Diff of the two buildlogs: -- --- b1/build.log 2025-03-27 06:27:46.765170161 +0000 +++ b2/build.log 2025-03-27 06:33:53.912624047 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 29 00:39:10 -12 2026 -I: pbuilder-time-stamp: 1777466350 +I: Current time: Thu Mar 27 20:27:50 +14 2025 +I: pbuilder-time-stamp: 1743056870 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying 0002-Fix-calculation-tolerance-on-i386.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3420445/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2213902/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 27 06:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2213902/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2213902/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='65f70404b9324247b66d05521d0bfc30' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3420445' - PS1='# ' - PS2='> ' + INVOCATION_ID=0b6c8a6a2a8045839a01a6a27c30ec7d + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2213902 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0Gn43ntp/pbuilderrc_IjkQ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0Gn43ntp/b1 --logfile b1/build.log refnx_0.1.53-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0Gn43ntp/pbuilderrc_lysF --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0Gn43ntp/b2 --logfile b2/build.log refnx_0.1.53-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-32-cloud-arm64 #1 SMP Debian 6.1.129-1 (2025-03-06) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3420445/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2213902/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -514,7 +546,7 @@ Get: 348 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1.1 [35.4 kB] Get: 349 http://deb.debian.org/debian trixie/main arm64 xserver-common all 2:21.1.16-1 [2409 kB] Get: 350 http://deb.debian.org/debian trixie/main arm64 xvfb arm64 2:21.1.16-1 [3122 kB] -Fetched 385 MB in 3s (115 MB/s) +Fetched 385 MB in 1s (283 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19921 files and directories currently installed.) @@ -1643,8 +1675,8 @@ Setting up tzdata (2025b-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Apr 29 12:41:13 UTC 2026. -Universal Time is now: Wed Apr 29 12:41:13 UTC 2026. +Local time is now: Thu Mar 27 06:28:40 UTC 2025. +Universal Time is now: Thu Mar 27 06:28:40 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -1968,7 +2000,11 @@ fakeroot is already the newest version (1.37.1-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/refnx-0.1.53/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../refnx_0.1.53-1_source.changes +I: user script /srv/workspace/pbuilder/2213902/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2213902/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/refnx-0.1.53/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../refnx_0.1.53-1_source.changes dpkg-buildpackage: info: source package refnx dpkg-buildpackage: info: source version 0.1.53-1 dpkg-buildpackage: info: source distribution unstable @@ -1997,9 +2033,9 @@ I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/refnx-0.1.53/.pybuild/cpython3_3.13_refnx * Building wheel... /usr/bin/ld: objects/test_openmp.o: in function `main._omp_fn.0': -/tmp/tmp9nk0tkel/test_openmp.c:5:(.text+0xc): undefined reference to `omp_get_num_threads' +/tmp/tmpx0f_x102/test_openmp.c:5:(.text+0xc): undefined reference to `omp_get_num_threads' /usr/bin/ld: objects/test_openmp.o: in function `main': -/tmp/tmp9nk0tkel/test_openmp.c:3:(.text.startup+0x20): undefined reference to `GOMP_parallel' +/tmp/tmpx0f_x102/test_openmp.c:3:(.text.startup+0x20): undefined reference to `GOMP_parallel' collect2: error: ld returned 1 exit status /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: ./refnx/reflect/_creflect.pxd tree = Parsing.p_module(s, pxd, full_module_name) @@ -2647,7 +2683,7 @@ Copying refnx.egg-info to build/bdist.linux-aarch64/wheel/./refnx-0.1.53.