Diff of the two buildlogs: -- --- b1/build.log 2025-03-10 03:21:46.962141105 +0000 +++ b2/build.log 2025-03-10 05:19:54.483231492 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 9 12:23:28 -12 2025 -I: pbuilder-time-stamp: 1741566208 +I: Current time: Sun Apr 12 23:44:51 +14 2026 +I: pbuilder-time-stamp: 1775987091 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying avoid-gcc-crash.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/225134/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/921162/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 12 09:45 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/921162/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/921162/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='13bb7227d3be4612b0a49bcae9b6cfce' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='225134' - PS1='# ' - PS2='> ' + INVOCATION_ID=47b45b63c462488b8d2f7715ca9de495 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=921162 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IO7GyWZa/pbuilderrc_8Lvg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IO7GyWZa/b1 --logfile b1/build.log ncbi-igblast_1.20.0-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IO7GyWZa/pbuilderrc_6OZb --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IO7GyWZa/b2 --logfile b2/build.log ncbi-igblast_1.20.0-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/225134/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/921162/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -164,7 +196,7 @@ Get: 47 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libncbi-vdb-dev arm64 3.0.9+dfsg-2 [1587 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 time arm64 1.9-0.2+b1 [48.1 kB] -Fetched 29.1 MB in 0s (119 MB/s) +Fetched 29.1 MB in 0s (142 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19914 files and directories currently installed.) @@ -375,7 +407,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-igblast-1.20.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-igblast_1.20.0-2_source.changes +I: user script /srv/workspace/pbuilder/921162/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/921162/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-igblast-1.20.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-igblast_1.20.0-2_source.changes dpkg-buildpackage: info: source package ncbi-igblast dpkg-buildpackage: info: source version 1.20.0-2 dpkg-buildpackage: info: source distribution unstable @@ -403,74 +439,74 @@ done ) ; \ ) ; \ done -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: ../../../GCC*/build/new_module.sh: not found -/bin/sh: 6: 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../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or 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../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../GCC*/build/new_module.sh: No such file or directory make[1]: [debian/rules:39: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile c++/GCC* rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module @@ -977,7 +1013,7 @@ checking for libungif... no checking for libXpm... no checking for freetype-config... no -./src/build-system/configure: line 29815: cd: /nonexistent/first-build: No such file or directory +/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/build-system/configure: line 29815: cd: /nonexistent/second-build: No such file or directory checking for libftgl... no checking for libmagic... no checking for libmimetic... no @@ -1265,7 +1301,7 @@ Updating dependency information for /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/build-system/helpers/run_with_lock.c. gcc -c -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -DNCBI_APP_BUILT_AS=run_with_lock /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-z,relro run_with_lock.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lm -lpthread -o run_with_lock -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f run_with_lock /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/run_with_lock make[3]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/helpers' make[2]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/helpers' @@ -5522,7 +5558,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/corelib/ncbi_pool_balancer.cpp -o ncbi_pool_balancer.o /bin/rm -f libxncbi.a .libxncbi.a.stamp ar cr libxncbi.a ncbi_os_unix.o blob_storage.o ddumpable.o env_reg.o metareg.o ncbi_config.o ncbi_param.o ncbi_process.o ncbi_safe_static.o ncbi_signal.o ncbi_stack.o ncbi_system.o ncbiapp.o ncbiargs.o ncbiatomic.o ncbicfg.o ncbidbg.o ncbidiag.o ncbidiag_p.o ncbidll.o ncbienv.o ncbiexec.o ncbiexpt.o ncbifile.o ncbimempool.o ncbimtx.o ncbiobj.o ncbireg.o ncbistr.o ncbistre.o ncbithr.o ncbitime.o obj_store.o plugin_manager.o plugin_manager_store.o rwstreambuf.o stream_utils.o syslog.o version.o request_ctx.o request_control.o expr.o ncbi_strings.o resource_info.o interprocess_lock.o ncbi_autoinit.o perf_log.o ncbi_toolkit.o ncbierror.o ncbi_url.o ncbi_cookies.o guard.o ncbi_message.o request_status.o ncbi_fast.o ncbi_dbsvcmapper.o ncbi_pool_balancer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxncbi.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxncbi.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxncbi.a /bin/ln -f .xncbi.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xncbi.dep make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/corelib' @@ -5713,7 +5749,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/corelib/test_mt.cpp -o test_mt.o /bin/rm -f libtest_mt.a .libtest_mt.a.stamp ar cr libtest_mt.a test_mt.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtest_mt.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libtest_mt.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libtest_mt.a /bin/ln -f .test_mt.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.test_mt.dep make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/corelib' @@ -8930,7 +8966,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/crc32_sse.cpp -o crc32_sse.o /bin/rm -f libxutil.a .libxutil.a.stamp ar cr libxutil.a random_gen.o utf8.o checksum.o checksum_cityhash.o checksum_farmhash.o bytesrc.o strbuffer.o itree.o smalldns.o thread_pool_old.o ddump_viewer.o strsearch.o logrotate.o format_guess.o ascii85.o md5.o file_obsolete.o unicode.o dictionary.o dictionary_util.o thread_nonstop.o sgml_entity.o static_set.o transmissionrw.o miscmath.o mutex_pool.o ncbi_cache.o line_reader.o util_exception.o uttp.o multi_writer.o itransaction.o thread_pool.o thread_pool_ctrl.o scheduler.o distribution.o rangelist.o util_misc.o histogram_binning.o table_printer.o retry_ctx.o stream_source.o file_manifest.o cache_async.o multipattern_search.o crc32_sse.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxutil.a /bin/ln -f .xutil.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xutil.dep make[3]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util' @@ -9005,7 +9041,7 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/regexp -DHAVE_CONFIG_H -DPCRE_NO_UTF16 -DPCRE_NO_UTF32 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/regexp/pcreposix.c -o pcreposix.o /bin/rm -f libregexp.a .libregexp.a.stamp ar cr libregexp.a pcre_byte_order.o pcre_chartables.o pcre_compile.o pcre_config.o pcre_dfa_exec.o pcre_exec.o pcre_fullinfo.o pcre_get.o pcre_globals.o pcre_jit_compile.o pcre_maketables.o pcre_newline.o pcre_ord2utf8.o pcre_refcount.o pcre_string_utils.o pcre_study.o pcre_tables.o pcre_ucd.o pcre_valid_utf8.o pcre_version.o pcre_xclass.o pcreposix.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libregexp.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libregexp.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libregexp.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libregexp.a /bin/ln -f .regexp.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.regexp.dep make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/regexp' @@ -9016,7 +9052,7 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/regexp -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/regexp/.. -DHAVE_CONFIG_H -DSUPPORT_PCRE8 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -DNCBI_APP_BUILT_AS=test_pcre /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/regexp/pcretest.c -o pcretest.o /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/regexp -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/regexp/.. -DHAVE_CONFIG_H -DSUPPORT_PCRE8 -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -DNCBI_APP_BUILT_AS=test_pcre /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/regexp/pcre_printint.c -o pcre_printint.o /usr/bin/g++ -std=gnu++17 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 pcretest.o pcre_printint.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lregexp -o test_pcre -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f test_pcre /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f test_pcre /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f test_pcre /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/test_pcre make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/regexp' make[3]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/regexp' @@ -9320,7 +9356,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/regexp -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/regexp /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/xregexp/convert_dates_iso8601.cpp -o convert_dates_iso8601.o /bin/rm -f libxregexp.a .libxregexp.a.stamp ar cr libxregexp.a regexp.o arg_regexp.o mask_regexp.o convert_dates_iso8601.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxregexp.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxregexp.a /bin/ln -f .xregexp.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xregexp.dep make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/xregexp' @@ -9399,7 +9435,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/xregexp/regexp_template_tester.cpp -o regexp_template_tester.o /bin/rm -f libxregexp_template_tester.a .libxregexp_template_tester.a.stamp ar cr libxregexp_template_tester.a regexp_template_tester.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxregexp_template_tester.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxregexp_template_tester.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxregexp_template_tester.a /bin/ln -f .xregexp_template_tester.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xregexp_template_tester.dep make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/xregexp' @@ -13977,7 +14013,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/build-system/project_tree_builder/mac_prj_generator.cpp -o mac_prj_generator.o /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -DNCBI_APP_BUILT_AS=project_tree_builder /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/build-system/project_tree_builder/prj_file_collector.cpp -o prj_file_collector.o /usr/bin/g++ -std=gnu++17 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 file_contents.o msvc_configure.o msvc_makefile.o msvc_masterproject_generator.o msvc_prj_generator.o msvc_prj_utils.o msvc_project_context.o msvc_site.o msvc_sln_generator.o proj_builder_app.o proj_datatool_generated_src.o proj_item.o proj_tree.o proj_tree_builder.o proj_src_resolver.o proj_utils.o resolver.o msvc_configure_prj_generator.o proj_projects.o msvc_dlls_info.o msvc_prj_files_collector.o configurable_file.o ptb_gui.o ptb_registry.o mac_prj_generator.o prj_file_collector.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lxutil -lxncbi -lxregexp -lregexp -lm -lpthread -o project_tree_builder -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f project_tree_builder /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f project_tree_builder /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/project_tree_builder make[3]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder' make[2]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder' @@ -17544,7 +17580,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.a .libxser.a.stamp ar cr libxser.a hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxser.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxser.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxser.a /bin/ln -f .xser.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xser.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial' @@ -21998,7 +22034,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o /usr/bin/g++ -std=gnu++17 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f datatool /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/datatool make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/datatool' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/datatool' @@ -22092,7 +22128,7 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/genomecoll' cd /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/new_module.sh gencoll_client all Waiting for /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/genomecoll/make_asn.lock. -Acquired /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/genomecoll/make_asn.lock for PID 709252 (make_asn) +Acquired /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/genomecoll/make_asn.lock for PID 1171192 (make_asn) /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++ builddir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build DATATOOL=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/genomecoll' /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/datatool -oR /build/reproducible-path/ncbi-igblast-1.20.0/c++ \ @@ -23299,7 +23335,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.a .libalign_format.a.stamp ar cr libalign_format.a format_flags.o align_format_util.o showdefline.o showalign.o tabular.o vectorscreen.o seqalignfilter.o taxFormat.o aln_printer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libalign_format.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libalign_format.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libalign_format.a /bin/ln -f .align_format.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.align_format.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/align_format' @@ -23528,7 +23564,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/biblio/citation_base.cpp -o citation_base.o /bin/rm -f libbiblio.a .libbiblio.a.stamp ar cr libbiblio.a biblio__.o biblio___.o citation_base.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libbiblio.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libbiblio.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libbiblio.a /bin/ln -f .biblio.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.biblio.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/biblio' @@ -23538,22 +23574,22 @@ make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/Makefile.legacy_blast builddir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast all make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/legacy_blast.pl make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/Makefile.update_blastdb builddir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast all make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/update_blastdb.pl make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast all make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/get_species_taxids.sh make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast all make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/cleanup-blastdb-volumes.py make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' @@ -23690,7 +23726,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o /bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp ar cr libblast_app_util.a blast_app_util.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libblast_app_util.a /bin/ln -f .blast_app_util.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.blast_app_util.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' @@ -23790,7 +23826,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o /bin/rm -f libblast_services.a .libblast_services.a.stamp ar cr libblast_services.a blast_services.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libblast_services.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libblast_services.a /bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.blast_services.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/services' @@ -23886,7 +23922,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -D_DEBUGGING -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/blast/blast_sra_input/blast_sra_input.cpp -o blast_sra_input.o /bin/rm -f libblast_sra_input.a .libblast_sra_input.a.stamp ar cr libblast_sra_input.a blast_sra_input.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_sra_input.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_sra_input.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libblast_sra_input.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libblast_sra_input.a /bin/ln -f .blast_sra_input.