Diff of the two buildlogs: -- --- b1/build.log 2025-02-27 01:27:55.843880730 +0000 +++ b2/build.log 2025-02-27 01:31:32.722100594 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Tue Mar 31 19:48:33 -12 2026 -I: pbuilder-time-stamp: 1775029713 +I: Current time: Thu Feb 27 15:27:58 +14 2025 +I: pbuilder-time-stamp: 1740619678 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,51 +24,84 @@ dpkg-source: info: applying numpy-2.x I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/176025/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1231987/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 27 01:28 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1231987/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1231987/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='176025' - PS1='# ' - PS2='> ' + INVOCATION_ID=f06ed615b6e7420397bdac64a531d597 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1231987 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mGBCTcpP/pbuilderrc_Vfjy --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mGBCTcpP/b1 --logfile b1/build.log r-cran-fastcluster_1.2.6-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mGBCTcpP/pbuilderrc_9BkN --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mGBCTcpP/b2 --logfile b2/build.log r-cran-fastcluster_1.2.6-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/176025/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1231987/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -352,7 +384,7 @@ Get: 231 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.13.2-1 [1068 B] Get: 232 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.14.1-4 [18.5 MB] -Fetched 138 MB in 1s (172 MB/s) +Fetched 138 MB in 1s (151 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19913 files and directories currently installed.) @@ -1116,8 +1148,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Apr 1 07:49:23 UTC 2026. -Universal Time is now: Wed Apr 1 07:49:23 UTC 2026. +Local time is now: Thu Feb 27 01:29:19 UTC 2025. +Universal Time is now: Thu Feb 27 01:29:19 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14+b1) ... @@ -1333,7 +1365,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/r-cran-fastcluster-1.2.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-fastcluster_1.2.6-2_source.changes +I: user script /srv/workspace/pbuilder/1231987/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1231987/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-cran-fastcluster-1.2.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-cran-fastcluster_1.2.6-2_source.changes dpkg-buildpackage: info: source package r-cran-fastcluster dpkg-buildpackage: info: source version 1.2.6-2 dpkg-buildpackage: info: source distribution unstable @@ -1401,8 +1437,8 @@ Copyright: * Until package version 1.1.23: (c) 2011 Daniel Müllner * All changes from version 1.1.24 on: (c) Google Inc. -Dimension: 6 -Number of points: 21 +Dimension: 4 +Number of points: 51 Real distance values: Method: single...OK. Method: complete...OK. @@ -1419,8 +1455,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 8 -Number of points: 15 +Dimension: 13 +Number of points: 86 Real distance values: Method: single...OK. Method: complete...OK. @@ -1437,8 +1473,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 17 -Number of points: 61 +Dimension: 19 +Number of points: 90 Real distance values: Method: single...OK. Method: complete...OK. @@ -1455,8 +1491,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 3 -Number of points: 60 +Dimension: 10 +Number of points: 11 Real distance values: Method: single...OK. Method: complete...OK. @@ -1473,8 +1509,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 4 -Number of points: 46 +Dimension: 9 +Number of points: 10 Real distance values: Method: single...OK. Method: complete...OK. @@ -1491,8 +1527,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 12 -Number of points: 93 +Dimension: 10 +Number of points: 41 Real distance values: Method: single...OK. Method: complete...OK. @@ -1509,8 +1545,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 10 -Number of points: 99 +Dimension: 6 +Number of points: 92 Real distance values: Method: single...OK. Method: complete...OK. @@ -1527,8 +1563,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 8 -Number of points: 96 +Dimension: 17 +Number of points: 49 Real distance values: Method: single...OK. Method: complete...OK. @@ -1545,8 +1581,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 10 -Number of points: 46 +Dimension: 18 +Number of points: 90 Real distance values: Method: single...OK. Method: complete...OK. @@ -1564,7 +1600,7 @@ Method: centroid...OK. Method: median...OK. Dimension: 18 -Number of points: 99 +Number of points: 18 Real distance values: Method: single...OK. Method: complete...OK. @@ -1591,9 +1627,9 @@ Copyright: * Until package version 1.1.23: (c) 2011 Daniel Müllner * All changes from version 1.1.24 on: (c) Google Inc. -Seed: 350648513 -Dimension: 10 -Number of points: 149 +Seed: 324634556 +Dimension: 9 +Number of points: 79 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1606,7 +1642,7 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 7.41368715545587...Method: single...OK. +Metric: minkowski...p: 1.408155826812953...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. @@ -1619,8 +1655,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 2 -Number of points: 185 +Dimension: 8 +Number of points: 102 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1633,9 +1669,9 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 6.566696623547966...Method: single...OK. -Metric: cosine...Skip this test: NaN dissimilarity value. -Metric: correlation...Skip this test: NaN dissimilarity value. +Metric: minkowski...p: 8.455781087412726...Method: single...OK. +Metric: cosine...Method: single...OK. +Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. @@ -1646,8 +1682,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 6 -Number of points: 169 +Dimension: 12 +Number of points: 114 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1660,7 +1696,7 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 8.12292354590652...Method: single...OK. +Metric: minkowski...p: 9.441248108434952...