Diff of the two buildlogs: -- --- b1/build.log 2025-01-25 12:17:42.930084909 +0000 +++ b2/build.log 2025-01-25 12:28:25.617071689 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jan 25 00:10:24 -12 2025 -I: pbuilder-time-stamp: 1737807024 +I: Current time: Sun Jan 26 02:18:00 +14 2025 +I: pbuilder-time-stamp: 1737807480 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying adjust-shenwei356-kmers.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/32609/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/26028/tmp/hooks/D01_modify_environment starting +debug: Running on cbxi4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 25 12:18 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/26028/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/26028/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='91053f8566d54b00a0c42cc6c38af77d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='32609' - PS1='# ' - PS2='> ' + INVOCATION_ID=0c46f3dbb62e44af93d84b85c8b1cd1d + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=26028 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OZyEw31D/pbuilderrc_9BMs --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OZyEw31D/b1 --logfile b1/build.log golang-github-shenwei356-bio_0.13.3-1.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OZyEw31D/pbuilderrc_985c --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OZyEw31D/b2 --logfile b2/build.log golang-github-shenwei356-bio_0.13.3-1.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64b 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/32609/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/26028/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -219,7 +251,7 @@ Get: 92 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-util-dev all 0.5.2-1 [18.4 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf golang-github-will-rowe-nthash-dev all 0.4.0-1 [5644 B] Get: 94 http://deb.debian.org/debian trixie/main armhf golang-github-zeebo-wyhash-dev all 0.0.1-3 [23.5 kB] -Fetched 107 MB in 8s (14.0 MB/s) +Fetched 107 MB in 9s (12.2 MB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19569 files and directories currently installed.) @@ -536,8 +568,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Jan 25 12:13:24 UTC 2025. -Universal Time is now: Sat Jan 25 12:13:24 UTC 2025. +Local time is now: Sat Jan 25 12:20:53 UTC 2025. +Universal Time is now: Sat Jan 25 12:20:53 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up golang-github-cespare-xxhash-dev (2.3.0-1) ... @@ -616,7 +648,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.3-1_source.changes +I: user script /srv/workspace/pbuilder/26028/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/26028/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.3-1_source.changes dpkg-buildpackage: info: source package golang-github-shenwei356-bio dpkg-buildpackage: info: source version 0.13.3-1 dpkg-buildpackage: info: source distribution unstable @@ -634,18 +670,18 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 3 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util -internal/goarch + cd _build && go install -trimpath -v -p 4 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util +internal/byteorder internal/unsafeheader internal/cpu -internal/byteorder -internal/abi -internal/chacha8rand -internal/bytealg +internal/goarch internal/coverage/rtcov +internal/abi internal/godebugs +internal/chacha8rand internal/goexperiment internal/goos +internal/bytealg internal/profilerecord internal/runtime/atomic internal/runtime/syscall @@ -653,47 +689,48 @@ runtime/internal/math runtime/internal/sys cmp -internal/runtime/exithook internal/itoa internal/race math/bits unicode/utf8 +internal/runtime/exithook sync/atomic math unicode -runtime internal/asan internal/msan