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.blast_sra_input.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blast_sra_input' @@ -24046,7 +24082,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/blastdb/blastdb___.cpp -o blastdb___.o /bin/rm -f libblastdb.a .libblastdb.a.stamp ar cr libblastdb.a blastdb__.o blastdb___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libblastdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libblastdb.a /bin/ln -f .blastdb.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.blastdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastdb' @@ -24413,7 +24449,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o /bin/rm -f libblastdb_format.a .libblastdb_format.a.stamp ar cr libblastdb_format.a seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libblastdb_format.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libblastdb_format.a /bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.blastdb_format.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/blastdb_format' @@ -26160,7 +26196,7 @@ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o /bin/rm -f libblastinput.a .libblastinput.a.stamp ar cr libblastinput.a blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libblastinput.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libblastinput.a /bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.blastinput.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blastinput' @@ -26343,7 +26379,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o /bin/rm -f libblastxml.a .libblastxml.a.stamp ar cr libblastxml.a blastxml__.o blastxml___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libblastxml.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libblastxml.a /bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.blastxml.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastxml' @@ -26526,7 +26562,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o /bin/rm -f libblastxml2.a .libblastxml2.a.stamp ar cr libblastxml2.a blastxml2__.o blastxml2___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libblastxml2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libblastxml2.a /bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.blastxml2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastxml2' @@ -26565,7 +26601,7 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o /bin/rm -f libcomposition_adjustment.a .libcomposition_adjustment.a.stamp ar cr libcomposition_adjustment.a compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libcomposition_adjustment.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libcomposition_adjustment.a /bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.composition_adjustment.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/composition_adjustment' @@ -28423,12 +28459,12 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/dbapi/driver/dbapi_pool_balancer.cpp -o dbapi_pool_balancer.o /bin/rm -f libdbapi_driver.a .libdbapi_driver.a.stamp ar cr libdbapi_driver.a handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libdbapi_driver.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libdbapi_driver.a /bin/ln -f .dbapi_driver.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.dbapi_driver.dep /bin/rm -f libdbapi_driver-dll.so .libdbapi_driver-dll.so.stamp /usr/bin/g++ -std=gnu++17 -shared -o libdbapi_driver-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 -fPIC handle_stack.o numeric_convert.o parameters.o exception.o interfaces.o public.o types.o memory_store.o pointer_pot.o driver_mgr.o dbapi_driver_conn_mgr.o dbapi_conn_factory.o dbapi_svc_mapper.o dbapi_driver_utils.o dbapi_impl_cmd.o dbapi_impl_connection.o dbapi_impl_context.o dbapi_impl_result.o dbapi_driver_conn_params.o dbapi_driver_exception_storage.o dbapi_object_convert.o dbapi_driver_convert.o dbapi_pool_balancer.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libdbapi_driver-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libdbapi_driver-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libdbapi_driver-dll.so /bin/ln -f .dbapi_driver-dll.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.dbapi_driver-dll.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver' @@ -28660,7 +28696,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/efetch/efetch___.cpp -o efetch___.o /bin/rm -f libefetch.a .libefetch.a.stamp ar cr libefetch.a efetch__.o efetch___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libefetch.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libefetch.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libefetch.a /bin/ln -f .efetch.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.efetch.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/efetch' @@ -28843,7 +28879,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o /bin/rm -f libegquery.a .libegquery.a.stamp ar cr libegquery.a egquery__.o egquery___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libegquery.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libegquery.a /bin/ln -f .egquery.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.egquery.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/egquery' @@ -29026,7 +29062,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o /bin/rm -f libehistory.a .libehistory.a.stamp ar cr libehistory.a ehistory__.o ehistory___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libehistory.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libehistory.a /bin/ln -f .ehistory.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ehistory.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/ehistory' @@ -29209,7 +29245,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o /bin/rm -f libeinfo.a .libeinfo.a.stamp ar cr libeinfo.a einfo__.o einfo___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libeinfo.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libeinfo.a /bin/ln -f .einfo.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.einfo.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/einfo' @@ -29392,7 +29428,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o /bin/rm -f libelink.a .libelink.a.stamp ar cr libelink.a elink__.o elink___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libelink.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libelink.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libelink.a /bin/ln -f .elink.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.elink.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/elink' @@ -29575,7 +29611,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o /bin/rm -f libepost.a .libepost.a.stamp ar cr libepost.a epost__.o epost___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libepost.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libepost.a /bin/ln -f .epost.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.epost.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/epost' @@ -29758,7 +29794,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o /bin/rm -f libesearch.a .libesearch.a.stamp ar cr libesearch.a esearch__.o esearch___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libesearch.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libesearch.a /bin/ln -f .esearch.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.esearch.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/esearch' @@ -29941,7 +29977,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o /bin/rm -f libespell.a .libespell.a.stamp ar cr libespell.a espell__.o espell___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libespell.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libespell.a /bin/ln -f .espell.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.espell.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/espell' @@ -30125,7 +30161,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o /bin/rm -f libesummary.a .libesummary.a.stamp ar cr libesummary.a esummary__.o esummary___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesummary.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libesummary.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libesummary.a /bin/ln -f .esummary.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.esummary.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/esummary' @@ -30932,7 +30968,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o /bin/rm -f libeutils.a .libeutils.a.stamp ar cr libeutils.a eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libeutils.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libeutils.a /bin/ln -f .eutils.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.eutils.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/api' @@ -31114,7 +31150,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o /bin/rm -f libgbseq.a .libgbseq.a.stamp ar cr libgbseq.a gbseq__.o gbseq___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libgbseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libgbseq.a /bin/ln -f .gbseq.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.gbseq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/gbseq' @@ -31340,7 +31376,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=GENEINFO -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o /bin/rm -f libgene_info.a .libgene_info.a.stamp ar cr libgene_info.a gene_info.o gene_info_reader.o file_utils.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libgene_info.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libgene_info.a /bin/ln -f .gene_info.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.gene_info.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/gene_info_reader' @@ -31594,7 +31630,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/general/uoconv.cpp -o uoconv.o /bin/rm -f libgeneral.a .libgeneral.a.stamp ar cr libgeneral.a general__.o general___.o uoconv.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libgeneral.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libgeneral.a /bin/ln -f .general.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.general.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/general' @@ -31761,7 +31797,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o /bin/rm -f libgenome_collection.a .libgenome_collection.a.stamp ar cr libgenome_collection.a genome_collection__.o genome_collection___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libgenome_collection.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libgenome_collection.a /bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.genome_collection.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/genomecoll' @@ -31921,7 +31957,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/id1/id1___.cpp -o id1___.o /bin/rm -f libid1.a .libid1.a.stamp ar cr libid1.a id1__.o id1___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libid1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libid1.a /bin/ln -f .id1.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.id1.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/id1' @@ -32081,7 +32117,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/id2/id2___.cpp -o id2___.o /bin/rm -f libid2.a .libid2.a.stamp ar cr libid2.a id2__.o id2___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libid2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libid2.a /bin/ln -f .id2.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.id2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/id2' @@ -32184,7 +32220,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o /bin/rm -f libigblast.a .libigblast.a.stamp ar cr libigblast.a igblast.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libigblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libigblast.a /bin/ln -f .igblast.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.igblast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/igblast' @@ -32224,7 +32260,7 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/lmdb /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/lmdb/midl.c -o midl.o /bin/rm -f liblmdb.a .liblmdb.a.stamp ar cr liblmdb.a mdb.o midl.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblmdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f liblmdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f liblmdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/liblmdb.a /bin/ln -f .lmdb.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.lmdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdb' @@ -32406,7 +32442,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/medlars/medlars___.cpp -o medlars___.o /bin/rm -f libmedlars.a .libmedlars.a.stamp ar cr libmedlars.a medlars__.o medlars___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedlars.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libmedlars.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libmedlars.a /bin/ln -f .medlars.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.medlars.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/medlars' @@ -32566,7 +32602,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/medline/medline___.cpp -o medline___.o /bin/rm -f libmedline.a .libmedline.a.stamp ar cr libmedline.a medline__.o medline___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmedline.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libmedline.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libmedline.a /bin/ln -f .medline.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.medline.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/medline' @@ -32755,7 +32791,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/mla/mla___.cpp -o mla___.o /bin/rm -f libmla.a .libmla.a.stamp ar cr libmla.a mla__.o mla___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmla.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libmla.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libmla.a /bin/ln -f .mla.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.mla.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/mla' @@ -32920,7 +32956,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o /bin/rm -f libmlacli.a .libmlacli.a.stamp ar cr libmlacli.a mla_client.o mla_client_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libmlacli.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libmlacli.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libmlacli.a /bin/ln -f .mlacli.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.mlacli.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/mla' @@ -33184,7 +33220,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb.a .libncbi_xloader_blastdb.a.stamp ar cr libncbi_xloader_blastdb.a bdbloader.o cached_sequence.o local_blastdb_adapter.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xloader_blastdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xloader_blastdb.a /bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xloader_blastdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/blastdb' @@ -33350,7 +33386,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTDB -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o /bin/rm -f libncbi_xloader_blastdb_rmt.a .libncbi_xloader_blastdb_rmt.a.stamp ar cr libncbi_xloader_blastdb_rmt.a bdbloader_rmt.o remote_blastdb_adapter.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xloader_blastdb_rmt.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xloader_blastdb_rmt.a /bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xloader_blastdb_rmt.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/blastdb' @@ -33510,7 +33546,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/pub/pub___.cpp -o pub___.o /bin/rm -f libpub.a .libpub.a.stamp ar cr libpub.a pub__.o pub___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpub.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libpub.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libpub.a /bin/ln -f .pub.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.pub.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pub' @@ -35439,7 +35475,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/seq -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/seq -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.a .libseq.a.stamp ar cr libseq.a seq__.o seqalign__.o seqblock__.o seqfeat__.o seqloc__.o seqres__.o seqtable__.o seq___.o seqalign___.o seqblock___.o seqfeat___.o seqloc___.o seqres___.o seqtable___.o seqport_util.o seq_id_tree.o seq_id_handle.o seq_id_mapper.o seq_loc_mapper_base.o seq_align_mapper_base.o seqlocinfo.o so_map.o seq_loc_from_string.o seq_loc_reverse_complementer.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libseq.a /bin/ln -f .seq.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.seq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seq' @@ -35599,7 +35635,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o /bin/rm -f libseqcode.a .libseqcode.a.stamp ar cr libseqcode.a seqcode__.o seqcode___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libseqcode.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libseqcode.a /bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.seqcode.