Diff of the two buildlogs: -- --- b1/build.log 2024-12-04 05:05:27.678126488 +0000 +++ b2/build.log 2024-12-04 05:09:18.303722550 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 3 17:02:11 -12 2024 -I: pbuilder-time-stamp: 1733288531 +I: Current time: Wed Dec 4 19:05:41 +14 2024 +I: pbuilder-time-stamp: 1733288741 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying ignore_flaky_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/11833/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/17002/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 4 05:05 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/17002/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/17002/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='5cedde4a38fb480c96cec4d8e4519139' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='11833' - PS1='# ' - PS2='> ' + INVOCATION_ID=598c68b286b14be39adb5ca81091d41e + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=17002 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dQ7GXA8h/pbuilderrc_pDD4 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dQ7GXA8h/b1 --logfile b1/build.log barclay_5.0.0+dfsg-1.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dQ7GXA8h/pbuilderrc_JNxU --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dQ7GXA8h/b2 --logfile b2/build.log barclay_5.0.0+dfsg-1.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/11833/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/17002/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -392,7 +424,7 @@ Get: 255 http://deb.debian.org/debian trixie/main armhf libjacoco-java all 0.8.12-1 [647 kB] Get: 256 http://deb.debian.org/debian trixie/main armhf libjoptsimple-java all 5.0.4-7 [73.7 kB] Get: 257 http://deb.debian.org/debian trixie/main armhf libmockito-java all 3.3.0-2 [510 kB] -Fetched 255 MB in 5s (55.7 MB/s) +Fetched 255 MB in 5s (48.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) @@ -1239,8 +1271,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Dec 4 05:03:30 UTC 2024. -Universal Time is now: Wed Dec 4 05:03:30 UTC 2024. +Local time is now: Wed Dec 4 05:07:11 UTC 2024. +Universal Time is now: Wed Dec 4 05:07:11 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... @@ -1646,7 +1678,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/barclay-5.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barclay_5.0.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/17002/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/17002/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/barclay-5.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../barclay_5.0.0+dfsg-1_source.changes dpkg-buildpackage: info: source package barclay dpkg-buildpackage: info: source version 5.0.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1669,7 +1705,7 @@ jh_clean -O--buildsystem=gradle rm -fr debian/_jh_manifest* debian/_jh_build* Duplicate specification "unlink|u" for option "u" -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper debian/rules override_dh_clean @@ -1711,7 +1747,7 @@ dh_auto_build -- jar mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=3 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=4 jar openjdk version "21.0.5" 2024-10-15 OpenJDK Runtime Environment (build 21.0.5+11-Debian-1) OpenJDK Server VM (build 21.0.5+11-Debian-1, mixed mode, sharing) @@ -1719,18 +1755,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.682 secs. -The client will now receive all logging from the daemon (pid: 19144). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-19144.out.log +An attempt to start the daemon took 3.108 secs. +The client will now receive all logging from the daemon (pid: 25212). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-25212.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 3 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@f59a52 -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@f59a52 -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d9d468 +Using 4 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@429bbb +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@429bbb +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7cdfc0 Starting Build Compiling initialization script '/build/reproducible-path/barclay-5.0.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@13f4505 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@753ac5 Compiling initialization script '/build/reproducible-path/barclay-5.0.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle) @@ -1749,15 +1785,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e28d8 +Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@ef5f05 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d9d468 -Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@8d24ba -Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1fd8184 -:compileJava (Thread[#46,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7cdfc0 +Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d28790 +Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@12e3b3 +:compileJava (Thread[#47,Task worker for ':' Thread 2,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.012 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@b930be +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c33961 Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian @@ -1770,7 +1806,7 @@ Replacing org.freemarker:freemarker:jar:2.3.30 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian -Up-to-date check for task ':compileJava' took 4.066 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 3.9 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. @@ -1793,32 +1829,32 @@ final URL[] urls = {new URL("file", "", jarPath)}; ^ 6 warnings -:compileJava (Thread[#46,Task worker for ':',5,main]) completed. Took 10.932 secs. -:processResources (Thread[#46,Task worker for ':',5,main]) started. +:compileJava (Thread[#47,Task worker for ':' Thread 2,5,main]) completed. Took 11.675 secs. +:processResources (Thread[#47,Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.058 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.026 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#46,Task worker for ':',5,main]) completed. Took 0.139 secs. -:classes (Thread[#46,Task worker for ':',5,main]) started. +:processResources (Thread[#47,Task worker for ':' Thread 2,5,main]) completed. Took 0.105 secs. +:classes (Thread[#47,Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#46,Task worker for ':',5,main]) completed. Took 0.005 secs. -:debianMavenPom (Thread[#46,Task worker for ':',5,main]) started. +:classes (Thread[#47,Task worker for ':' Thread 2,5,main]) completed. Took 0.002 secs. +:debianMavenPom (Thread[#47,Task worker for ':' Thread 2,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.004 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.002 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/barclay-5.0.0+dfsg/build/debian/barclay.pom -:debianMavenPom (Thread[#46,Task worker for ':',5,main]) completed. Took 0.187 secs. -:jar (Thread[#46,Task worker for ':',5,main]) started. +:debianMavenPom (Thread[#47,Task worker for ':' Thread 2,5,main]) completed. Took 0.208 secs. +:jar (Thread[#47,Task worker for ':' Thread 2,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.021 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.029 secs. It is not up-to-date because: No history is available. -:jar (Thread[#46,Task worker for ':',5,main]) completed. Took 0.156 secs. +:jar (Thread[#47,Task worker for ':' Thread 2,5,main]) completed. Took 0.18 secs. -BUILD SUCCESSFUL in 28s +BUILD SUCCESSFUL in 30s 4 actionable tasks: 4 executed make[1]: Leaving directory '/build/reproducible-path/barclay-5.0.0+dfsg' jh_build -O--buildsystem=gradle @@ -1830,7 +1866,7 @@ LC_ALL=C.UTF-8 dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=3 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=barclay -Dfile.encoding=UTF-8 --parallel --max-workers=4 test openjdk version "21.0.5" 2024-10-15 OpenJDK Runtime Environment (build 21.0.5+11-Debian-1) OpenJDK Server VM (build 21.0.5+11-Debian-1, mixed mode, sharing) @@ -1838,17 +1874,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 2.51 secs. -The client will now receive all logging from the daemon (pid: 20440). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-20440.out.log +An attempt to start the daemon took 3.014 secs. +The client will now receive all logging from the daemon (pid: 25390). The daemon log file: /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/daemon/4.4.1/daemon-25390.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 3 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@28ef92 -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@28ef92 -Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1968c8 +Using 4 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@188d07d +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@188d07d +Creating new cache for fileHashes, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e2c26f Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@d239e7 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@cc2a08 Settings evaluated using settings file '/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/barclay-5.0.0+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'barclay' instead of the name of the root directory 'barclay-5.0.0+dfsg' @@ -1864,15 +1900,15 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e73932 +Creating new cache for annotation-processors, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c6050a Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1968c8 -Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@8cca87 -Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7cfe5e +Creating new cache for resourceHashesCache, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e2c26f +Creating new cache for taskHistory, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@84162d +Creating new cache for outputFiles, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@11f53aa :compileJava (Thread[#46,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.011 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@49df12 +Putting task artifact state for task ':compileJava' into context took 0.013 secs. +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/barclay-5.0.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@1c30d2c Loading the Maven rules... Replacing net.sf.jopt-simple:jopt-simple:jar:5.0.3 -> net.sf.jopt-simple:jopt-simple:jar:debian Replacing org.apache.commons:commons-lang3:jar:3.4 -> org.apache.commons:commons-lang3:jar:debian @@ -1885,15 +1921,15 @@ Replacing org.freemarker:freemarker:jar:2.3.30 -> org.freemarker:freemarker:jar:debian Replacing com.google.code.gson:gson:jar:2.2.2 -> com.google.code.gson:gson:jar:debian Passing through com.google.code.gson:gson-parent:jar:debian -Skipping task ':compileJava' as it is up-to-date (took 1.259 secs). +Skipping task ':compileJava' as it is up-to-date (took 1.296 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#46,Task worker for ':',5,main]) completed. Took 1.339 secs. +:compileJava (Thread[#46,Task worker for ':',5,main]) completed. Took 1.394 secs. :processResources (Thread[#46,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.043 secs). +Skipping task ':processResources' as it is up-to-date (took 0.029 secs). :processResources UP-TO-DATE -:processResources (Thread[#46,Task worker for ':',5,main]) completed. Took 0.069 secs. +:processResources (Thread[#46,Task worker for ':',5,main]) completed. Took 0.041 secs. :classes (Thread[#46,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. @@ -1915,63 +1951,63 @@ Passing through net.bytebuddy:byte-buddy-dep:jar:debian Passing through org.ow2.asm:asm:jar:debian Passing through org.ow2.asm:asm-commons:jar:debian -Up-to-date check for task ':compileTestJava' took 5.527 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 5.161 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[#46,Task worker for ':',5,main]) completed. Took 12.315 secs. -:processTestResources (Thread[#46,Task worker for ':',5,main]) started. +:compileTestJava (Thread[#46,Task worker for ':',5,main]) completed. Took 13.043 secs. +:processTestResources (Thread[#29,Daemon worker,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.101 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.071 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[#46,Task worker for ':',5,main]) completed. Took 0.251 secs. -:testClasses (Thread[#46,Task worker for ':',5,main]) started. +:processTestResources (Thread[#29,Daemon worker,5,main]) completed. Took 0.21 secs. +:testClasses (Thread[#29,Daemon worker,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#46,Task worker for ':',5,main]) completed. Took 0.001 secs. -:test (Thread[#46,Task worker for ':',5,main]) started. +:testClasses (Thread[#29,Daemon worker,5,main]) completed. Took 0.002 secs. +:test (Thread[#29,Daemon worker,5,main]) started. :test -Putting task artifact state for task ':test' into context took 0.013 secs. -Up-to-date check for task ':test' took 1.578 secs. It is not up-to-date because: +Putting task artifact state for task ':test' into context took 0.002 secs. +Up-to-date check for task ':test' took 1.618 secs. It is not up-to-date because: Task.upToDateWhen is false. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-armhf/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath10999052755863822913txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/barclay-5.0.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-armhf/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath16949851709444558006txt -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. -Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@8a2757, [], /tmp/enabledExpansion927367960313374453.args, [Ljava.lang.String;@15a2f2c, [Ljava.lang.String;@117daa, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@e2ce01, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion1827549224601065310.args, [Ljava.lang.String;@15a2f2c, [Ljava.lang.String;@1cf977e, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@1d784cd, [], /tmp/enabledExpansion10495800123833471014.list, [Ljava.lang.String;@15a2f2c, [Ljava.lang.String;@1417360, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@1e1b59, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion23107628778453809.list, [Ljava.lang.String;@15a2f2c, [Ljava.lang.String;@d9a5c, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@11a431f, [], /tmp/enabledExpansion613746306061469498.args, [Ljava.lang.String;@15a2f2c, [Ljava.lang.String;@9cb63e, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1dfcef3, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion2247841335328464973.args, [Ljava.lang.String;@15a2f2c, [Ljava.lang.String;@15cf1f0, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1f5c0a1, [], /tmp/enabledExpansion14132596976450998810.list, [Ljava.lang.String;@15a2f2c, [Ljava.lang.String;@166ac89, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@484774, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion1609370629983682772.list, [Ljava.lang.String;@15a2f2c, [Ljava.lang.String;@f86656, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@33548b, [], [Ljava.lang.String;@17ae459, [Ljava.lang.String;@6dcbca, [Ljava.lang.String;@ad805e, [Ljava.lang.String;@ba060c)