github.com/dsnet/compress/bzip2/internal/sais github.com/dsnet/compress/internal +runtime crypto/internal/alias crypto/internal/boring/sig -github.com/klauspost/compress log/internal github.com/ulikunitz/xz/internal/hash container/list +github.com/klauspost/compress unicode/utf16 vendor/golang.org/x/crypto/cryptobyte/asn1 vendor/golang.org/x/crypto/internal/alias internal/nettrace github.com/elliotwutingfeng/asciiset -iter +crypto/subtle internal/reflectlite +iter sync slices -crypto/subtle internal/weak maps internal/testlog internal/bisect internal/singleflight +runtime/cgo +internal/godebug errors sort strconv io internal/oserror path -internal/godebug syscall bytes reflect @@ -701,168 +738,167 @@ bufio github.com/dsnet/compress/internal/errors github.com/dsnet/compress -hash time internal/syscall/unix internal/syscall/execenv +hash hash/crc32 crypto crypto/cipher -crypto/internal/boring crypto/internal/randutil math/rand +crypto/internal/boring crypto/sha256 -io/fs -internal/poll -internal/filepathlite -internal/fmtsort -encoding/binary -context -os hash/crc64 crypto/aes -github.com/cespare/xxhash -github.com/klauspost/compress/internal/snapref crypto/des crypto/internal/edwards25519/field crypto/internal/nistec/fiat crypto/sha512 crypto/internal/edwards25519 -fmt -path/filepath +io/fs +internal/filepathlite +internal/fmtsort +internal/poll +encoding/binary +context crypto/hmac +vendor/golang.org/x/crypto/hkdf +crypto/md5 +os +github.com/cespare/xxhash +github.com/klauspost/compress/internal/snapref vendor/golang.org/x/crypto/chacha20 vendor/golang.org/x/crypto/internal/poly1305 +crypto/rc4 +vendor/golang.org/x/crypto/chacha20poly1305 +crypto/sha1 +encoding/base64 +vendor/golang.org/x/net/dns/dnsmessage +encoding/pem +math/rand/v2 +fmt +path/filepath +crypto/internal/nistec +vendor/golang.org/x/sys/cpu +internal/concurrent +vendor/golang.org/x/crypto/sha3 +unique +net/netip +vendor/golang.org/x/text/transform +net/http/internal/ascii +os/exec +crypto/ecdh github.com/dsnet/compress/internal/prefix math/big -github.com/dsnet/compress/bzip2 encoding/hex github.com/klauspost/compress/fse +github.com/dsnet/compress/bzip2 log -github.com/klauspost/compress/huff0 -crypto/rand runtime/debug +github.com/klauspost/compress/huff0 compress/flate github.com/ulikunitz/xz/internal/xlog github.com/ulikunitz/xz/lzma -github.com/klauspost/compress/zstd github.com/klauspost/compress/flate -github.com/ulikunitz/xz compress/gzip -crypto/internal/nistec +net +crypto/rand +github.com/klauspost/compress/zstd +github.com/ulikunitz/xz +crypto/elliptic github.com/klauspost/pgzip crypto/internal/bigmod crypto/internal/boring/bbig encoding/asn1 -crypto/ecdh -crypto/elliptic crypto/ed25519 -vendor/golang.org/x/crypto/chacha20poly1305 -vendor/golang.org/x/crypto/hkdf -vendor/golang.org/x/crypto/cryptobyte -vendor/golang.org/x/sys/cpu crypto/internal/hpke -vendor/golang.org/x/crypto/sha3 -crypto/md5 crypto/internal/mlkem768 -crypto/ecdsa -crypto/rc4 +vendor/golang.org/x/crypto/cryptobyte crypto/rsa -crypto/sha1 crypto/dsa +crypto/ecdsa crypto/x509/pkix -encoding/base64 -vendor/golang.org/x/net/dns/dnsmessage -math/rand/v2 -encoding/pem -internal/concurrent -runtime/cgo -unique -net/netip net/url -vendor/golang.org/x/text/transform vendor/golang.org/x/text/unicode/bidi -vendor/golang.org/x/text/unicode/norm -vendor/golang.org/x/text/secure/bidirule vendor/golang.org/x/net/http2/hpack +vendor/golang.org/x/text/unicode/norm mime -vendor/golang.org/x/net/idna +vendor/golang.org/x/text/secure/bidirule mime/quotedprintable net/http/internal -net/http/internal/ascii -os/exec +os/user github.com/twotwotwo/sorts github.com/twotwotwo/sorts/sortutil +vendor/golang.org/x/net/idna github.com/shenwei356/util/byteutil github.com/shenwei356/bio/seq golang.org/x/sys/unix regexp/syntax -regexp