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqcode' @@ -35759,7 +35795,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o /bin/rm -f libseqedit.a .libseqedit.a.stamp ar cr libseqedit.a seqedit__.o seqedit___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libseqedit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libseqedit.a /bin/ln -f .seqedit.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.seqedit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqedit' @@ -36001,7 +36037,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/seqset/gb_release_file.cpp -o gb_release_file.o /bin/rm -f libseqset.a .libseqset.a.stamp ar cr libseqset.a seqset__.o seqset___.o gb_release_file.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqset.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libseqset.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libseqset.a /bin/ln -f .seqset.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.seqset.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqset' @@ -36161,7 +36197,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o /bin/rm -f libseqsplit.a .libseqsplit.a.stamp ar cr libseqsplit.a seqsplit__.o seqsplit___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libseqsplit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libseqsplit.a /bin/ln -f .seqsplit.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.seqsplit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqsplit' @@ -36592,7 +36628,7 @@ u++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libsequtil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libsequtil.a /bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.sequtil.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/sequtil' @@ -36752,7 +36788,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/submit/submit___.cpp -o submit___.o /bin/rm -f libsubmit.a .libsubmit.a.stamp ar cr libsubmit.a submit__.o submit___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsubmit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libsubmit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libsubmit.a /bin/ln -f .submit.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.submit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/submit' @@ -37692,7 +37728,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o lzo.o zlib.o zstd.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxcompress.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxcompress.a /bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xcompress.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/api' @@ -39598,7 +39634,7 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/connect/mbedtls -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/connect/mbedtls/ssl_tls13_keys.c -o mbedtls/ssl_tls13_keys.o /bin/rm -f libxconnect.a .libxconnect.a.stamp ar cr libxconnect.a ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_lbdns.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o mbedtls/aes.o mbedtls/aesni.o mbedtls/arc4.o mbedtls/aria.o mbedtls/asn1parse.o mbedtls/asn1write.o mbedtls/base64.o mbedtls/bignum.o mbedtls/blowfish.o mbedtls/camellia.o mbedtls/ccm.o mbedtls/chacha20.o mbedtls/chachapoly.o mbedtls/cipher.o mbedtls/cipher_wrap.o mbedtls/cmac.o mbedtls/constant_time.o mbedtls/ctr_drbg.o mbedtls/des.o mbedtls/dhm.o mbedtls/ecdh.o mbedtls/ecdsa.o mbedtls/ecjpake.o mbedtls/ecp.o mbedtls/ecp_curves.o mbedtls/entropy.o mbedtls/entropy_poll.o mbedtls/error.o mbedtls/gcm.o mbedtls/havege.o mbedtls/hkdf.o mbedtls/hmac_drbg.o mbedtls/md.o mbedtls/md2.o mbedtls/md4.o mbedtls/mbedtls_md5.o mbedtls/memory_buffer_alloc.o mbedtls/mps_reader.o mbedtls/mps_trace.o mbedtls/nist_kw.o mbedtls/oid.o mbedtls/padlock.o mbedtls/pem.o mbedtls/pk.o mbedtls/pk_wrap.o mbedtls/pkcs12.o mbedtls/pkcs5.o mbedtls/pkparse.o mbedtls/pkwrite.o mbedtls/platform.o mbedtls/platform_util.o mbedtls/poly1305.o mbedtls/psa_crypto.o mbedtls/psa_crypto_aead.o mbedtls/psa_crypto_cipher.o mbedtls/psa_crypto_client.o mbedtls/psa_crypto_driver_wrappers.o mbedtls/psa_crypto_ecp.o mbedtls/psa_crypto_hash.o mbedtls/psa_crypto_mac.o mbedtls/psa_crypto_rsa.o mbedtls/psa_crypto_se.o mbedtls/psa_crypto_slot_management.o mbedtls/psa_crypto_storage.o mbedtls/psa_its_file.o mbedtls/ripemd160.o mbedtls/rsa.o mbedtls/rsa_internal.o mbedtls/sha1.o mbedtls/sha256.o mbedtls/sha512.o mbedtls/threading.o mbedtls/timing.o mbedtls/mbedtls_version.o mbedtls/version_features.o mbedtls/xtea.o mbedtls/certs.o mbedtls/pkcs11.o mbedtls/x509.o mbedtls/x509_create.o mbedtls/x509_crl.o mbedtls/x509_crt.o mbedtls/x509_csr.o mbedtls/x509write_crt.o mbedtls/x509write_csr.o mbedtls/debug.o mbedtls/net_sockets.o mbedtls/ssl_cache.o mbedtls/ssl_ciphersuites.o mbedtls/ssl_cli.o mbedtls/ssl_cookie.o mbedtls/ssl_msg.o mbedtls/ssl_srv.o mbedtls/ssl_ticket.o mbedtls/ssl_tls.o mbedtls/ssl_tls13_keys.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxconnect.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxconnect.a /bin/ln -f .xconnect.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xconnect.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect' @@ -45691,7 +45727,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.a .libxobjmgr.a.stamp ar cr libxobjmgr.a seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxobjmgr.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxobjmgr.a /bin/ln -f .xobjmgr.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xobjmgr.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr' @@ -46854,12 +46890,12 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o /bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xreader.a /bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xreader.dep /bin/rm -f libncbi_xreader-dll.so .libncbi_xreader-dll.so.stamp /usr/bin/g++ -std=gnu++17 -shared -o libncbi_xreader-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xreader-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xreader-dll.so /bin/ln -f .ncbi_xreader-dll.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xreader-dll.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank' @@ -47484,12 +47520,12 @@ _loader_impl.o /bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xloader_genbank.a /bin/ln -f .ncbi_xloader_genbank.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xloader_genbank.dep /bin/rm -f libncbi_xloader_genbank-dll.so .libncbi_xloader_genbank-dll.so.stamp /usr/bin/g++ -std=gnu++17 -shared -o libncbi_xloader_genbank-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lncbi_xreader-dll -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lz -lbz2 -lzstd -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xloader_genbank-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xloader_genbank-dll.so /bin/ln -f .ncbi_xloader_genbank-dll.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xloader_genbank-dll.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank' @@ -47687,12 +47723,12 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o /bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xreader_cache.a /bin/ln -f .ncbi_xreader_cache.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xreader_cache.dep /bin/rm -f libncbi_xreader_cache-dll.so .libncbi_xreader_cache-dll.so.stamp /usr/bin/g++ -std=gnu++17 -shared -o libncbi_xreader_cache-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lncbi_xreader-dll -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xreader_cache-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xreader_cache-dll.so /bin/ln -f .ncbi_xreader_cache-dll.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xreader_cache-dll.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/cache' @@ -47800,12 +47836,12 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o /bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp ar cr libncbi_xreader_id1.a reader_id1.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xreader_id1.a /bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xreader_id1.dep /bin/rm -f libncbi_xreader_id1-dll.so .libncbi_xreader_id1-dll.so.stamp /usr/bin/g++ -std=gnu++17 -shared -o libncbi_xreader_id1-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 -fPIC reader_id1.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lncbi_xreader-dll -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xreader_id1-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xreader_id1-dll.so /bin/ln -f .ncbi_xreader_id1-dll.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xreader_id1-dll.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/id1' @@ -47913,12 +47949,12 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o /bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp ar cr libncbi_xreader_id2.a reader_id2.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xreader_id2.a /bin/ln -f .ncbi_xreader_id2.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xreader_id2.dep /bin/rm -f libncbi_xreader_id2-dll.so .libncbi_xreader_id2-dll.so.stamp /usr/bin/g++ -std=gnu++17 -shared -o libncbi_xreader_id2-dll.so -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 -fPIC reader_id2.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libncbi_xreader_id2-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libncbi_xreader_id2-dll.so /bin/ln -f .ncbi_xreader_id2-dll.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.ncbi_xreader_id2-dll.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/id2' @@ -48790,7 +48826,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o /bin/rm -f libproteinkmer.a .libproteinkmer.a.stamp ar cr libproteinkmer.a blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libproteinkmer.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libproteinkmer.a /bin/ln -f .proteinkmer.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.proteinkmer.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/proteinkmer' @@ -48951,7 +48987,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/pubseq_gateway/client/psg_client_transport.cpp -o psg_client_transport.o /bin/rm -f libpsg_client.a .libpsg_client.a.stamp ar cr libpsg_client.a psg_client.o psg_client_transport.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpsg_client.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libpsg_client.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libpsg_client.a /bin/ln -f .psg_client.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.psg_client.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/client' @@ -49111,7 +49147,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/pubmed/pubmed___.cpp -o pubmed___.o /bin/rm -f libpubmed.a .libpubmed.a.stamp ar cr libpubmed.a pubmed__.o pubmed___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libpubmed.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libpubmed.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libpubmed.a /bin/ln -f .pubmed.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.pubmed.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pubmed' @@ -49281,7 +49317,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o /bin/rm -f libscoremat.a .libscoremat.a.stamp ar cr libscoremat.a scoremat__.o scoremat___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libscoremat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libscoremat.a /bin/ln -f .scoremat.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.scoremat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/scoremat' @@ -51043,7 +51079,7 @@ BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/lmdb -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/lmdb /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o /bin/rm -f libseqdb.a .libseqdb.a.stamp ar cr libseqdb.a seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libseqdb.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libseqdb.a /bin/ln -f .seqdb.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.seqdb.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader' @@ -51777,7 +51813,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o /bin/rm -f libseqmasks_io.a .libseqmasks_io.a.stamp ar cr libseqmasks_io.a mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libseqmasks_io.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libseqmasks_io.a /bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.seqmasks_io.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/seqmasks_io' @@ -52471,13 +52507,13 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc -I//usr/include/os/linux -I//usr/include/os/unix -I//usr/include/cc/gcc/arm64 -I//usr/include/cc/gcc -D_DEBUGGING -DNCBI_SRAREAD_EXPORTS /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/sra/readers/sra/snpread.cpp -o snpread.o /bin/rm -f libsraread.a .libsraread.a.stamp ar cr libsraread.a sraread.o vdbread.o kdbread.o csraread.o wgsresolver.o wgsresolver_impl.o wgsread.o graphread.o snpread.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsraread.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsraread.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libsraread.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libsraread.a /bin/ln -f .sraread.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.sraread.dep /bin/rm -f libsraread-dll.so .libsraread-dll.so.stamp /usr/bin/g++ -std=gnu++17 -shared -o libsraread-dll.so -Wl,-rpath,//usr/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 -fPIC sraread.o vdbread.o kdbread.o csraread.o wgsresolver.o wgsresolver_impl.o wgsread.o graphread.o snpread.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -L//usr/lib -lncbi-vdb -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lbz2 -lz -lm -lpthread : libsraread-dll.so -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsraread-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsraread-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libsraread-dll.so /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libsraread-dll.so /bin/ln -f .sraread-dll.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.sraread-dll.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/sra/readers/sra' @@ -52504,7 +52540,7 @@ /usr/bin/gcc -std=gnu18 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libtables.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libtables.a /bin/ln -f .tables.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.tables.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/tables' @@ -52995,7 +53031,7 @@ roducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o /bin/rm -f libtaxon1.a .libtaxon1.a.stamp ar cr libtaxon1.a taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libtaxon1.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libtaxon1.a /bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.taxon1.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/taxon1' @@ -53250,7 +53286,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/taxon3/taxon3.cpp -o taxon3.o /bin/rm -f libtaxon3.a .libtaxon3.a.stamp ar cr libtaxon3.a taxon3__.o taxon3___.o taxon3.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon3.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libtaxon3.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libtaxon3.a /bin/ln -f .taxon3.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.taxon3.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/taxon3' @@ -53410,7 +53446,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o /bin/rm -f libuilist.a .libuilist.a.stamp ar cr libuilist.a uilist__.o uilist___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libuilist.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libuilist.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libuilist.a /bin/ln -f .uilist.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.uilist.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/uilist' @@ -53502,7 +53538,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/profile/rtprofile.cpp -o rtprofile.o /bin/rm -f libutrtprof.a .libutrtprof.a.stamp ar cr libutrtprof.a rtprofile.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libutrtprof.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libutrtprof.a /bin/ln -f .utrtprof.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.utrtprof.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/profile' @@ -53688,7 +53724,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/valid/valid___.cpp -o valid___.o /bin/rm -f libvalid.a .libvalid.a.stamp ar cr libvalid.a valid__.o valid___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvalid.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libvalid.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libvalid.a /bin/ln -f .valid.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.valid.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/valid' @@ -53848,7 +53884,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/variation/variation___.cpp -o variation___.o /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libvariation.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libvariation.a /bin/ln -f .variation.