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@179537e, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@17ae459, [Ljava.lang.String;@6dcbca, [Ljava.lang.String;@1577a7b, [Ljava.lang.String;@8840fa)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@11f5243, [], /tmp/enabledExpansion8621542923978290424.args, [Ljava.lang.String;@5f9f3c, [Ljava.lang.String;@97953b, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@b04194, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion17149864635215496795.args, [Ljava.lang.String;@5f9f3c, [Ljava.lang.String;@47ed27, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[2](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@78f0b8, [], /tmp/enabledExpansion12174225655995837914.list, [Ljava.lang.String;@5f9f3c, [Ljava.lang.String;@1501835, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[3](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@1e9ab8a, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion4383207928234431001.list, [Ljava.lang.String;@5f9f3c, [Ljava.lang.String;@19cf11c, false)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[4](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@15cc50, [], /tmp/enabledExpansion517768709099815009.args, [Ljava.lang.String;@5f9f3c, [Ljava.lang.String;@4b4bbc, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[5](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@11c257d, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion15697828968841721949.args, [Ljava.lang.String;@5f9f3c, [Ljava.lang.String;@97dff2, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[6](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@bf64ff, [], /tmp/enabledExpansion2098123123031631834.list, [Ljava.lang.String;@5f9f3c, [Ljava.lang.String;@7c62cc, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromExpansionFile[7](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$SuppressedListFileArguments@1bad63e, [APPEND_TO_COLLECTIONS], /tmp/enabledExpansion10100713497376686234.list, [Ljava.lang.String;@5f9f3c, [Ljava.lang.String;@6c2ec5, true)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[0](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@14b0919, [], [Ljava.lang.String;@1302c5c, [Ljava.lang.String;@17173f8, [Ljava.lang.String;@f53119, [Ljava.lang.String;@1b7e31f)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testCollectionFromListFileMixed[1](org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests$EnabledListFileArguments@17abd67, [APPEND_TO_COLLECTIONS], [Ljava.lang.String;@1302c5c, [Ljava.lang.String;@17173f8, [Ljava.lang.String;@c87ceb, [Ljava.lang.String;@f28cae)(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testCollectionThatCannotBeAutoInitialized(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testGetCommandLineWithExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@862bd3, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@862bd3, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@106fc9f, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@106fc9f, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@e98634, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@e98634, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@9c0ea6, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@b089a1, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[0]([Ljava.lang.String;@c3ac61, [APPEND_TO_COLLECTIONS], [foo, bar, baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[1]([Ljava.lang.String;@c3ac61, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[2]([Ljava.lang.String;@12fd71f, [APPEND_TO_COLLECTIONS], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[3]([Ljava.lang.String;@12fd71f, [], [baz, frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[4]([Ljava.lang.String;@1359d23, [APPEND_TO_COLLECTIONS], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[5]([Ljava.lang.String;@1359d23, [], [frob])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[6]([Ljava.lang.String;@64acca, [APPEND_TO_COLLECTIONS], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testInitializedCollections[7]([Ljava.lang.String;@55e9ff, [[]], [foo, bar])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testPositionalCollectionFromExpansionFile(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) Running Test: Test method testRejectNonCollectionFileExpansionSuppression(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@9662e6, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@9662e6, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) -Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@1bce8c0, [Ljava.lang.String;@8d0cc1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@144f0bc, [Ljava.lang.String;@e029b9)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@9965cf, [Ljava.lang.String;@3a15c4)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1a8e730, [Ljava.lang.String;@e18284)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testUninitializedCollections[0]([Ljava.lang.String;@d0dbb3, [], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method testUninitializedCollections[1]([Ljava.lang.String;@d0dbb3, [APPEND_TO_COLLECTIONS], [L1, L2], [S1], [HS1], [P1, P2])(org.broadinstitute.barclay.argparser.CollectionArgumentUnitTests) +Running Test: Test method passingMutexCheck[0](simple mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@1e3d1db, [Ljava.lang.String;@1efde2e)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[1](collection mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1475021, [Ljava.lang.String;@72546a)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[2](collection multiple mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@48d61c, [Ljava.lang.String;@17b2b42)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method passingMutexCheck[3](scalar mixed, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@aa0517, [Ljava.lang.String;@156697d)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAbbreviationsAreRejected(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testAdvancedArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgCollectionNotInitialized(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@156d33, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@1b87ab2, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@274199, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[0](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@26197d, [--FROBNICATION_FLAVOR , --SHMIGGLE_TYPE , --arguments_file , --FROBNICATION_THRESHOLD,-T , --TRUTHINESS ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[1](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$FrobnicateArguments@4b4613, [--deprecatedString, This argument is DEPRECATED, and will be removed in a future])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testArgUsage[2](org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1a39319, [--collection , --scalar ])(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentCollection(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentNameCollision(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testArgumentUseClash(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -1990,11 +2026,11 @@ Running Test: Test method testEnumSet(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testEnumSetNegative(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testExperimentalFeatureUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@28e71d, [Ljava.lang.String;@17d5ebd)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@1f058dd, [Ljava.lang.String;@76a589)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@1d6c038, [Ljava.lang.String;@363f3f)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@17da004, [Ljava.lang.String;@3de810)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@d8e401, [Ljava.lang.String;@4595b7)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[0](no args, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@166a91b, [Ljava.lang.String;@468015)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[1](1 of group required, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@9b7ba8, [Ljava.lang.String;@194caef)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[2](mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@1cc3fb8, [Ljava.lang.String;@fdd9a)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[3](mega mutex, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MutexArguments@1a25a14, [Ljava.lang.String;@17a6469)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testFailingMutex[4](collection and scalar mutex mix, org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest$MixedCardinalityMutexArguments@1e3e9c, [Ljava.lang.String;@1aa9057)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagNoArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagWithPositionalFollowing(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testFlagsWithArguments(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2107,13 +2143,13 @@ Running Test: Test method testNotEnoughPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOnlyPrintNameOnce(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testOptionalOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@467833)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@187acc1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@4faf2)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@115527)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@46c231)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@14ff611)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@1b4cfcc)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[0]([Ljava.lang.String;@ce38b1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[1]([Ljava.lang.String;@dc0323)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[2]([Ljava.lang.String;@1b4df33)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[3]([Ljava.lang.String;@31aec1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[4]([Ljava.lang.String;@80dbc1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[5]([Ljava.lang.String;@aa2f87)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testOutOfRangesArguments[6]([Ljava.lang.String;@6cbf2c)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositionalDeprecated(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPositive(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testPrivateArgument(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2121,9 +2157,9 @@ Running Test: Test method testRequiredOnlyUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testRequiredOptionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@78a0c9)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@c5d6e1)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@2cf02e)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[0]([Ljava.lang.String;@106c6f)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[1]([Ljava.lang.String;@131ddc0)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testSetNonNullableArgumentsToNull[2]([Ljava.lang.String;@9f1624)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testUnexpectedPositional(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testVersionSpecialFlag(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) @@ -2134,19 +2170,19 @@ Version:null Running Test: Test method testWithBoundariesArgumentsForNoNumeric(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithDoubleBoundariesArgumentsForInteger(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@733450, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@1cf57f7, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@1288062, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@11ab948, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@502c49, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@1c33713, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@62daa3, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@107da70, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@79e6f5, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[0]([Ljava.lang.String;@1086eb2, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[1]([Ljava.lang.String;@6757cb, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[2]([Ljava.lang.String;@12dba1a, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[3]([Ljava.lang.String;@1a3a58, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[4]([Ljava.lang.String;@13d2323, null, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[5]([Ljava.lang.String;@135bf05, 1, null, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[6]([Ljava.lang.String;@1dcf520, null, 2.0, null)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[7]([Ljava.lang.String;@110dd62, null, null, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) +Running Test: Test method testWithinBoundariesArguments[8]([Ljava.lang.String;@f8d560, 1, 2.0, somestring)(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) Running Test: Test method testWithoutPositionalWithoutDefaultUsage(org.broadinstitute.barclay.argparser.CommandLineArgumentParserTest) -Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@62c890, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) -Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@34025c, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[0]([Ljava.lang.String;@cd56f4, 0)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) +Running Test: Test method testBasicPlugin[1]([Ljava.lang.String;@1f1187, 1)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[0](TestPluginWithRequiredArg, requiredStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDanglingFilterArguments[1](TestPluginWithOptionalArg, optionalStringArgForPlugin, fakeArgValue)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) Running Test: Test method testDefaultIncludePluginClass[0](class org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest$TestPluginBase, true)(org.broadinstitute.barclay.argparser.CommandLinePluginUnitTest) @@ -2626,401 +2662,401 @@ Test: Test method testMissingRequiredArgument(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@168e34f, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[0](pass, [Ljava.lang.String;@4826fa, true)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Running Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[1](no args, [Ljava.lang.String;@fa1232, false) STANDARD_ERROR ERROR: Option 'A' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[1](no args, [Ljava.lang.String;@a9b4ca, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[1](no args, [Ljava.lang.String;@fa1232, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. +Running Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false) STANDARD_ERROR ERROR: Option 'B' is required unless any of [Y, Z, M, N] are specified. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@7f192, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[2](1 of group required, [Ljava.lang.String;@1d344ab, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y +Running Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[3](mutex, [Ljava.lang.String;@144eba8, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[3](mutex, [Ljava.lang.String;@14b0b68, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[3](mutex, [Ljava.lang.String;@144eba8, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N +Running Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false) STANDARD_ERROR +Gradle suite > Gradle test > org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest.testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false) STANDARD_ERROR ERROR: Option 'A' cannot be used in conjunction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: USAGE: MutexOptions [options] USAGE: MutexOptions [options] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Usage: program [options...] Usage: program [options...] -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Version: null Version: null -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Options: Options: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --help --help -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -h Displays options specific to this tool. -h Displays options specific to this tool. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --stdhelp --stdhelp -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -H Displays options specific to this tool AND options common to all Picard command line -H Displays options specific to this tool AND options common to all Picard command line -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: tools. tools. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: --version Displays program version. --version Displays program version. -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N A=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N B=String Undocumented option Required. Cannot be used in conjuction with option(s) Y Z M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z M=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z N=String Undocumented option Required. Cannot be used in conjuction with option(s) A B Y Z -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Y=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N Z=String Undocumented option Required. Cannot be used in conjuction with option(s) A B M N -Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@18705f1, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: +Test: Test method testMutex[4](mega mutex, [Ljava.lang.String;@2ac3da, false)(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: Running Test: Test method testNonASCIIAccept(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) @@ -4055,7 +4091,6 @@ SHMIGGLE_TYPE=String Allowed shmiggle types. Default value: null. This option may be specified between 1 and 3 Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: times. -Gradle Test Executor 1 finished executing tests. times. Test: Test method testTooManyPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) produced standard out/err: @@ -4176,131 +4211,131 @@ Running Test: Test method testUsageWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositional(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) Running Test: Test method testUsageWithoutPositionalWithDefault(org.broadinstitute.barclay.argparser.LegacyCommandLineArgumentParserTest) -Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@1b3d9d, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@17d3423, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@1fe4f97, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@1e0a78b, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@f623bd, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@1b2649e, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@10f0b31, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@72f29c, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@67f2c1, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@d318b5, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@1fbfac8, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@1ad4a67, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@14f326c, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@1db051b, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@9f41a5, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@14e2de3, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@199c3ca, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@12f17c9, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@186ab, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@5db83e, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@16d9a22, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@77bcf6, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@1e6292a, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@b2a4b2, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@282b67, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@1941d4a, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@1ffc1ec, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@1a75471, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@19af672, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@1a1b6d5, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@cf419e, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@1405515, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@11f49ee, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@149e9f1, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@e974ee, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@15c0570, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@1a0914b, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@1a66050, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) -Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@176f6d7, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@cc480e, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@1bcda7f, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@15e26bc, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@1d2e649, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@216ad6, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@1221b2f, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@afbcff, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@63d612, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@74f9c4, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@1fc150b, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@f2b339, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testDefaultValueAsString[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@c09ff5, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@afc4e2, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@13d8db0, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@980835, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliasDisplayString[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@6a7c14, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@1dbedf0, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@d7a415, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@1a80b6b, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetArgumentAliases[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@775dc4, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$13@464fb3, arg, arg, [arg], arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$14@ebd6f8, arg, arg, [shortName, arg], shortName/arg)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$15@17b2e0, arg, fullName, [fullName], fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetLongName[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$16@1cc30c8, arg, fullName, [shortName, fullName], shortName/fullName)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[0](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$1@f72c6d, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[1](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$2@99629b, arg, true, 