm +cp lib/Bio/DB/GFF/Aggregator/transcript.pm blib/lib/Bio/DB/GFF/Aggregator/transcript.pm +cp lib/Bio/DB/GFF/Adaptor/dbi.pm blib/lib/Bio/DB/GFF/Adaptor/dbi.pm +cp lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm blib/lib/Bio/DB/GFF/Adaptor/dbi/iterator.pm +cp lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm blib/lib/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_refgene.pm +cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm cp lib/Bio/DB/GFF/Homol.pm blib/lib/Bio/DB/GFF/Homol.pm -cp lib/Bio/DB/GFF/RelSegment.pm blib/lib/Bio/DB/GFF/RelSegment.pm -cp lib/Bio/DB/GFF/Feature.pm blib/lib/Bio/DB/GFF/Feature.pm -cp lib/Bio/DB/GFF/Featname.pm blib/lib/Bio/DB/GFF/Featname.pm -cp lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm cp lib/Bio/DB/GFF/Typename.pm blib/lib/Bio/DB/GFF/Typename.pm -cp lib/Bio/DB/GFF/Segment.pm blib/lib/Bio/DB/GFF/Segment.pm +cp lib/Bio/DB/GFF/Feature.pm blib/lib/Bio/DB/GFF/Feature.pm +cp lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_genscan.pm +cp lib/Bio/DB/GFF/Segment.pm blib/lib/Bio/DB/GFF/Segment.pm +cp lib/Bio/DB/GFF/Featname.pm blib/lib/Bio/DB/GFF/Featname.pm cp lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm -cp lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_softberry.pm +cp lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm +cp lib/Bio/DB/GFF/RelSegment.pm blib/lib/Bio/DB/GFF/RelSegment.pm +cp lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm blib/lib/Bio/DB/GFF/Aggregator/ucsc_unigene.pm cp bin/bp_bulk_load_gff blib/script/bp_bulk_load_gff cp bin/bp_das_server blib/script/bp_das_server cp bin/bp_fast_load_gff blib/script/bp_fast_load_gff @@ -738,12 +774,12 @@ cp bin/bp_genbank2gff blib/script/bp_genbank2gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_das_server "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fast_load_gff -cp bin/bp_generate_histogram blib/script/bp_generate_histogram "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank2gff -cp bin/bp_load_gff blib/script/bp_load_gff +cp bin/bp_generate_histogram blib/script/bp_generate_histogram "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_generate_histogram -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_load_gff +cp bin/bp_load_gff blib/script/bp_load_gff cp bin/bp_meta_gff blib/script/bp_meta_gff +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_load_gff "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_meta_gff Manifying 6 pod documents Manifying 27 pod documents @@ -1095,7 +1131,7 @@ ok 275 ok All tests successful. -Files=4, Tests=325, 6 wallclock secs ( 0.06 usr 0.02 sys + 4.21 cusr 0.99 csys = 5.28 CPU) +Files=4, Tests=325, 6 wallclock secs ( 0.09 usr 0.01 sys + 4.62 cusr 0.98 csys = 5.70 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' create-stamp debian/debhelper-build-stamp @@ -1107,48 +1143,48 @@ Manifying 27 pod documents Manifying 16 pod documents Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Segment.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Typename.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/RelSegment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Featname.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Segment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Feature.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/RelSegment.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Typename.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Homol.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_softberry.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_genscan.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_unigene.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_refgene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_genscan.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_softberry.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/gene.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/processed_transcript.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_refgene.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/transcript.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/orf.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/alignment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/coding.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/so_transcript.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/clone.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/none.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/transcript.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/alignment.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/match.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/none.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/processed_transcript.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/gene.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/ucsc_acembly.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Aggregator/clone.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch_oracle.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/biofetch.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/iterator.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/iterator.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysql.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysql.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/pg_fts.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/iterator.pm +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/dbi/oracle.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/iterator.pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/perl5/Bio/DB/GFF/Adaptor/memory/feature_serializer.pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_meta_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_load_gff.1p Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man1/bp_generate_histogram.1p @@ -1198,13 +1234,13 @@ Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF::Adaptor::berkeleydb.3pm Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/share/man/man3/Bio::DB::GFF.3pm -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_load_gff -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_meta_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_generate_histogram Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_fast_load_gff +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_bulk_load_gff +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_load_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_genbank2gff +Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_meta_gff Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_das_server -Installing /build/reproducible-path/libbio-db-gff-perl-1.7.4/debian/libbio-db-gff-perl/usr/bin/bp_bulk_load_gff make[1]: Leaving directory '/build/reproducible-path/libbio-db-gff-perl-1.7.4' dh_installdocs dh_installchangelogs @@ -1227,12 +1263,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/95797/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/95797/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2981559 and its subdirectories -I: Current time: Thu Feb 6 18:34:11 -12 2025 -I: pbuilder-time-stamp: 1738910051 +I: removing directory /srv/workspace/pbuilder/95797 and its subdirectories +I: Current time: Fri Mar 13 02:57:57 +14 2026 +I: pbuilder-time-stamp: 1773320277