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.variation.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation' @@ -54996,7 +55032,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/align/util/best_placement.cpp -o best_placement.o /bin/rm -f libxalgoalignutil.a .libxalgoalignutil.a.stamp ar cr libxalgoalignutil.a align_shadow.o blast_tabular.o score_builder.o score_lookup.o align_filter.o genomic_compart.o patch_sequence.o align_compare.o align_sort.o depth_filter.o tabular_fmt.o collection_score.o named_collection_score_impl.o best_placement.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoalignutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoalignutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxalgoalignutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxalgoalignutil.a /bin/ln -f .xalgoalignutil.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xalgoalignutil.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/align/util' @@ -55439,7 +55475,7 @@ ex_search.o /bin/rm -f libxalgoblastdbindex.a .libxalgoblastdbindex.a.stamp ar cr libxalgoblastdbindex.a sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxalgoblastdbindex.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxalgoblastdbindex.a /bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xalgoblastdbindex.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/dbindex' @@ -55539,7 +55575,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/dustmask/symdust.cpp -o symdust.o /bin/rm -f libxalgodustmask.a .libxalgodustmask.a.stamp ar cr libxalgodustmask.a symdust.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxalgodustmask.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxalgodustmask.a /bin/ln -f .xalgodustmask.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xalgodustmask.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/dustmask' @@ -57435,7 +57471,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/regexp -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include/util/regexp /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/sequence/micro_introns.cpp -o micro_introns.o /bin/rm -f libxalgoseq.a .libxalgoseq.a.stamp ar cr libxalgoseq.a adapter_search.o cpg.o nuc_prop.o orf.o prot_prop.o regexp_loc.o seq_match.o restriction.o antigenic.o coiled_coil.o signal_seq.o make_cdr_prods.o find_pattern.o gene_model.o project_exons.o transform_align.o annot_compare.o compare_feats.o align_group.o masking_delta.o align_cleanup.o util.o gap_analysis.o internal_stops.o micro_introns.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxalgoseq.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxalgoseq.a /bin/ln -f .xalgoseq.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xalgoseq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/sequence' @@ -61747,7 +61783,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o /bin/rm -f libxalgowinmask.a .libxalgowinmask.a.stamp ar cr libxalgowinmask.a seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxalgowinmask.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxalgowinmask.a /bin/ln -f .xalgowinmask.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xalgowinmask.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/winmask' @@ -63647,7 +63683,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o /bin/rm -f libxalnmgr.a .libxalnmgr.a.stamp ar cr libxalnmgr.a aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxalnmgr.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxalnmgr.a /bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xalnmgr.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/alnmgr' @@ -70497,7 +70533,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLAST -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o /bin/rm -f libxblast.a .libxblast.a.stamp ar cr libxblast.a .core_aa_ungapped.o .core_blast_diagnostics.o .core_blast_engine.o .core_blast_extend.o .core_blast_filter.o .core_blast_gapalign.o .core_blast_hits.o .core_blast_hspstream.o .core_blast_itree.o .core_blast_kappa.o .core_blast_lookup.o .core_blast_aalookup.o .core_blast_aascan.o .core_blast_nalookup.o .core_blast_nascan.o .core_blast_message.o .core_blast_options.o .core_blast_psi.o .core_na_ungapped.o .core_blast_psi_priv.o .core_blast_seg.o .core_blast_seqsrc.o .core_blast_setup.o .core_blast_stat.o .core_blast_traceback.o .core_blast_util.o .core_gapinfo.o .core_greedy_align.o .core_hspfilter_collector.o .core_hspfilter_besthit.o .core_hspfilter_culling.o .core_link_hsps.o .core_lookup_util.o .core_lookup_wrap.o .core_matrix_freq_ratios.o .core_ncbi_std.o .core_ncbi_math.o .core_blast_encoding.o .core_pattern.o .core_phi_extend.o .core_phi_gapalign.o .core_phi_lookup.o .core_blast_parameters.o .core_blast_posit.o .core_blast_program.o .core_blast_query_info.o .core_blast_tune.o .core_blast_sw.o .core_blast_dynarray.o .core_split_query.o .core_gencode_singleton.o .core_index_ungapped.o .core_blast_traceback_mt_priv.o .core_blast_hspstream_mt_utils.o .core_boost_erf.o .core_jumper.o .core_hspfilter_mapper.o .core_spliced_hits.o blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxblast.a /bin/ln -f .xblast.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xblast.dep rm .core_phi_gapalign.c .core_blast_dynarray.c .core_boost_erf.c .core_blast_itree.c .core_blast_seqsrc.c .core_blast_engine.c .core_ncbi_math.c .core_index_ungapped.c .core_blast_filter.c .core_lookup_wrap.c .core_hspfilter_besthit.c .core_gencode_singleton.c .core_gapinfo.c .core_blast_psi.c .core_spliced_hits.c .core_blast_hspstream_mt_utils.c .core_blast_lookup.c .core_blast_diagnostics.c .core_blast_hspstream.c .core_blast_nascan.c .core_na_ungapped.c .core_phi_extend.c .core_blast_nalookup.c .core_blast_aalookup.c .core_blast_psi_priv.c .core_blast_encoding.c .core_jumper.c .core_blast_util.c .core_blast_posit.c .core_hspfilter_mapper.c .core_hspfilter_culling.c .core_ncbi_std.c .core_blast_program.c .core_blast_traceback.c .core_blast_stat.c .core_blast_setup.c .core_link_hsps.c .core_greedy_align.c .core_lookup_util.c .core_pattern.c .core_blast_hits.c .core_blast_kappa.c .core_blast_message.c .core_blast_parameters.c .core_matrix_freq_ratios.c .core_hspfilter_collector.c .core_aa_ungapped.c .core_blast_traceback_mt_priv.c .core_blast_aascan.c .core_phi_lookup.c .core_blast_gapalign.c .core_blast_query_info.c .core_blast_seg.c .core_split_query.c .core_blast_sw.c .core_blast_options.c .core_blast_extend.c .core_blast_tune.c @@ -71552,7 +71588,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -DNCBI_MODULE=BLASTFORMAT -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/algo/blast/format/blast_async_format.cpp -o blast_async_format.o /bin/rm -f libxblastformat.a .libxblastformat.a.stamp ar cr libxblastformat.a blastfmtutil.o blastxml_format.o blastxml2_format.o blast_format.o data4xmlformat.o data4xml2format.o build_archive.o vecscreen_run.o sam.o blast_async_format.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblastformat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxblastformat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxblastformat.a /bin/ln -f .xblastformat.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xblastformat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/format' @@ -73466,7 +73502,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/cgi/user_agent.cpp -o user_agent.o /bin/rm -f libxcgi.a .libxcgi.a.stamp ar cr libxcgi.a ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxcgi.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxcgi.a /bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xcgi.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/cgi' @@ -74466,7 +74502,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o /bin/rm -f libxcleanup.a .libxcleanup.a.stamp ar cr libxcleanup.a autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_author.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxcleanup.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxcleanup.a /bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xcleanup.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/cleanup' @@ -79094,7 +79130,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o /bin/rm -f libxconnserv.a .libxconnserv.a.stamp ar cr libxconnserv.a grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netschedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxconnserv.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxconnserv.a /bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xconnserv.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/services' @@ -82830,7 +82866,7 @@ /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o /bin/rm -f libxformat.a .libxformat.a.stamp ar cr libxformat.a accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxformat.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxformat.a /bin/ln -f .xformat.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xformat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/format' @@ -83621,7 +83657,7 @@ o writer_htmlenc.o /bin/rm -f libxhtml.a .libxhtml.a.stamp ar cr libxhtml.a node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxhtml.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxhtml.a /bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xhtml.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/html' @@ -83780,7 +83816,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/logging/listener.cpp -o listener.o /bin/rm -f libxlogging.a .libxlogging.a.stamp ar cr libxlogging.a message.o listener.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxlogging.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxlogging.a /bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xlogging.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/logging' @@ -84011,7 +84047,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/blast/names.cpp -o names.o /bin/rm -f libxnetblast.a .libxnetblast.a.stamp ar cr libxnetblast.a blast__.o blast___.o names.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxnetblast.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxnetblast.a /bin/ln -f .xnetblast.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xnetblast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blast' @@ -84176,7 +84212,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o /bin/rm -f libxnetblastcli.a .libxnetblastcli.a.stamp ar cr libxnetblastcli.a blastclient.o blastclient_.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxnetblastcli.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxnetblastcli.a /bin/ln -f .xnetblastcli.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xnetblastcli.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blast' @@ -87123,7 +87159,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/edit/huge_asn_loader.cpp -o huge_asn_loader.o /bin/rm -f libxobjedit.a .libxobjedit.a.stamp ar cr libxobjedit.a gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o mla_updater.o eutils_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o huge_asn_reader.o huge_file.o huge_file_process.o huge_asn_loader.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxobjedit.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxobjedit.a /bin/ln -f .xobjedit.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xobjedit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit' @@ -92953,7 +92989,7 @@ rong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objtools/readers/line_error.cpp -o line_error.o /bin/rm -f libxobjread.a .libxobjread.a.stamp ar cr libxobjread.a reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxobjread.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxobjread.a /bin/ln -f .xobjread.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xobjread.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers' @@ -94751,7 +94787,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.a .libxobjutil.a.stamp ar cr libxobjutil.a weight.o sequence.o feature.o indexer.o seqtitle.o create_defline.o obj_sniff.o seq_loc_util.o seq_align_util.o seq_trimmer.o bioseqgaps_ci.o objutil.o feature_edit.o autodef.o autodef_feature_clause_base.o autodef_source_desc.o autodef_available_modifier.o autodef_mod_combo.o autodef_source_group.o autodef_feature_clause.o autodef_options.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxobjutil.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxobjutil.a /bin/ln -f .xobjutil.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xobjutil.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/util' @@ -95248,7 +95284,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/qparse/parse_utils.cpp -o parse_utils.o /bin/rm -f libxqueryparse.a .libxqueryparse.a.stamp ar cr libxqueryparse.a query_parse.o parser.o query_tree_print.o query_exec.o parse_utils.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxqueryparse.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxqueryparse.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxqueryparse.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxqueryparse.a /bin/ln -f .xqueryparse.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xqueryparse.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/qparse' @@ -95566,7 +95602,7 @@ /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/connect/connection_pool.cpp -o connection_pool.o /bin/rm -f libxthrserv.a .libxthrserv.a.stamp ar cr libxthrserv.a threaded_server.o server.o server_monitor.o connection_pool.o -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxthrserv.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib /bin/ln -f libxthrserv.a /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib/libxthrserv.a /bin/ln -f .xthrserv.dep /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/status/.xthrserv.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect' @@ -95576,17 +95612,17 @@ make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/Makefile.edit_imgt_file builddir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast all make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/edit_imgt_file.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/edit_imgt_file.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/edit_imgt_file.pl /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/edit_imgt_file.pl make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/Makefile.makeogrdb builddir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast all make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/makeogrdb.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/makeogrdb.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/makeogrdb.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/makeogrdb.py make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' /usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/Makefile.makeogrannote builddir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast all make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/makeogrannote.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/makeogrannote.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/makeogrannote.py /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/makeogrannote.py make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' @@ -95790,7 +95826,7 @@ Updating dependency information for /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/igblastn_app.cpp. /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -DNCBI_APP_BUILT_AS=igblastn /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/igblastn_app.cpp -o igblastn_app.o /usr/bin/g++ -std=gnu++17 -Wl,-rpath,//usr/lib -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 igblastn_app.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lblast_app_util -ligblast -lblast_sra_input-static -lsraread-static -lblastinput-static -lxalgoalignutil-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxqueryparse-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -llmdb-static -lxregexp-static -lregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -L//usr/lib -lncbi-vdb -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lbz2 -lz -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lpthread -lm -lpthread -o igblastn -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f igblastn /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f igblastn /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f igblastn /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/igblastn make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' @@ -95996,7 +96032,7 @@ Updating dependency information for /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/igblastp_app.cpp. /usr/bin/g++ -std=gnu++17 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-igblast-1.20.