0)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[2](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$3@f5426d, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[3](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$4@16b6ce6, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[4](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$5@bf8780, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[5](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$6@12823d, arg, true, 27)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[6](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$7@603b14, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[7](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$8@c1ee43, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[8](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$9@aaf24e, arg, true, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[9](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$10@1b0986c, arg, false, null)(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[10](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$11@1e27aed, arg, true, [stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testIsOptional[11](org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest$12@e8d4b2, arg, true, [stuff, more stuff])(org.broadinstitute.barclay.argparser.NamedArgumentDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[0]([Ljava.lang.String;@1ee7e53, )(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[1]([Ljava.lang.String;@1febc5b, arg1)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) +Running Test: Test method testGetCommandLineDisplayString[2]([Ljava.lang.String;@e659f, arg1 arg2)(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testMinElementsGreaterThanMaxElements(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method testNonCollection(org.broadinstitute.barclay.argparser.PositionalArgumentsDefinitionUnitTest) Running Test: Test method recognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) Running Test: Test method unrecognizedValues(org.broadinstitute.barclay.argparser.StrictBooleanConverterTest) -Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@10668b9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@12dfad3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@e8f427)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@36e671)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@11cf08c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@19c8292)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@2ab0ef)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@9aa143)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@ea13e8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@11479df)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@177d841)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@fa979)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@11a8a75)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@12c45a8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@1bc6400)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@173cf55)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@13fd699)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@53a479)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@15cff26)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@18cf03e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@cf9d5e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@1b1bbea)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@2e6f9c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@f999d6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@1f6e3c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@557ae4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@1bcbd4c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@1fc5104)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@1b8c8d2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@1929f5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@f6a7e8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@c2215b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@1211fbf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@16b9bd7)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@96d1f1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@64a4a8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@e52e1b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@de4fed)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@74b41e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@c661ce)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@a53416)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@a679a3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@150c8d2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@167c4a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@1e15c2c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@18d6ab5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@4b5631)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@1190930)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@d14cb9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@11b8165)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@ee5f40)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@a0b7be)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@bedda3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@ec4b79)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@1902884)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@1018360)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@5b02d6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@2a6ba1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@1c11d0e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@abac78)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@29be99, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@205177, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@1a22f6a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@19e00f3, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1e5c8c6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@8a015a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@c93698, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1ab9c05)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@173978, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1b71d63, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1d03b66)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@10c004c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@90e5c4, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1371a8c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@38fc9b, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@ec37e1, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1c7bdf9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@f39db4, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1ea11c7, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@8dd687)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@171df08, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@188a1d8, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@989564)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@8c2bc, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1978758, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@27b874)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@1506156, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1d97df5, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@591b9b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@140cfff, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@ce791b, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@77c929)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