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/refnx-0.1.53.dist-info/WHEEL -creating '/build/reproducible-path/refnx-0.1.53/.pybuild/cpython3_3.13_refnx/.tmp-o8hunyud/refnx-0.1.53-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it +creating '/build/reproducible-path/refnx-0.1.53/.pybuild/cpython3_3.13_refnx/.tmp-swylood2/refnx-0.1.53-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'refnx/__init__.py' adding 'refnx/conftest.py' adding 'refnx/version.py' @@ -4012,7 +4048,7 @@ =============================== warnings summary =============================== refnx/reflect/_app/tests/test_app.py: 12 warnings refnx/reflect/tests/test_reflect.py: 22 warnings - /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3476439) is multi-threaded, use of fork() may lead to deadlocks in the child. + /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=2240325) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() refnx/reflect/_app/tests/test_app.py::test_mcmc_fit_and_reprocess @@ -4021,16 +4057,16 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================= slowest 10 durations ============================= -147.66s call refnx/analysis/tests/test_curvefitter.py::TestFitterGauss::test_best_weighted -41.03s call refnx/reflect/tests/test__lipid.py::test_lipid_leaflet_example -26.10s call refnx/analysis/tests/test_globalfitting.py::TestGlobalFitting::test_multipledataset_corefinement -22.24s call refnx/reflect/tests/test__interactive_modeller.py::Test__InteractiveModeller::test_fit_runs -13.79s call refnx/reflect/tests/test_reflect.py::TestReflect::test_abeles_vectorised -8.33s call refnx/reflect/_app/tests/test_app.py::test_mcmc_fit_and_reprocess -8.07s call refnx/reflect/tests/test_reflect.py::TestReflect::test_resolution_speed_comparator -7.96s call refnx/analysis/tests/test_curvefitter.py::TestCurveFitter::test_mcmc -6.70s call refnx/reflect/tests/test_reflect.py::TestReflect::test_reflectivity_emcee -5.82s call refnx/reflect/tests/test_reflect.py::TestReflect::test_reflectivity_fit +39.26s call refnx/analysis/tests/test_curvefitter.py::TestFitterGauss::test_best_weighted +19.19s call refnx/reflect/tests/test__lipid.py::test_lipid_leaflet_example +7.09s call refnx/reflect/tests/test__interactive_modeller.py::Test__InteractiveModeller::test_fit_runs +6.02s call refnx/reflect/tests/test_reflect.py::TestReflect::test_resolution_speed_comparator +5.36s call refnx/reflect/_app/tests/test_app.py::test_mcmc_fit_and_reprocess +4.31s call refnx/analysis/tests/test_globalfitting.py::TestGlobalFitting::test_multipledataset_corefinement +3.99s call refnx/reflect/tests/test_reflect.py::TestReflect::test_reflectivity_fit +2.88s call refnx/reflect/tests/test_reflect.py::TestReflect::test_reflectivity_emcee +2.75s call refnx/analysis/tests/test_curvefitter.py::TestCurveFitter::test_mcmc +2.31s call refnx/analysis/tests/test_curvefitter.py::TestFitterGauss::test_all_minimisers =========================== short test summary info ============================ SKIPPED [1] refnx/reduce/tests/test_batch_reduce.py:31: No data directory available SKIPPED [1] refnx/reduce/tests/test_batch_reduce.py:52: No data directory available @@ -4090,7 +4126,7 @@ SKIPPED [1] refnx/reduce/tests/test_reduce.py:663: No data directory available SKIPPED [1] refnx/reduce/tests/test_reduce.py:673: No data directory available SKIPPED [1] refnx/reduce/tests/test_xray.py:5: No data directory available -=========== 305 passed, 58 skipped, 35 warnings in 327.31s (0:05:27) =========== +=========== 305 passed, 58 skipped, 35 warnings in 117.99s (0:01:57) =========== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -4133,8 +4169,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-refnx-dbgsym' in '../python3-refnx-dbgsym_0.1.53-1_arm64.deb'. dpkg-deb: building package 'python3-refnx' in '../python3-refnx_0.1.53-1_arm64.deb'. +dpkg-deb: building package 'python3-refnx-dbgsym' in '../python3-refnx-dbgsym_0.1.53-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../refnx_0.1.53-1_arm64.buildinfo dpkg-genchanges --build=binary -O../refnx_0.1.53-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4142,12 +4178,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2213902/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2213902/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3420445 and its subdirectories -I: Current time: Wed Apr 29 00:50:45 -12 2026 -I: pbuilder-time-stamp: 1777467045 +I: removing directory /srv/workspace/pbuilder/2213902 and its subdirectories +I: Current time: Thu Mar 27 20:33:52 +14 2025 +I: pbuilder-time-stamp: 1743057232