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -D_DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/inc -I/build/reproducible-path/ncbi-igblast-1.20.0/c++/include -DNCBI_APP_BUILT_AS=igblastp /build/reproducible-path/ncbi-igblast-1.20.0/c++/src/app/igblast/igblastp_app.cpp -o igblastp_app.o /usr/bin/g++ -std=gnu++17 -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -Wl,-z,relro -gdwarf-3 -O2 igblastp_app.o -L/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/lib -lblast_app_util -ligblast -lxalgoalignutil-static -lblastinput-static -lncbi_xloader_blastdb_rmt-static -lncbi_xloader_blastdb-static -lxblastformat-static -lalign_format-static -ltaxon1-static -lblastdb_format-static -lgene_info-static -lxformat-static -lxcleanup-static -lgbseq-static -lxobjedit-static -lefetch-static -leutils-static -legquery-static -lelink-static -lepost-static -lesearch-static -lespell-static -lesummary-static -leinfo-static -luilist-static -lehistory-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -ltaxon3-static -lmlacli-static -lmla-static -lmedlars-static -lpubmed-static -lmedline-static -lbiblio-static -lgeneral-static -lvalid-static -lxalnmgr-static -lblastxml-static -lblastxml2-static -lxcgi-static -lxhtml-static -lxqueryparse-static -lproteinkmer-static -lxblast-static -lutrtprof-static -lxalgoblastdbindex-static -lcomposition_adjustment-static -lxalgodustmask-static -lxalgowinmask-static -lseqmasks_io-static -lseqdb-static -lblast_services-static -lxalnmgr-static -lxobjutil-static -lxobjread-static -lvariation-static -lsubmit-static -lxlogging-static -lxnetblastcli-static -lxnetblast-static -lblastdb-static -lscoremat-static -ltables-static -llmdb-static -lxregexp-static -lregexp-static -lncbi_xloader_genbank-static -lncbi_xreader_id1-static -lncbi_xreader_id2-static -lncbi_xreader_cache-static -ldbapi_driver-static -lncbi_xreader-static -lxconnect-static -lid1-static -lid2-static -lxobjmgr-static -lgenome_collection-static -lseqedit-static -lseqsplit-static -lsubmit-static -lseqset-static -lseq-static -lseqcode-static -lsequtil-static -lpub-static -lmedline-static -lbiblio-static -lgeneral-static -lxser-static -lxutil-static -lxncbi-static -lxcompress-static -lz -lbz2 -lzstd -lmbedtls -lmbedx509 -lmbedcrypto -lz -lresolv -lpthread -lm -lpthread -o igblastp -/bin/bash /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f igblastp /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin +/bin/sh /build/reproducible-path/ncbi-igblast-1.20.0/c++/scripts/common/impl/if_diff.sh /bin/ln -f igblastp /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin /bin/ln -f igblastp /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/bin/igblastp make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' @@ -96008,33 +96044,33 @@ cd c\+\+ && make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++' if test -s ""; then \ - cd /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build && make -j12 --jobserver-auth=fifo:/tmp/GMfifo2959143 check_p RUN_CHECK=Y; \ + cd /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build && make -j12 --jobserver-auth=fifo:/tmp/GMfifo1608216 check_p RUN_CHECK=Y; \ else \ - cd /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build && make -j12 --jobserver-auth=fifo:/tmp/GMfifo2959143 check_r RUN_CHECK=Y; \ + cd /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build && make -j12 --jobserver-auth=fifo:/tmp/GMfifo1608216 check_r RUN_CHECK=Y; \ fi make[2]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build' make[2]: warning: -j12 forced in submake: resetting jobserver mode. ====================================================================== make[3]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build' make[3]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C corelib -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C corelib -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/corelib' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2959205 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608239 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/corelib/test' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/corelib/test' -/usr/bin/make -C jaeger -j12 --jobserver-auth=fifo:/tmp/GMfifo2959205 check_add_r || exit 5 +/usr/bin/make -C jaeger -j12 --jobserver-auth=fifo:/tmp/GMfifo1608239 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/corelib/jaeger' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/corelib/jaeger' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/corelib' -/usr/bin/make -C util -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C util -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C regexp -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C regexp -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/regexp' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/regexp' @@ -96042,15 +96078,15 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/regexp' SKIP -- util/regexp/test_pcre make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/regexp' -/usr/bin/make -C xregexp -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C xregexp -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/xregexp' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/xregexp' -/usr/bin/make -C compress -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C compress -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C bzip2 -j12 --jobserver-auth=fifo:/tmp/GMfifo2959273 check_add_r || exit 5 +/usr/bin/make -C bzip2 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608277 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/bzip2' make[6]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: @@ -96063,13 +96099,13 @@ make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/bzip2' make[8]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/bzip2' -/usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/compress/bzip2 TMPL=bzip2 -j12 --jobserver-auth=fifo:/tmp/GMfifo2959287 mark-as-disabled +/usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/compress/bzip2 TMPL=bzip2 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608286 mark-as-disabled make[8]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/bzip2' make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/bzip2' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/bzip2' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/bzip2' -/usr/bin/make -C zlib -j12 --jobserver-auth=fifo:/tmp/GMfifo2959273 check_add_r || exit 5 +/usr/bin/make -C zlib -j12 --jobserver-auth=fifo:/tmp/GMfifo1608277 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/zlib' make[6]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: @@ -96082,43 +96118,43 @@ make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/zlib' make[8]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/zlib' -/usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/compress/zlib TMPL=zlib -j12 --jobserver-auth=fifo:/tmp/GMfifo2959346 mark-as-disabled +/usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/util/compress/zlib TMPL=zlib -j12 --jobserver-auth=fifo:/tmp/GMfifo1608317 mark-as-disabled make[8]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/zlib' make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/zlib' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/zlib' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/zlib' -/usr/bin/make -C api -j12 --jobserver-auth=fifo:/tmp/GMfifo2959273 check_add_r || exit 5 +/usr/bin/make -C api -j12 --jobserver-auth=fifo:/tmp/GMfifo1608277 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/api' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/compress' -/usr/bin/make -C diff -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C diff -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/diff' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/diff' -/usr/bin/make -C image -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C image -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/image' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/image' -/usr/bin/make -C tables -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C tables -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/tables' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2959431 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608358 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/tables/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/tables/test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/tables' -/usr/bin/make -C sequtil -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C sequtil -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/sequtil' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/sequtil' -/usr/bin/make -C bitset -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C bitset -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/bitset' make[5]: warning: -j12 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' @@ -96126,12 +96162,12 @@ /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/bitset' -/usr/bin/make -C qparse -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C qparse -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/qparse' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/qparse' -/usr/bin/make -C lmdb -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C lmdb -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdb' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdb' @@ -96155,7 +96191,7 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdb' TEST -- util/lmdb/lmdb_test5 make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdb' -/usr/bin/make -C lmdbxx -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C lmdbxx -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdbxx' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdbxx' @@ -96163,77 +96199,77 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdbxx' SKIP -- util/lmdbxx/lmdbxx_sample make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/lmdbxx' -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/test' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/test' -/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/demo' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/demo' -/usr/bin/make -C profile -j12 --jobserver-auth=fifo:/tmp/GMfifo2959224 check_add_r || exit 5 +/usr/bin/make -C profile -j12 --jobserver-auth=fifo:/tmp/GMfifo1608252 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/profile' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util/profile' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/util' -/usr/bin/make -C connect -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C connect -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C services -j12 --jobserver-auth=fifo:/tmp/GMfifo2959956 check_add_r || exit 5 +/usr/bin/make -C services -j12 --jobserver-auth=fifo:/tmp/GMfifo1608643 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/services' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2959970 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608647 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/services/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/services/test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/services' -/usr/bin/make -C ext -j12 --jobserver-auth=fifo:/tmp/GMfifo2959956 check_add_r || exit 5 +/usr/bin/make -C ext -j12 --jobserver-auth=fifo:/tmp/GMfifo1608643 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/ext' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/ext' -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2959956 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608643 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/test' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/test' -/usr/bin/make -C daemons -j12 --jobserver-auth=fifo:/tmp/GMfifo2959956 check_add_r || exit 5 +/usr/bin/make -C daemons -j12 --jobserver-auth=fifo:/tmp/GMfifo1608643 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/daemons' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect/daemons' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/connect' -/usr/bin/make -C cgi -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C cgi -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/cgi' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960034 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608671 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/cgi/test' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/cgi/test' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/cgi' -/usr/bin/make -C html -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C html -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/html' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960056 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608679 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/html/test' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/html/test' -/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo2960056 check_add_r || exit 5 +/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo1608679 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/html/demo' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/html/demo' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/html' -/usr/bin/make -C build-system -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C build-system -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C helpers -j12 --jobserver-auth=fifo:/tmp/GMfifo2960093 check_add_r || exit 5 +/usr/bin/make -C helpers -j12 --jobserver-auth=fifo:/tmp/GMfifo1608694 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/helpers' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/helpers' @@ -96241,14 +96277,14 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/helpers' -/usr/bin/make -C project_tree_builder -j12 --jobserver-auth=fifo:/tmp/GMfifo2960093 check_add_r || exit 5 +/usr/bin/make -C project_tree_builder -j12 --jobserver-auth=fifo:/tmp/GMfifo1608694 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder -/usr/bin/make -C msbuild -j12 --jobserver-auth=fifo:/tmp/GMfifo2960166 check_add_r || exit 5 +/usr/bin/make -C msbuild -j12 --jobserver-auth=fifo:/tmp/GMfifo1608714 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder/msbuild' make[6]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: @@ -96261,7 +96297,7 @@ make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder/msbuild' make[8]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder/msbuild' -/usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j12 --jobserver-auth=fifo:/tmp/GMfifo2960235 mark-as-disabled +/usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -j12 --jobserver-auth=fifo:/tmp/GMfifo1608737 mark-as-disabled make[8]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder/msbuild' @@ -96269,10 +96305,10 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder/msbuild' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system/project_tree_builder' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/build-system' -/usr/bin/make -C serial -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C serial -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C datatool -j12 --jobserver-auth=fifo:/tmp/GMfifo2960309 check_add_r || exit 5 +/usr/bin/make -C datatool -j12 --jobserver-auth=fifo:/tmp/GMfifo1608762 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/datatool' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/datatool' @@ -96280,26 +96316,26 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/datatool' TEST -- serial/datatool/datatool make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/datatool' -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960309 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608762 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/test' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/test' -/usr/bin/make -C soap -j12 --jobserver-auth=fifo:/tmp/GMfifo2960309 check_add_r || exit 5 +/usr/bin/make -C soap -j12 --jobserver-auth=fifo:/tmp/GMfifo1608762 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/soap' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/soap' -/usr/bin/make -C grpc_integration -j12 --jobserver-auth=fifo:/tmp/GMfifo2960309 check_add_r || exit 5 +/usr/bin/make -C grpc_integration -j12 --jobserver-auth=fifo:/tmp/GMfifo1608762 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/grpc_integration' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial/grpc_integration' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/serial' -/usr/bin/make -C db -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C db -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/db' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C sqlite -j12 --jobserver-auth=fifo:/tmp/GMfifo2960449 check_add_r || exit 5 +/usr/bin/make -C sqlite -j12 --jobserver-auth=fifo:/tmp/GMfifo1608837 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/db/sqlite' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. @@ -96307,38 +96343,38 @@ /bin/echo 'Warning: non-existent sub-project "bdb"' Warning: non-existent sub-project "bdb" make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/db' -/usr/bin/make -C dbapi -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C