@1e5761d, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1bddd4c, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@600fb0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@1dd6c85, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1758d05, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@16b352c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@198a68f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@a6730e, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@17f82fa)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@f742c2, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@55d059, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@bec3a3)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@1f12cc6, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@eb5259, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@34c718)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@11776af, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@568bee, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@19fe5a4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@ae7859, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@17ada37, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1b9ebfb)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) -Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@1d72deb, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@18044f3, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@35a14a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[0]([Ljava.lang.String;@19c2793)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[1]([Ljava.lang.String;@200651)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[2]([Ljava.lang.String;@eac5a2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[3]([Ljava.lang.String;@3ae730)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[4]([Ljava.lang.String;@fae845)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[5]([Ljava.lang.String;@12f8273)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[6]([Ljava.lang.String;@1cfc500)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[7]([Ljava.lang.String;@1855467)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[8]([Ljava.lang.String;@17e1b48)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[9]([Ljava.lang.String;@25b8a1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[10]([Ljava.lang.String;@cc907)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[11]([Ljava.lang.String;@cf84ee)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[12]([Ljava.lang.String;@4e3e0a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[13]([Ljava.lang.String;@10c1805)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[14]([Ljava.lang.String;@b03621)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[15]([Ljava.lang.String;@5da383)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[16]([Ljava.lang.String;@13f6912)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[17]([Ljava.lang.String;@1aee2e6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[18]([Ljava.lang.String;@18c1034)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[19]([Ljava.lang.String;@1079913)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[20]([Ljava.lang.String;@12e9931)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[21]([Ljava.lang.String;@aa3bff)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[22]([Ljava.lang.String;@ba70c2)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[23]([Ljava.lang.String;@19c8b72)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[24]([Ljava.lang.String;@176f537)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[25]([Ljava.lang.String;@1779ec4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[26]([Ljava.lang.String;@2471c4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[27]([Ljava.lang.String;@1fc637b)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[28]([Ljava.lang.String;@1b01ad4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[29]([Ljava.lang.String;@17ba277)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[30]([Ljava.lang.String;@1acfb7c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[31]([Ljava.lang.String;@4e30ca)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[32]([Ljava.lang.String;@1b62427)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[33]([Ljava.lang.String;@80ee4e)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[34]([Ljava.lang.String;@169a9ce)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[35]([Ljava.lang.String;@1dd8805)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[36]([Ljava.lang.String;@1a22baf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[37]([Ljava.lang.String;@1bcc160)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[38]([Ljava.lang.String;@1f4a8ea)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[39]([Ljava.lang.String;@6ca70)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[40]([Ljava.lang.String;@5f8c82)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[41]([Ljava.lang.String;@13449e9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[42]([Ljava.lang.String;@44a6d0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[43]([Ljava.lang.String;@13f3d0f)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[44]([Ljava.lang.String;@143dcab)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[45]([Ljava.lang.String;@7b4259)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[46]([Ljava.lang.String;@1fdf49d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[47]([Ljava.lang.String;@12777e8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[48]([Ljava.lang.String;@1d5a8d4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[49]([Ljava.lang.String;@14728ed)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[50]([Ljava.lang.String;@cf2908)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[51]([Ljava.lang.String;@eca256)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[52]([Ljava.lang.String;@1f2a30a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[53]([Ljava.lang.String;@1c99e16)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[54]([Ljava.lang.String;@291b48)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[55]([Ljava.lang.String;@12d8d7a)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[56]([Ljava.lang.String;@3b4eaf)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[57]([Ljava.lang.String;@617d2d)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[58]([Ljava.lang.String;@b52d71)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testBadTaggedArguments[59]([Ljava.lang.String;@1d57d0c)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[0]([Ljava.lang.String;@1608c76, TaggableArguments --tFullName:tumor gcs://my/tumor.