Diff of the two buildlogs: -- --- b1/build.log 2024-12-09 14:39:34.808158590 +0000 +++ b2/build.log 2024-12-09 14:41:04.068132366 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 9 02:34:27 -12 2024 -I: pbuilder-time-stamp: 1733754867 +I: Current time: Tue Dec 10 04:39:47 +14 2024 +I: pbuilder-time-stamp: 1733755187 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -33,52 +33,84 @@ dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/14698/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/5635/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 9 14:39 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/5635/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/5635/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='16c2385849084041bef029da18d58058' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='14698' - PS1='# ' - PS2='> ' + INVOCATION_ID=ff771e3263284659a93050659acabd17 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=5635 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1av54JOv/pbuilderrc_iavt --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1av54JOv/b1 --logfile b1/build.log ea-utils_1.1.2+dfsg-9.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1av54JOv/pbuilderrc_Zudq --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1av54JOv/b2 --logfile b2/build.log ea-utils_1.1.2+dfsg-9.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4a 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/14698/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/5635/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -157,7 +189,7 @@ Get: 33 http://deb.debian.org/debian trixie/main armhf libgsl28 armhf 2.8+dfsg-5 [812 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libgsl-dev armhf 2.8+dfsg-5 [1030 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libsparsehash-dev all 2.0.3-2 [76.8 kB] -Fetched 22.1 MB in 2s (10.1 MB/s) +Fetched 22.1 MB in 1s (43.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19682 files and directories currently installed.) @@ -312,7 +344,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes +I: user script /srv/workspace/pbuilder/5635/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/5635/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable @@ -322,7 +358,7 @@ debian/rules clean dh clean dh_auto_clean - make -j3 clean + make -j4 clean make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' @@ -333,11 +369,13 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j3 "INSTALL=install --strip-program=true" + make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-join fastq-join.c -Wl,-z,relro -Wl,-z,now +g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -353,6 +391,11 @@ fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ +fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': +fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] + 284 | register int c = getc (stream); + | ^ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ @@ -372,7 +415,8 @@ fastq-multx.c:554:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ -g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now +g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-mcf.c: In function 'int main(int, char**)': fastq-mcf.c:633:65: warning: too many arguments for format [-Wformat-extra-args] @@ -390,16 +434,15 @@ 1657 | b=atoi(strchr(optarg, ',')+1); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now +g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ +g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); @@ -413,6 +456,26 @@ /usr/include/c++/14/bits/vector.tcc:700:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ +tidx/tidx-lib.cpp: In member function 'void tidx::dump(FILE*)': +tidx/tidx-lib.cpp:267:40: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 267 | fprintf(fh, "%s\t%d\t%d\t%ld\t%ld\n", it->first.c_str(), van[i].beg, van[i].end, van[i].pos.size(), van[i].pos[0]); + | ~~^ ~~~~~~~~~~~~~~~~~ + | | | + | long int std::vector::size_type {aka unsigned int} + | %d +tidx/tidx-lib.cpp: In member function 'void tidx::build(const char*, const char*, int, int, int, int, char, bool)': +tidx/tidx-lib.cpp:337:49: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 337 | if (debug) fprintf(stderr, "frag %s : %ld ->", it->first.c_str(), van.size()); + | ~~^ ~~~~~~~~~~ + | | | + | long int std::vector::size_type {aka unsigned int} + | %d +tidx/tidx-lib.cpp:405:40: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] + 405 | if (debug) fprintf(stderr, " %ld\n", van.size()); + | ~~^ ~~~~~~~~~~ + | | | + | long int std::vector::size_type {aka unsigned int} + | %d sam-stats.cpp: In member function 'int ibucket::operator[](int) const': sam-stats.cpp:140:9: warning: control reaches end of non-void function [-Wreturn-type] 140 | } @@ -431,8 +494,6 @@ 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 -g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, @@ -461,37 +522,13 @@ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': -fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] - 284 | register int c = getc (stream); - | ^ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/c++/14/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = countPerCycle; _Alloc = std::allocator]', inlined from 'int main(int, char**)' at fastq-stats.cpp:282:18: /usr/include/c++/14/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -tidx/tidx-lib.cpp: In member function 'void tidx::dump(FILE*)': -tidx/tidx-lib.cpp:267:40: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 267 | fprintf(fh, "%s\t%d\t%d\t%ld\t%ld\n", it->first.c_str(), van[i].beg, van[i].end, van[i].pos.size(), van[i].pos[0]); - | ~~^ ~~~~~~~~~~~~~~~~~ - | | | - | long int std::vector::size_type {aka unsigned int} - | %d -tidx/tidx-lib.cpp: In member function 'void tidx::build(const char*, const char*, int, int, int, int, char, bool)': -tidx/tidx-lib.cpp:337:49: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 337 | if (debug) fprintf(stderr, "frag %s : %ld ->", it->first.c_str(), van.size()); - | ~~^ ~~~~~~~~~~ - | | | - | long int std::vector::size_type {aka unsigned int} - | %d -tidx/tidx-lib.cpp:405:40: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] - 405 | if (debug) fprintf(stderr, " %ld\n", van.size()); - | ~~^ ~~~~~~~~~~ - | | | - | long int std::vector::size_type {aka unsigned int} - | %d +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In function 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]', inlined from 'int main(int, char**)' at sam-stats.cpp:638:19: /usr/include/c++/14/bits/stl_algo.h:4771:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 @@ -507,7 +544,6 @@ /usr/include/c++/14/bits/stl_algo.h:4771:18: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 4771 | std::__sort(__first, __last, __gnu_cxx::__ops::__iter_less_iter()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ varcall.cpp: In member function 'vfinal& vfinal::operator=(const vfinal&)': varcall.cpp:128:122: warning: no return statement in function returning non-void [-Wreturn-type] 128 | vfinal & operator=(vfinal const&x) {max_idl_seq=x.max_idl_seq; max_idl_cnt=x.max_idl_cnt; padj=x.padj; pcall=x.pcall;} @@ -571,7 +607,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' - make -j3 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr + make -j4 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mkdir -p /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper @@ -606,17 +642,17 @@ diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged -dpkg-shlibdeps: warning: debian/ea-utils/usr/bin/varcall contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin -dpkg-shlibdeps: warning: debian/ea-utils/usr/bin/fastq-stats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/ea-utils/usr/bin/fastq-mcf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ea-utils/usr/bin/fastq-stats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin +dpkg-shlibdeps: warning: debian/ea-utils/usr/bin/varcall contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'ea-utils-dbgsym' in '../ea-utils-dbgsym_1.1.2+dfsg-9_armhf.deb'. dpkg-deb: building package 'ea-utils' in '../ea-utils_1.1.2+dfsg-9_armhf.deb'. +dpkg-deb: building package 'ea-utils-dbgsym' in '../ea-utils-dbgsym_1.1.2+dfsg-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../ea-utils_1.1.2+dfsg-9_armhf.buildinfo dpkg-genchanges --build=binary -O../ea-utils_1.1.2+dfsg-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -624,12 +660,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/5635/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/5635/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/14698 and its subdirectories -I: Current time: Mon Dec 9 02:39:30 -12 2024 -I: pbuilder-time-stamp: 1733755170 +I: removing directory /srv/workspace/pbuilder/5635 and its subdirectories +I: Current time: Tue Dec 10 04:41:00 +14 2024 +I: pbuilder-time-stamp: 1733755260