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. @@ -1673,8 +1709,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 8 -Number of points: 25 +Dimension: 11 +Number of points: 199 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1687,15 +1723,15 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 9.445584280802176...Method: single...OK. -Metric: cosine...ok +Metric: minkowski...p: 9.105195766617555...Method: single...OK. +Metric: cosine...Method: single...OK. +Metric: correlation...ok ---------------------------------------------------------------------- -Ran 3 tests in 38.031s +Ran 3 tests in 43.681s OK Method: single...OK. -Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. @@ -1706,8 +1742,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 9 -Number of points: 113 +Dimension: 10 +Number of points: 182 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1720,7 +1756,7 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 4.921061905327328...Method: single...OK. +Metric: minkowski...p: 6.891890696875819...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. @@ -1734,7 +1770,7 @@ Method: centroid...OK. Method: median...OK. Dimension: 9 -Number of points: 176 +Number of points: 20 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1747,7 +1783,7 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 2.2457992208514614...Method: single...OK. +Metric: minkowski...p: 6.483221375453264...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. @@ -1760,8 +1796,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 3 -Number of points: 104 +Dimension: 2 +Number of points: 39 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1774,9 +1810,9 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 7.631712205807993...Method: single...OK. -Metric: cosine...Method: single...OK. -Metric: correlation...Method: single...OK. +Metric: minkowski...p: 6.38766426070328...Method: single...OK. +Metric: cosine...Skip this test: NaN dissimilarity value. +Metric: correlation...Skip this test: NaN dissimilarity value. Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: canberra...Method: single...OK. @@ -1787,8 +1823,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 5 -Number of points: 43 +Dimension: 11 +Number of points: 67 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1801,7 +1837,7 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 9.755989914097087...Method: single...OK. +Metric: minkowski...p: 4.3753446225423644...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. @@ -1814,8 +1850,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 12 -Number of points: 88 +Dimension: 6 +Number of points: 54 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1828,7 +1864,7 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 7.804038150258249...Method: single...OK. +Metric: minkowski...p: 6.573825412179799...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. @@ -1841,8 +1877,8 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Dimension: 9 -Number of points: 32 +Dimension: 8 +Number of points: 127 Metric: hamming...Method: single...OK. Metric: jaccard...Method: single...OK. Metric: yule...Method: single...OK. @@ -1855,7 +1891,7 @@ Metric: sqeuclidean...Method: single...OK. Metric: cityblock...Method: single...OK. Metric: chebychev...Method: single...OK. -Metric: minkowski...p: 1.5223115065897495...Method: single...OK. +Metric: minkowski...p: 4.11870684532377...Method: single...OK. Metric: cosine...Method: single...OK. Metric: correlation...Method: single...OK. Metric: hamming...Method: single...OK. @@ -1868,9 +1904,9 @@ Method: ward...OK. Method: centroid...OK. Method: median...OK. -Seed: 350648513 -Seed: 834913578 -Seed: 310690547 +Seed: 324634556 +Seed: 590116355 +Seed: 624423119 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_prep -O--buildsystem=pybuild -O--sourcedirectory=src/python @@ -1996,9 +2032,9 @@ dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=src/python dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=src/python dpkg-deb: building package 'r-cran-fastcluster-dbgsym' in '../r-cran-fastcluster-dbgsym_1.2.6-2_arm64.deb'. -dpkg-deb: building package 'python3-fastcluster' in '../python3-fastcluster_1.2.6-2_arm64.deb'. -dpkg-deb: building package 'r-cran-fastcluster' in '../r-cran-fastcluster_1.2.6-2_arm64.deb'. dpkg-deb: building package 'python3-fastcluster-dbgsym' in '../python3-fastcluster-dbgsym_1.2.6-2_arm64.deb'. +dpkg-deb: building package 'r-cran-fastcluster' in '../r-cran-fastcluster_1.2.6-2_arm64.deb'. +dpkg-deb: building package 'python3-fastcluster' in '../python3-fastcluster_1.2.6-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-cran-fastcluster_1.2.6-2_arm64.buildinfo dpkg-genchanges --build=binary -O../r-cran-fastcluster_1.2.6-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2006,12 +2042,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1231987/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1231987/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/176025 and its subdirectories -I: Current time: Tue Mar 31 19:50:54 -12 2026 -I: pbuilder-time-stamp: 1775029854 +I: removing directory /srv/workspace/pbuilder/1231987 and its subdirectories +I: Current time: Thu Feb 27 15:31:31 +14 2025 +I: pbuilder-time-stamp: 1740619891