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGetCommandLineTagged[1]([Ljava.lang.String;@1cf040f, TaggableArguments --tFullName:tumor,training=true,truth=false tumor.bam --tFullName:normal,training=false,truth=true normal.bam --tScalar:taggableArgScalar foo --scalarArg 17)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[0]([Ljava.lang.String;@14d6533, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@149f1db, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1f08991)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[1]([Ljava.lang.String;@abb371, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3f5c51, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1a41fc4)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[2]([Ljava.lang.String;@16e9f9, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1d1c324, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@342)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[3]([Ljava.lang.String;@1dfe0b6, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@15d4648, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@3aaeec)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[4]([Ljava.lang.String;@199542a, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1347cd4, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@34a969)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[5]([Ljava.lang.String;@1497640, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@132a083, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@f058d5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[6]([Ljava.lang.String;@8a7ad3, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@12d0f73, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1be9d92)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[7]([Ljava.lang.String;@10426e5, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@92b434, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@f8ded6)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[8]([Ljava.lang.String;@725cd2, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@62d2bc, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@c6af21)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[9]([Ljava.lang.String;@167d18c, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1b4178e, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@11ec1e8)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[10]([Ljava.lang.String;@dbfb62, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@5dcae8, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@b7bb89)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[11]([Ljava.lang.String;@5dcbfc, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@15391ca, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1f49ea5)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[12]([Ljava.lang.String;@539d26, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1337407, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1eeb0b0)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[13]([Ljava.lang.String;@11a6134, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1a987fc, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@1fed940)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[14]([Ljava.lang.String;@de266, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@6fd675, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@abe989)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[15]([Ljava.lang.String;@1b96eda, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@116ffd1, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@caae1)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[16]([Ljava.lang.String;@72147f, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@171c7de, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@bdb4ed)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) +Running Test: Test method testGoodTaggedArguments[17]([Ljava.lang.String;@6509e7, [Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@36e5d2, [[Lorg.broadinstitute.barclay.argparser.TaggedArgumentTest$KeyValuePair;@16f7ac9)(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTagCollectionArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testMixedTaggedExpansionFile(org.broadinstitute.barclay.argparser.TaggedArgumentTest) Running Test: Test method testTaggedScalarArgument(org.broadinstitute.barclay.argparser.TaggedArgumentTest) @@ -4381,6 +4416,7 @@ e f g, -1)(org.broadinstitute.barclay.utils.UtilsUnitTest) +Gradle Test Executor 1 finished executing tests. Running Test: Test method testWrapParagraph[16](a b c d e f g, a b c @@ -4389,14 +4425,14 @@ f g, -1000)(org.broadinstitute.barclay.utils.UtilsUnitTest) Results: SUCCESS (337 tests, 337 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.146 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/test-results/test +Finished generating test XML results (0.169 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.162 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/reports/tests/test -:test (Thread[#46,Task worker for ':',5,main]) completed. Took 9.373 secs. +Finished generating test html results (0.115 secs) into: /build/reproducible-path/barclay-5.0.0+dfsg/build/reports/tests/test +:test (Thread[#29,Daemon worker,5,main]) completed. Took 10.632 secs. -BUILD SUCCESSFUL in 37s +BUILD SUCCESSFUL in 41s 5 actionable tasks: 3 executed, 2 up-to-date - rm -fr -- /tmp/dh-xdg-rundir-2SbcURgo + rm -fr -- /tmp/dh-xdg-rundir-dpCMO6M_ make[1]: Leaving directory '/build/reproducible-path/barclay-5.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4406,8 +4442,8 @@ dh_auto_install --destdir=debian/libbarclay-java/ -O--buildsystem=gradle install -m0755 -d /build/reproducible-path/barclay-5.0.0\+dfsg/debian/libbarclay-java jh_installjavadoc -O--buildsystem=gradle -Duplicate specification "author|A=s" for option "A" -Duplicate specification "author|A=s" for option "A" +Duplicate specification "A" for option "A" +Duplicate specification "A" for option "A" dh_installdocs -O--buildsystem=gradle install -m0755 -d debian/libbarclay-java/usr/share/doc/libbarclay-java install -p -m0644 debian/copyright debian/libbarclay-java/usr/share/doc/libbarclay-java/copyright @@ -4424,14 +4460,14 @@ ln -s barclay-5.0.0.jar debian/libbarclay-java/usr/share/java/barclay.jar jh_classpath -O--buildsystem=gradle jh_manifest -plibbarclay-java "--classpath=/usr/share/java/commons-lang3.jar /usr/share/java/freemarker.jar /usr/share/java/gson.jar /usr/share/java/joptsimple.jar /usr/share/java/log4j-api.jar" debian/libbarclay-java/usr/share/java/barclay.jar -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" Duplicate specification "V:s" for option "V" Updating symlinked /build/reproducible-path/barclay-5.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-5.0.0.jar (via debian/libbarclay-java/usr/share/java/barclay.jar) Reading manifest from /build/reproducible-path/barclay-5.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-5.0.0.jar Updating manifest in /build/reproducible-path/barclay-5.0.0+dfsg/debian/libbarclay-java/usr/share/java/barclay-5.0.0.jar jh_manifest -O--buildsystem=gradle Duplicate specification "V:s" for option "V" -Duplicate specification "V:s" for option "V" +Duplicate specification "version|V" for option "V" find debian/libbarclay-java -name '*.jar' Found symlink usr/share/java/barclay.jar Found usr/share/java/barclay-5.0.0.jar @@ -4464,10 +4500,10 @@ rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar dh_link -plibbarclay-java /usr/share/javabarclay.jar usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar - rm -f debian/libbarclay-java/usr/share/java/barclay.jar - ln -s barclay-5.0.0.jar debian/libbarclay-java/usr/share/java/barclay.jar rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/5.0.0/barclay-5.0.0.jar + rm -f debian/libbarclay-java/usr/share/java/barclay.jar + ln -s barclay-5.0.0.jar debian/libbarclay-java/usr/share/java/barclay.jar install -m0755 -d debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian rm -f debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar ln -s ../../../../../java/barclay.jar debian/libbarclay-java/usr/share/maven-repo/org/broadinstitute/barclay/debian/barclay-debian.jar @@ -4521,12 +4557,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/17002/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/17002/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/11833 and its subdirectories -I: Current time: Tue Dec 3 17:05:19 -12 2024 -I: pbuilder-time-stamp: 1733288720 +I: removing directory /srv/workspace/pbuilder/17002 and its subdirectories +I: Current time: Wed Dec 4 19:09:07 +14 2024 +I: pbuilder-time-stamp: 1733288947