github.com/will-rowe/nthash github.com/zeebo/wyhash -github.com/edsrzf/mmap-go -github.com/shenwei356/bio/sketches -github.com/shenwei356/bio/seqio/fai -github.com/shenwei356/bio/util -os/user -net -vendor/golang.org/x/net/http/httpproxy -net/textproto +regexp crypto/x509 +net/textproto +vendor/golang.org/x/net/http/httpproxy vendor/golang.org/x/net/http/httpguts mime/multipart +github.com/shenwei356/bio/sketches +github.com/shenwei356/bio/util +github.com/edsrzf/mmap-go crypto/tls +github.com/shenwei356/bio/seqio/fai net/http/httptrace net/http github.com/shenwei356/xopen +github.com/shenwei356/breader github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/seqio/fastx -github.com/shenwei356/breader github.com/shenwei356/bio/featio/gtf dh_auto_test -O--builddirectory=_build -O--buildsystem=golang - cd _build && go test -vet=off -v -p 3 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util + cd _build && go test -vet=off -v -p 4 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util === RUN TestGTF -{140 Twinscan inter 5141 8522 0x1832378 []} -{140 Twinscan inter_CNS 8523 9711 0x1832388 []} -{140 Twinscan inter 9712 13182 0x1832390 []} -{140 Twinscan 3UTR 65149 65487 0x1832398 []} -{140 Twinscan 3UTR 66823 66992 0x18323a0 []} -{140 Twinscan stop_codon 66993 66995 0x18323a8 0x1810248 []} -{140 Twinscan CDS 66996 66999 0x18323b0 0x181024c []} -{140 Twinscan intron_CNS 70103 70151 0x18323b8 []} -{140 Twinscan CDS 70207 70294 0x18323c0 0x18102a0 []} -{140 Twinscan CDS 71696 71807 0x18323c8 0x18102a4 []} -{140 Twinscan start_codon 71805 71806 0x18323d0 0x18102a8 []} -{140 Twinscan start_codon 73222 73222 0x18323d8 0x18102ac []} -{140 Twinscan CDS 73222 73222 0x18323e0 0x18102b0 []} -{140 Twinscan 5UTR 73223 73504 0x18323e8 []} ---- PASS: TestGTF (0.01s) +{140 Twinscan inter 5141 8522 0x1032378 []} +{140 Twinscan inter_CNS 8523 9711 0x1032388 []} +{140 Twinscan inter 9712 13182 0x1032390 []} +{140 Twinscan 3UTR 65149 65487 0x1032398 []} +{140 Twinscan 3UTR 66823 66992 0x10323a0 []} +{140 Twinscan stop_codon 66993 66995 0x10323a8 0x1010258 []} +{140 Twinscan CDS 66996 66999 0x10323b0 0x101025c []} +{140 Twinscan intron_CNS 70103 70151 0x10323b8 []} +{140 Twinscan CDS 70207 70294 0x10323c0 0x10102b0 []} +{140 Twinscan CDS 71696 71807 0x10323c8 0x10102b4 []} +{140 Twinscan start_codon 71805 71806 0x10323d0 0x10102b8 []} +{140 Twinscan start_codon 73222 73222 0x10323d8 0x10102bc []} +{140 Twinscan CDS 73222 73222 0x10323e0 0x10102c0 []} +{140 Twinscan 5UTR 73223 73504 0x10323e8 []} +--- PASS: TestGTF (0.00s) === RUN TestGTF2 -{381 Twinscan exon 150 200 0x1832448 []} -{381 Twinscan exon 300 401 0x1832458 []} -{381 Twinscan CDS 380 401 0x1832460 0x18102dc []} -{381 Twinscan exon 501 650 0x1832468 []} -{381 Twinscan CDS 501 650 0x1832470 0x1810320 []} -{381 Twinscan exon 700 800 0x1832478 []} -{381 Twinscan CDS 700 707 0x1832480 0x1810324 []} -{381 Twinscan exon 900 1000 0x1832488 []} -{381 Twinscan start_codon 380 382 0x1832490 0x1810328 []} -{381 Twinscan stop_codon 708 710 0x1832498 0x181032c []} ---- PASS: TestGTF2 (0.03s) +{381 Twinscan exon 150 200 0x1032448 []} +{381 Twinscan exon 300 401 0x1032458 []} +{381 Twinscan CDS 380 401 0x1032460 0x10102ec []} +{381 Twinscan exon 501 650 0x1032468 []} +{381 Twinscan CDS 501 650 0x1032470 0x1010330 []} +{381 Twinscan exon 700 800 0x1032478 []} +{381 Twinscan CDS 700 707 0x1032480 0x1010334 []} +{381 Twinscan exon 900 1000 0x1032488 []} +{381 Twinscan start_codon 380 382 0x1032490 0x1010338 []} +{381 Twinscan stop_codon 708 710 0x1032498 0x101033c []} +--- PASS: TestGTF2 (0.01s) === RUN TestGTF3 -{NC_002516.2 genbank gene 6261828 6263564 0x18324f8 0x181035c []} -{NC_002516.2 genbank CDS 6261828 6263564 0x1832508 0x1810390 []} -{NC_002516.2 genbank gene 6263805 6264212 0x1832510 0x1810394 []} -{NC_002516.2 