dbapi -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C driver -j12 --jobserver-auth=fifo:/tmp/GMfifo2960460 check_add_r || exit 5 +/usr/bin/make -C driver -j12 --jobserver-auth=fifo:/tmp/GMfifo1608846 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C util -j12 --jobserver-auth=fifo:/tmp/GMfifo2960469 check_add_r || exit 5 +/usr/bin/make -C util -j12 --jobserver-auth=fifo:/tmp/GMfifo1608850 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/util' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/util' -/usr/bin/make -C ctlib -j12 --jobserver-auth=fifo:/tmp/GMfifo2960469 check_add_r || exit 5 +/usr/bin/make -C ctlib -j12 --jobserver-auth=fifo:/tmp/GMfifo1608850 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/ctlib' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/ctlib' -/usr/bin/make -C ftds100 -j12 --jobserver-auth=fifo:/tmp/GMfifo2960469 check_add_r || exit 5 +/usr/bin/make -C ftds100 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608850 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/ftds100' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/ftds100' -/usr/bin/make -C ftds-default -j12 --jobserver-auth=fifo:/tmp/GMfifo2960469 check_add_r || exit 5 +/usr/bin/make -C ftds-default -j12 --jobserver-auth=fifo:/tmp/GMfifo1608850 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/ftds-default' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/ftds-default' -/usr/bin/make -C mysql -j12 --jobserver-auth=fifo:/tmp/GMfifo2960469 check_add_r || exit 5 +/usr/bin/make -C mysql -j12 --jobserver-auth=fifo:/tmp/GMfifo1608850 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/mysql' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/mysql' -/usr/bin/make -C odbc -j12 --jobserver-auth=fifo:/tmp/GMfifo2960469 check_add_r || exit 5 +/usr/bin/make -C odbc -j12 --jobserver-auth=fifo:/tmp/GMfifo1608850 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/odbc' make[6]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project odbc due to unmet requirements: @@ -96351,7 +96387,7 @@ make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/odbc' make[8]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/odbc' -/usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j12 --jobserver-auth=fifo:/tmp/GMfifo2960553 mark-as-disabled +/usr/bin/make -f /build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-igblast-1.20.0/c++/src/dbapi/driver/odbc TMPL=ncbi_xdbapi_odbc -j12 --jobserver-auth=fifo:/tmp/GMfifo1608888 mark-as-disabled make[8]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/odbc' make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/odbc' @@ -96359,7 +96395,7 @@ Warning: non-existent sub-project "samples" make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/odbc' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/odbc' -/usr/bin/make -C samples -j12 --jobserver-auth=fifo:/tmp/GMfifo2960469 check_add_r || exit 5 +/usr/bin/make -C samples -j12 --jobserver-auth=fifo:/tmp/GMfifo1608850 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi/driver/samples' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. @@ -96372,272 +96408,272 @@ /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/dbapi' -/usr/bin/make -C objects -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C objects -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C general -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C general -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/general' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960660 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608967 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/general/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/general/test' -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960660 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608967 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/general/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/general/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/general' -/usr/bin/make -C biblio -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C biblio -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/biblio' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/biblio' -/usr/bin/make -C medline -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C medline -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/medline' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/medline' -/usr/bin/make -C pub -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C pub -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pub' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pub' -/usr/bin/make -C seqcode -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C seqcode -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqcode' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqcode' -/usr/bin/make -C seq -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C seq -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seq' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960728 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608999 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seq/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seq/test' -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960728 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1608999 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seq/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seq/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seq' -/usr/bin/make -C seqset -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C seqset -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqset' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960769 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609013 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqset/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqset/test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqset' -/usr/bin/make -C submit -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C submit -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/submit' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/submit' -/usr/bin/make -C seqedit -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C seqedit -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqedit' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqedit' -/usr/bin/make -C seqsplit -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C seqsplit -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqsplit' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqsplit' -/usr/bin/make -C id1 -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C id1 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/id1' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2960822 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609044 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/id1/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/id1/test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/id1' -/usr/bin/make -C id2 -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C id2 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/id2' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/id2' -/usr/bin/make -C entrez2 -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C entrez2 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/entrez2' make[5]: warning: -j12 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/entrez2' -/usr/bin/make -C pubmed -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C pubmed -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pubmed' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pubmed' -/usr/bin/make -C medlars -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C medlars -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/medlars' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/medlars' -/usr/bin/make -C mla -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C mla -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/mla' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/mla' -/usr/bin/make -C proj -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C proj -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/proj' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/proj' -/usr/bin/make -C scoremat -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C scoremat -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/scoremat' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/scoremat' -/usr/bin/make -C blast -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C blast -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blast' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blast' -/usr/bin/make -C blastdb -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C blastdb -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastdb' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastdb' -/usr/bin/make -C blastxml -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C blastxml -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastxml' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastxml' -/usr/bin/make -C blastxml2 -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C blastxml2 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastxml2' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/blastxml2' -/usr/bin/make -C mmdb -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C mmdb -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/mmdb' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/mmdb' -/usr/bin/make -C cn3d -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C cn3d -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/cn3d' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/cn3d' -/usr/bin/make -C cdd -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C cdd -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/cdd' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/cdd' -/usr/bin/make -C ncbimime -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C ncbimime -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/ncbimime' make[5]: warning: -j12 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/ncbimime' -/usr/bin/make -C pcsubstance -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C pcsubstance -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pcsubstance' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pcsubstance' -/usr/bin/make -C pcassay -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C pcassay -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pcassay' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pcassay' -/usr/bin/make -C pcassay2 -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C pcassay2 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pcassay2' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/pcassay2' -/usr/bin/make -C gbseq -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C gbseq -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/gbseq' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/gbseq' -/usr/bin/make -C insdseq -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C insdseq -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/insdseq' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/insdseq' -/usr/bin/make -C tinyseq -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C tinyseq -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/tinyseq' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/tinyseq' -/usr/bin/make -C biotree -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C biotree -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/biotree' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/biotree' -/usr/bin/make -C entrezgene -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C entrezgene -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/entrezgene' make[5]: warning: -j12 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/entrezgene' -/usr/bin/make -C omssa -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C omssa -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/omssa' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/omssa' -/usr/bin/make -C remap -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C remap -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/remap' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/remap' -/usr/bin/make -C seqtest -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C seqtest -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqtest' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/seqtest' -/usr/bin/make -C taxon1 -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C taxon1 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/taxon1' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/taxon1' -/usr/bin/make -C taxon3 -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C taxon3 -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/taxon3' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/taxon3' -/usr/bin/make -C gbproj -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C gbproj -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/gbproj' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/gbproj' -/usr/bin/make -C trackmgr -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C trackmgr -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/trackmgr' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/trackmgr' -/usr/bin/make -C valerr -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C valerr -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/valerr' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/valerr' -/usr/bin/make -C valid -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C valid -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/valid' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/valid' -/usr/bin/make -C access -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C access -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/access' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/access' -/usr/bin/make -C docsum -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C docsum -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/docsum' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/docsum' -/usr/bin/make -C featdef -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C featdef -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/featdef' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/featdef' -/usr/bin/make -C genomecoll -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C genomecoll -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/genomecoll' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C gc_cli -j12 --jobserver-auth=fifo:/tmp/GMfifo2961311 check_add_r || exit 5 +/usr/bin/make -C gc_cli -j12 --jobserver-auth=fifo:/tmp/GMfifo1609250 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/genomecoll/gc_cli' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/genomecoll/gc_cli' @@ -96646,69 +96682,69 @@ SKIP -- objects/genomecoll/gc_cli/gc_cli (unmet build REQUIRES) make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/genomecoll/gc_cli' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/genomecoll' -/usr/bin/make -C homologene -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C homologene -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/homologene' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/homologene' -/usr/bin/make -C mim -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C mim -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/mim' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/mim' -/usr/bin/make -C objprt -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C objprt -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/objprt' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/objprt' -/usr/bin/make -C variation -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C variation -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation' -/usr/bin/make -C macro -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C macro -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/macro' make[5]: warning: -j12 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/macro' -/usr/bin/make -C genesbyloc -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C genesbyloc -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/genesbyloc' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/genesbyloc' -/usr/bin/make -C coords -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C coords -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/coords' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/coords' -/usr/bin/make -C varrep -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C varrep -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/varrep' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/varrep' -/usr/bin/make -C variation_libs -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C variation_libs -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation_libs' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C dbsnp -j12 --jobserver-auth=fifo:/tmp/GMfifo2961423 check_add_r || exit 5 +/usr/bin/make -C dbsnp -j12 --jobserver-auth=fifo:/tmp/GMfifo1609297 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation_libs/dbsnp' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C search_by_rsid -j12 --jobserver-auth=fifo:/tmp/GMfifo2961433 check_add_r || exit 5 +/usr/bin/make -C search_by_rsid -j12 --jobserver-auth=fifo:/tmp/GMfifo1609301 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation_libs/dbsnp/search_by_rsid' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation_libs/dbsnp/search_by_rsid' -/usr/bin/make -C tooltip_service -j12 --jobserver-auth=fifo:/tmp/GMfifo2961433 check_add_r || exit 5 +/usr/bin/make -C tooltip_service -j12 --jobserver-auth=fifo:/tmp/GMfifo1609301 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation_libs/dbsnp/tooltip_service' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation_libs/dbsnp/tooltip_service' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation_libs/dbsnp' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/variation_libs' -/usr/bin/make -C dbsnp -j12 --jobserver-auth=fifo:/tmp/GMfifo2960651 check_add_r || exit 5 +/usr/bin/make -C dbsnp -j12 --jobserver-auth=fifo:/tmp/GMfifo1608957 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/dbsnp' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C primary_track -j12 --jobserver-auth=fifo:/tmp/GMfifo2961477 check_add_r || exit 5 +/usr/bin/make -C primary_track -j12 --jobserver-auth=fifo:/tmp/GMfifo1609313 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/dbsnp/primary_track' make[6]: warning: -j12 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' @@ -96716,65 +96752,65 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/dbsnp/primary_track' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects/dbsnp' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objects' -/usr/bin/make -C objmgr -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C objmgr -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2961504 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609331 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/test' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/test' -/usr/bin/make -C util -j12 --jobserver-auth=fifo:/tmp/GMfifo2961504 check_add_r || exit 5 +/usr/bin/make -C util -j12 --jobserver-auth=fifo:/tmp/GMfifo1609331 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/util' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2961533 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609350 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/util/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/util/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/util' -/usr/bin/make -C split -j12 --jobserver-auth=fifo:/tmp/GMfifo2961504 check_add_r || exit 5 +/usr/bin/make -C split -j12 --jobserver-auth=fifo:/tmp/GMfifo1609331 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/split' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr/split' make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objmgr' -/usr/bin/make -C objtools -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C objtools -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C logging -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C logging -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/logging' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/logging' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" -/usr/bin/make -C readers -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C readers -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C app -j12 --jobserver-auth=fifo:/tmp/GMfifo2961612 check_add_r || exit 5 +/usr/bin/make -C app -j12 --jobserver-auth=fifo:/tmp/GMfifo1609399 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers/app' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers/app' -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2961612 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609399 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers/test' -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2961612 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609399 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/readers' -/usr/bin/make -C blast -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C blast -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C seqdb_reader -j12 --jobserver-auth=fifo:/tmp/GMfifo2961677 check_add_r || exit 5 +/usr/bin/make -C seqdb_reader -j12 --jobserver-auth=fifo:/tmp/GMfifo1609416 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo2961690 check_add_r || exit 5 +/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo1609420 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader/demo' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader/demo' @@ -96782,7 +96818,7 @@ make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2961690 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609420 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader/test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader/test' @@ -96791,10 +96827,10 @@ TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader/test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_reader' -/usr/bin/make -C seqdb_writer -j12 --jobserver-auth=fifo:/tmp/GMfifo2961677 check_add_r || exit 5 +/usr/bin/make -C seqdb_writer -j12 --jobserver-auth=fifo:/tmp/GMfifo1609416 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_writer' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2961965 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609547 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_writer/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: @@ -96805,10 +96841,10 @@ make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_writer/unit_test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/seqdb_writer' -/usr/bin/make -C gene_info_reader -j12 --jobserver-auth=fifo:/tmp/GMfifo2961677 check_add_r || exit 5 +/usr/bin/make -C gene_info_reader -j12 --jobserver-auth=fifo:/tmp/GMfifo1609416 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/gene_info_reader' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo2962009 check_add_r || exit 5 +/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo1609560 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/gene_info_reader/demo' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/gene_info_reader/demo' @@ -96816,7 +96852,7 @@ make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962009 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609560 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/gene_info_reader/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: @@ -96829,10 +96865,10 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" -/usr/bin/make -C services -j12 --jobserver-auth=fifo:/tmp/GMfifo2961677 check_add_r || exit 5 +/usr/bin/make -C services -j12 --jobserver-auth=fifo:/tmp/GMfifo1609416 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/services' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962078 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609591 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/services/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: @@ -96843,10 +96879,10 @@ make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/services/unit_test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/services' -/usr/bin/make -C blastdb_format -j12 --jobserver-auth=fifo:/tmp/GMfifo2961677 check_add_r || exit 5 +/usr/bin/make -C blastdb_format -j12 --jobserver-auth=fifo:/tmp/GMfifo1609416 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/blastdb_format' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962131 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609604 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast/blastdb_format/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: @@ -96860,18 +96896,18 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C pubseq_gateway -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C pubseq_gateway -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C diag -j12 --jobserver-auth=fifo:/tmp/GMfifo2962166 check_add_r || exit 5 +/usr/bin/make -C diag -j12 --jobserver-auth=fifo:/tmp/GMfifo1609619 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/diag' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/diag' -/usr/bin/make -C cassandra -j12 --jobserver-auth=fifo:/tmp/GMfifo2962166 check_add_r || exit 5 +/usr/bin/make -C cassandra -j12 --jobserver-auth=fifo:/tmp/GMfifo1609619 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cassandra' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962191 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609627 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cassandra/test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cassandra/test' @@ -96880,10 +96916,10 @@ SKIP -- objtools/pubseq_gateway/cassandra/test/psg_cassandra_test (unmet build REQUIRES) make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cassandra/test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cassandra' -/usr/bin/make -C client -j12 --jobserver-auth=fifo:/tmp/GMfifo2962166 check_add_r || exit 5 +/usr/bin/make -C client -j12 --jobserver-auth=fifo:/tmp/GMfifo1609619 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/client' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962230 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609639 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/client/test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/client/test' @@ -96892,7 +96928,7 @@ SKIP -- objtools/pubseq_gateway/client/test/test_psg_client_impl (unmet build REQUIRES) make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/client/test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/client' -/usr/bin/make -C protobuf -j12 --jobserver-auth=fifo:/tmp/GMfifo2962166 check_add_r || exit 5 +/usr/bin/make -C protobuf -j12 --jobserver-auth=fifo:/tmp/GMfifo1609619 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/protobuf' make[6]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project protobuf due to unmet requirements: @@ -96912,10 +96948,10 @@ make[8]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/protobuf' make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/protobuf' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/protobuf' -/usr/bin/make -C cache -j12 --jobserver-auth=fifo:/tmp/GMfifo2962166 check_add_r || exit 5 +/usr/bin/make -C cache -j12 --jobserver-auth=fifo:/tmp/GMfifo1609619 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cache' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962319 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609665 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cache/test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cache/test' @@ -96929,43 +96965,43 @@ make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cache/test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway/cache' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/pubseq_gateway' -/usr/bin/make -C data_loaders -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C data_loaders -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C genbank -j12 --jobserver-auth=fifo:/tmp/GMfifo2962378 check_add_r || exit 5 +/usr/bin/make -C genbank -j12 --jobserver-auth=fifo:/tmp/GMfifo1609683 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C cache -j12 --jobserver-auth=fifo:/tmp/GMfifo2962393 check_add_r || exit 5 +/usr/bin/make -C cache -j12 --jobserver-auth=fifo:/tmp/GMfifo1609687 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/cache' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/cache' -/usr/bin/make -C pubseq -j12 --jobserver-auth=fifo:/tmp/GMfifo2962393 check_add_r || exit 5 +/usr/bin/make -C pubseq -j12 --jobserver-auth=fifo:/tmp/GMfifo1609687 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/pubseq' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/pubseq' -/usr/bin/make -C id2 -j12 --jobserver-auth=fifo:/tmp/GMfifo2962393 check_add_r || exit 5 +/usr/bin/make -C id2 -j12 --jobserver-auth=fifo:/tmp/GMfifo1609687 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/id2' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/id2' -/usr/bin/make -C id1 -j12 --jobserver-auth=fifo:/tmp/GMfifo2962393 check_add_r || exit 5 +/usr/bin/make -C id1 -j12 --jobserver-auth=fifo:/tmp/GMfifo1609687 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/id1' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/id1' -/usr/bin/make -C pubseq2 -j12 --jobserver-auth=fifo:/tmp/GMfifo2962393 check_add_r || exit 5 +/usr/bin/make -C pubseq2 -j12 --jobserver-auth=fifo:/tmp/GMfifo1609687 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/pubseq2' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/pubseq2' -/usr/bin/make -C gicache -j12 --jobserver-auth=fifo:/tmp/GMfifo2962393 check_add_r || exit 5 +/usr/bin/make -C gicache -j12 --jobserver-auth=fifo:/tmp/GMfifo1609687 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/gicache' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/gicache' -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962393 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609687 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank/test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. @@ -96973,10 +97009,10 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C blastdb -j12 --jobserver-auth=fifo:/tmp/GMfifo2962378 check_add_r || exit 5 +/usr/bin/make -C blastdb -j12 --jobserver-auth=fifo:/tmp/GMfifo1609683 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/blastdb' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962496 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609722 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders/blastdb/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. @@ -96989,20 +97025,20 @@ /bin/echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/data_loaders' -/usr/bin/make -C simple -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C simple -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/simple' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/simple' -/usr/bin/make -C alnmgr -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C alnmgr -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/alnmgr' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo2962535 check_add_r || exit 5 +/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo1609737 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/alnmgr/demo' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/alnmgr/demo' -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962535 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609737 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/alnmgr/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. @@ -97014,63 +97050,63 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" -/usr/bin/make -C eutils -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C eutils -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C egquery -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C egquery -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/egquery' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/egquery' -/usr/bin/make -C elink -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C elink -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/elink' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/elink' -/usr/bin/make -C epost -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C epost -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/epost' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/epost' -/usr/bin/make -C esearch -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C esearch -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/esearch' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/esearch' -/usr/bin/make -C espell -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C espell -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/espell' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/espell' -/usr/bin/make -C esummary -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C esummary -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/esummary' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/esummary' -/usr/bin/make -C linkout -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C linkout -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/linkout' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/linkout' -/usr/bin/make -C einfo -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C einfo -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/einfo' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/einfo' -/usr/bin/make -C uilist -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C uilist -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/uilist' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/uilist' -/usr/bin/make -C ehistory -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C ehistory -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/ehistory' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/ehistory' -/usr/bin/make -C efetch -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C efetch -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/efetch' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962714 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609798 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/efetch/test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/efetch/test' @@ -97079,41 +97115,41 @@ TEST -- objtools/eutils/efetch/test/test_pubmed_article make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/efetch/test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/efetch' -/usr/bin/make -C api -j12 --jobserver-auth=fifo:/tmp/GMfifo2962583 check_add_r || exit 5 +/usr/bin/make -C api -j12 --jobserver-auth=fifo:/tmp/GMfifo1609753 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/api' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/eutils' -/usr/bin/make -C edit -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C edit -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962865 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609891 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit/unit_test' -/usr/bin/make -C pubmed_fetch -j12 --jobserver-auth=fifo:/tmp/GMfifo2962865 check_add_r || exit 5 +/usr/bin/make -C pubmed_fetch -j12 --jobserver-auth=fifo:/tmp/GMfifo1609891 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit/pubmed_fetch' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit/pubmed_fetch' -/usr/bin/make -C test_remote_updater -j12 --jobserver-auth=fifo:/tmp/GMfifo2962865 check_add_r || exit 5 +/usr/bin/make -C test_remote_updater -j12 --jobserver-auth=fifo:/tmp/GMfifo1609891 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit/test_remote_updater' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit/test_remote_updater' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/edit' -/usr/bin/make -C cleanup -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C cleanup -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/cleanup' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962896 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609907 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/cleanup/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/cleanup/test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/cleanup' -/usr/bin/make -C format -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C format -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/format' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. @@ -97124,19 +97160,19 @@ Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" -/usr/bin/make -C seqmasks_io -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C seqmasks_io -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/seqmasks_io' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962929 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609922 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/seqmasks_io/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/seqmasks_io/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/seqmasks_io' -/usr/bin/make -C align_format -j12 --jobserver-auth=fifo:/tmp/GMfifo2961580 check_add_r || exit 5 +/usr/bin/make -C align_format -j12 --jobserver-auth=fifo:/tmp/GMfifo1609380 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/align_format' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2962945 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609930 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools/align_format/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project unit_test due to unmet requirements: @@ -97162,16 +97198,16 @@ make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/objtools' /bin/echo 'Warning: non-existent sub-project "ctools"' Warning: non-existent sub-project "ctools" -/usr/bin/make -C sra -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C sra -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/sra' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C readers -j12 --jobserver-auth=fifo:/tmp/GMfifo2962977 check_add_r || exit 5 +/usr/bin/make -C readers -j12 --jobserver-auth=fifo:/tmp/GMfifo1609950 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/sra/readers' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C sra -j12 --jobserver-auth=fifo:/tmp/GMfifo2962986 check_add_r || exit 5 +/usr/bin/make -C sra -j12 --jobserver-auth=fifo:/tmp/GMfifo1609954 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/sra/readers/sra' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2963000 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1609958 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/sra/readers/sra/test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/sra/readers/sra/test' @@ -97216,50 +97252,50 @@ /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/sra' -/usr/bin/make -C algo -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C algo -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C dustmask -j12 --jobserver-auth=fifo:/tmp/GMfifo2963480 check_add_r || exit 5 +/usr/bin/make -C dustmask -j12 --jobserver-auth=fifo:/tmp/GMfifo1610265 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/dustmask' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/dustmask' -/usr/bin/make -C winmask -j12 --jobserver-auth=fifo:/tmp/GMfifo2963480 check_add_r || exit 5 +/usr/bin/make -C winmask -j12 --jobserver-auth=fifo:/tmp/GMfifo1610265 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/winmask' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/winmask' -/usr/bin/make -C sequence -j12 --jobserver-auth=fifo:/tmp/GMfifo2963480 check_add_r || exit 5 +/usr/bin/make -C sequence -j12 --jobserver-auth=fifo:/tmp/GMfifo1610265 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/sequence' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo2963522 check_add_r || exit 5 +/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo1610277 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/sequence/demo' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/sequence/demo' -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2963522 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1610277 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/sequence/unit_test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/sequence/unit_test' make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/sequence' -/usr/bin/make -C blast -j12 --jobserver-auth=fifo:/tmp/GMfifo2963480 check_add_r || exit 5 +/usr/bin/make -C blast -j12 --jobserver-auth=fifo:/tmp/GMfifo1610265 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C composition_adjustment -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C composition_adjustment -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/composition_adjustment' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/composition_adjustment' -/usr/bin/make -C core -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C core -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/core' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/core' -/usr/bin/make -C dbindex -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C dbindex -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/dbindex' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C makeindex -j12 --jobserver-auth=fifo:/tmp/GMfifo2963585 check_add_r || exit 5 +/usr/bin/make -C makeindex -j12 --jobserver-auth=fifo:/tmp/GMfifo1610301 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/dbindex/makeindex' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/dbindex/makeindex' @@ -97270,15 +97306,15 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" -/usr/bin/make -C api -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C api -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/api' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/api' -/usr/bin/make -C proteinkmer -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C proteinkmer -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/proteinkmer' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2963637 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1610326 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/proteinkmer/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/proteinkmer/unit_test' @@ -97287,29 +97323,29 @@ SKIP -- algo/blast/proteinkmer/unit_test/proteinkmer_unit_test (unmet build REQUIRES) make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/proteinkmer/unit_test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/proteinkmer' -/usr/bin/make -C format -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C format -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/format' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/format' -/usr/bin/make -C blastinput -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C blastinput -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blastinput' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2963674 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1610341 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blastinput/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blastinput/unit_test' -/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo2963674 check_add_r || exit 5 +/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo1610341 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blastinput/demo' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blastinput/demo' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blastinput' -/usr/bin/make -C blast_sra_input -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C blast_sra_input -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blast_sra_input' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2963707 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1610353 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blast_sra_input/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blast_sra_input/unit_test' @@ -97318,7 +97354,7 @@ SKIP -- algo/blast/blast_sra_input/unit_test/blastsrainput_unit_test (unmet build REQUIRES) make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blast_sra_input/unit_test' make[6]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/blast_sra_input' -/usr/bin/make -C igblast -j12 --jobserver-auth=fifo:/tmp/GMfifo2963544 check_add_r || exit 5 +/usr/bin/make -C igblast -j12 --jobserver-auth=fifo:/tmp/GMfifo1610289 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast/igblast' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. @@ -97332,18 +97368,18 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/blast' /bin/echo 'Warning: non-existent sub-project "segmask"' Warning: non-existent sub-project "segmask" -/usr/bin/make -C align -j12 --jobserver-auth=fifo:/tmp/GMfifo2963480 check_add_r || exit 5 +/usr/bin/make -C align -j12 --jobserver-auth=fifo:/tmp/GMfifo1610265 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/align' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C util -j12 --jobserver-auth=fifo:/tmp/GMfifo2963759 check_add_r || exit 5 +/usr/bin/make -C util -j12 --jobserver-auth=fifo:/tmp/GMfifo1610372 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/align/util' make[6]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo2963823 check_add_r || exit 5 +/usr/bin/make -C demo -j12 --jobserver-auth=fifo:/tmp/GMfifo1610376 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/align/util/demo' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/align/util/demo' -/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo2963823 check_add_r || exit 5 +/usr/bin/make -C unit_test -j12 --jobserver-auth=fifo:/tmp/GMfifo1610376 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo/align/util/unit_test' make[7]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. @@ -97385,15 +97421,15 @@ /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/algo' -/usr/bin/make -C misc -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C misc -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/misc' make[4]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C third_party -j12 --jobserver-auth=fifo:/tmp/GMfifo2963945 check_add_r || exit 5 +/usr/bin/make -C third_party -j12 --jobserver-auth=fifo:/tmp/GMfifo1610405 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/misc/third_party' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[5]: Nothing to be done for 'check_add_r'. make[5]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/misc/third_party' -/usr/bin/make -C third_party_static -j12 --jobserver-auth=fifo:/tmp/GMfifo2963945 check_add_r || exit 5 +/usr/bin/make -C third_party_static -j12 --jobserver-auth=fifo:/tmp/GMfifo1610405 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/misc/third_party_static' make[5]: warning: -j12 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: @@ -97421,10 +97457,10 @@ Warning: non-existent sub-project "hgvs" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" -/usr/bin/make -C jsonwrapp -j12 --jobserver-auth=fifo:/tmp/GMfifo2963945 check_add_r || exit 5 +/usr/bin/make -C jsonwrapp -j12 --jobserver-auth=fifo:/tmp/GMfifo1610405 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/misc/jsonwrapp' make[5]: warning: -j12 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo2964085 check_add_r || exit 5 +/usr/bin/make -C test -j12 --jobserver-auth=fifo:/tmp/GMfifo1610431 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/misc/jsonwrapp/test' make[6]: warning: -j12 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/misc/jsonwrapp/test' @@ -97446,7 +97482,7 @@ make[4]: Leaving directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/misc' /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" -/usr/bin/make -C app -j12 --jobserver-auth=fifo:/tmp/GMfifo2959194 check_add_r || exit 5 +/usr/bin/make -C app -j12 --jobserver-auth=fifo:/tmp/GMfifo1608235 check_add_r || exit 5 make[4]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app' make[4]: warning: -j12 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "asn2asn"' @@ -97463,7 +97499,7 @@ Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" -/usr/bin/make -C blast -j12 --jobserver-auth=fifo:/tmp/GMfifo2964188 check_add_r || exit 5 +/usr/bin/make -C blast -j12 --jobserver-auth=fifo:/tmp/GMfifo1610448 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blast' @@ -97529,7 +97565,7 @@ Warning: non-existent sub-project "grid" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" -/usr/bin/make -C igblast -j12 --jobserver-auth=fifo:/tmp/GMfifo2964188 check_add_r || exit 5 +/usr/bin/make -C igblast -j12 --jobserver-auth=fifo:/tmp/GMfifo1610448 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/igblast' @@ -97547,7 +97583,7 @@ Warning: non-existent sub-project "dustmasker" /bin/echo 'Warning: non-existent sub-project "segmasker"' Warning: non-existent sub-project "segmasker" -/usr/bin/make -C blastdb -j12 --jobserver-auth=fifo:/tmp/GMfifo2964188 check_add_r || exit 5 +/usr/bin/make -C blastdb -j12 --jobserver-auth=fifo:/tmp/GMfifo1610448 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blastdb' make[5]: warning: -j12 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-igblast-1.20.0/c++/GCC1420-DebugOptMT64/build/app/blastdb' @@ -97692,7 +97728,7 @@ ABS -- [util/lmdb] lmdb_test.sh 3 ABS -- [util/lmdb] lmdb_test.sh 4 ABS -- [util/lmdb] lmdb_test.sh 5 -OK -- [serial/datatool] datatool.sh (real 0.44, user 0.28, sys 0.14) +OK -- [serial/datatool] datatool.sh (real 0.55, user 0.39, sys 0.18) SKP -- [serial/datatool] datatool_xml.sh ABS -- [objtools/blast/seqdb_reader/test] scan_blastdb_mt ABS -- [objtools/blast/seqdb_reader/test] scan_blastdb_st @@ -97764,8 +97800,8 @@ dpkg-gencontrol: warning: package igblast: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--sourcedirectory=c\+\+ dh_builddeb -O--sourcedirectory=c\+\+ -dpkg-deb: building package 'igblast-dbgsym' in '../igblast-dbgsym_1.20.0-2_arm64.deb'. dpkg-deb: building package 'igblast' in '../igblast_1.20.0-2_arm64.deb'. +dpkg-deb: building package 'igblast-dbgsym' in '../igblast-dbgsym_1.20.0-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-igblast_1.20.0-2_arm64.buildinfo dpkg-genchanges --build=binary -O../ncbi-igblast_1.20.0-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -97773,12 +97809,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/921162/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/921162/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/225134 and its subdirectories -I: Current time: Sun Mar 9 15:21:44 -12 2025 -I: pbuilder-time-stamp: 1741576904 +I: removing directory /srv/workspace/pbuilder/921162 and its subdirectories +I: Current time: Mon Apr 13 01:42:50 +14 2026 +I: pbuilder-time-stamp: 1775994170