genbank CDS 6263805 6264212 0x1832518 0x1810398 []} -{NC_002516.2 genbank gene 6264227 6264361 0x1832520 0x181039c []} -{NC_002516.2 genbank CDS 6264227 6264361 0x1832528 0x18103a0 []} ---- PASS: TestGTF3 (0.03s) +{NC_002516.2 genbank gene 6261828 6263564 0x11a2058 0x119c03c []} +{NC_002516.2 genbank CDS 6261828 6263564 0x11a2068 0x119c060 []} +{NC_002516.2 genbank gene 6263805 6264212 0x11a2070 0x119c064 []} +{NC_002516.2 genbank CDS 6263805 6264212 0x11a2078 0x119c068 []} +{NC_002516.2 genbank gene 6264227 6264361 0x11a2080 0x119c06c []} +{NC_002516.2 genbank CDS 6264227 6264361 0x11a2088 0x119c070 []} +--- PASS: TestGTF3 (0.00s) PASS -ok github.com/shenwei356/bio/featio/gtf 0.088s +ok github.com/shenwei356/bio/featio/gtf 0.055s === RUN TestAlphabet --- PASS: TestAlphabet (0.00s) === RUN TestAlphabet2 ---- PASS: TestAlphabet2 (0.00s) +--- PASS: TestAlphabet2 (0.01s) === RUN TestBases2AmbBase --- PASS: TestBases2AmbBase (0.00s) === RUN TestAmbBase2Bases @@ -882,39 +918,39 @@ === RUN TestSubSeqInplace --- PASS: TestSubSeqInplace (0.00s) PASS -ok github.com/shenwei356/bio/seq 0.036s +ok github.com/shenwei356/bio/seq 0.219s === RUN TestFastaReader ---- PASS: TestFastaReader (0.35s) +--- PASS: TestFastaReader (0.03s) === RUN TestFastaReaderNotMapWholeFile ---- PASS: TestFastaReaderNotMapWholeFile (0.00s) +--- PASS: TestFastaReaderNotMapWholeFile (0.15s) === RUN TestFastaReader2NotMapWholeFile ---- PASS: TestFastaReader2NotMapWholeFile (0.05s) +--- PASS: TestFastaReader2NotMapWholeFile (0.24s) === RUN TestFastaReader2 ---- PASS: TestFastaReader2 (0.03s) +--- PASS: TestFastaReader2 (0.20s) PASS -ok github.com/shenwei356/bio/seqio/fai 0.666s +ok github.com/shenwei356/bio/seqio/fai 0.974s === RUN TestFastaReader2 ---- PASS: TestFastaReader2 (0.33s) +--- PASS: TestFastaReader2 (0.02s) === RUN TestFastaReader3 ---- PASS: TestFastaReader3 (0.01s) +--- PASS: TestFastaReader3 (0.18s) === RUN TestFastqReadern ---- PASS: TestFastqReadern (0.01s) +--- PASS: TestFastqReadern (0.12s) === RUN TestFastaReader ---- PASS: TestFastaReader (0.03s) +--- PASS: TestFastaReader (0.33s) === RUN TestFastqReader ---- PASS: TestFastqReader (0.01s) +--- PASS: TestFastqReader (0.18s) === RUN TestFastqReader2 ---- PASS: TestFastqReader2 (0.14s) +--- PASS: TestFastqReader2 (0.17s) === RUN TestFastqReader3 ---- PASS: TestFastqReader3 (0.11s) +--- PASS: TestFastqReader3 (0.26s) === RUN TestBlankFile ---- PASS: TestBlankFile (0.02s) +--- PASS: TestBlankFile (0.21s) === RUN TestBlankFile2 ---- PASS: TestBlankFile2 (0.07s) +--- PASS: TestBlankFile2 (0.10s) === RUN TestEmptyFile ---- PASS: TestEmptyFile (0.01s) +--- PASS: TestEmptyFile (0.13s) PASS -ok github.com/shenwei356/bio/seqio/fastx 0.951s +ok github.com/shenwei356/bio/seqio/fastx 2.017s === RUN TestProteinIterator --- PASS: TestProteinIterator (0.00s) === RUN TestKmerIterator @@ -930,15 +966,15 @@ === RUN TestSyncmer --- PASS: TestSyncmer (0.00s) PASS -ok github.com/shenwei356/bio/sketches 0.147s +ok github.com/shenwei356/bio/sketches 0.264s === RUN TestPackTwoTaxids --- PASS: TestPackTwoTaxids (0.00s) PASS -ok github.com/shenwei356/bio/taxdump 0.011s +ok github.com/shenwei356/bio/taxdump 0.073s === RUN Test --- PASS: Test (0.00s) PASS -ok github.com/shenwei356/bio/util 0.009s +ok github.com/shenwei356/bio/util 0.033s create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang @@ -970,12 +1006,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/26028/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/26028/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/32609 and its subdirectories -I: Current time: Sat Jan 25 00:17:38 -12 2025 -I: pbuilder-time-stamp: 1737807458 +I: removing directory /srv/workspace/pbuilder/26028 and its subdirectories +I: Current time: Sun Jan 26 02:28:21 +14 2025 +I: pbuilder-time-stamp: 1737808101