Diff of the two buildlogs: -- --- b1/build.log 2025-01-13 16:04:25.518191076 +0000 +++ b2/build.log 2025-01-13 16:13:57.972076202 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 13 03:50:51 -12 2025 -I: pbuilder-time-stamp: 1736783451 +I: Current time: Tue Jan 14 06:04:37 +14 2025 +I: pbuilder-time-stamp: 1736784277 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/24523/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6443/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 13 16:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6443/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6443/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='6feaf6b3148f46208f2c4219da41a68a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='24523' - PS1='# ' - PS2='> ' + INVOCATION_ID=a7ddad0c16bf45a1ad35bd35956d86e1 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6443 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d8GKUtYa/pbuilderrc_5Jnr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d8GKUtYa/b1 --logfile b1/build.log python-csb_1.2.5+dfsg-10.dsc' - SUDO_GID='112' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d8GKUtYa/pbuilderrc_1dMr --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d8GKUtYa/b2 --logfile b2/build.log python-csb_1.2.5+dfsg-10.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32b 6.1.0-29-armmp-lpae #1 SMP Debian 6.1.123-1 (2025-01-02) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-29-arm64 #1 SMP Debian 6.1.123-1 (2025-01-02) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/24523/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/6443/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -269,7 +301,7 @@ Get: 145 http://deb.debian.org/debian trixie/main armhf python3-pyparsing all 3.1.2-1 [146 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf python3-matplotlib armhf 3.8.3-3+b1 [5579 kB] -Fetched 94.8 MB in 8s (11.9 MB/s) +Fetched 94.8 MB in 14s (6644 kB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19567 files and directories currently installed.) @@ -761,8 +793,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jan 13 15:52:23 UTC 2025. -Universal Time is now: Mon Jan 13 15:52:23 UTC 2025. +Local time is now: Mon Jan 13 16:05:55 UTC 2025. +Universal Time is now: Mon Jan 13 16:05:55 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -891,7 +923,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes +I: user script /srv/workspace/pbuilder/6443/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/6443/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-csb_1.2.5+dfsg-10_source.changes dpkg-buildpackage: info: source package python-csb dpkg-buildpackage: info: source version 1.2.5+dfsg-10 dpkg-buildpackage: info: source distribution unstable @@ -952,147 +988,147 @@ running build running build_py creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb -copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio -copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio +copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics +copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io -copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio +copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io +copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps -copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps +copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech -copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech +copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric -copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric -copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers +copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils +copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure +copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm +copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm +copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io +copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils -copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils +copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments -copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments +copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence -copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure -copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers -copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc +copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio -copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io -copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio +copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric +copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric +copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io +copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric -copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric -copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf +copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf +copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers +copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils +copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io -copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure +copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils -copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io +copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure -copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred -copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif +copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs -copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta +copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck -copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans -copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs +copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif -copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta -copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans +copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck +copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf -copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf -copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers -copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers running egg_info creating csb.egg-info writing csb.egg-info/PKG-INFO @@ -1237,147 +1273,147 @@ running build running build_py creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb -copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio -copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio +copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics -copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics +copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics -copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics +copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io -copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io -copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io -copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio +copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric +copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric +copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io +copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io +copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io +copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps -copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps -copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps -copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps -copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps +copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps +copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps -copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps +copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps +copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps +copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech -copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech +copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric -copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric -copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf +copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers +copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc +copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils +copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure +copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm +copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm +copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io +copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io +copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io +copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io +copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io +copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io +copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io +copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm -copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm -copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils -copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils +copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments -copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments +copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence -copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure -copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf -copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers -copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc -copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc +copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio -copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics -copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics +copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io -copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio +copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric +copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric +copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io +copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech -copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech +copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric -copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric -copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf +copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf +copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers +copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils +copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io -copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure +copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils -copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io +copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure -copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred -copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif +copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs -copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred +copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta +copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck -copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans -copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs +copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif -copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta -copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans +copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans +creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck +copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf -copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf -copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers -copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers running egg_info writing csb.egg-info/PKG-INFO writing dependency_links to csb.egg-info/dependency_links.txt @@ -1544,6 +1580,16 @@ /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' """ :530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' + re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' + re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' + re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' + re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' + re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' @@ -1564,18 +1610,189 @@ g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' - re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' - re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' - re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' - re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' - re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] +testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' +testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok +testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok +testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok +testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok +testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok +testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok +testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok +testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok +testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok +testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok +testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok +testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok +testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok +testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) +The posterior of a gaussian scale mixture with gamma prior ... ok +testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) +The posterior of a gaussian scale mixture with gamma prior ... ok +testGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP) +The posterior of a gaussian scale mixture with gamma prior ... ok +testInvGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma) +The posterior of a gaussian scale mixture with gamma prior ... ok +testInvGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP) +The posterior of a gaussian scale mixture with gamma prior ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok +testParameterValidation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation) +@see: [CSB 0000132] ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok +testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok +testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok +testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok +testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok +testConstrucor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok +testFindBaseParameter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok +testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok +testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok +testAssignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok +testParameterChaining (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok +testProperties (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok +testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok +testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok +testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok +testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok +testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok +testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok +testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok +testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok +testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok +testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok +testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok +testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. + initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. + momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), +ok +testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok +testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok +testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' +testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok +testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok +testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok +testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' +testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok +testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok +testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok +testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok +testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok +testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok +testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok +testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok +testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok +testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok +testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok +testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok +testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR +testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR +testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR +testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok +testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok +testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok +testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok +testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok +testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok +testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok +testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok +testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok +testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok +testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok +testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok +testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok +testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok +testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok +testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok +testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) +@see: [CSB 0000058] ... ok +testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok +testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok +testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok +testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok +testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok +testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok +testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok +testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok +testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok +testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok +testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok +testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok +testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok +testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok +testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok +testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok +testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok +testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok +testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok @@ -1633,27 +1850,137 @@ testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> - content = open(filename).read() +testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) +@see: [CSB 0000122] ... ok +testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) +@see: [CSB 0000030] ... ok +testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) +@see: [CSB 0000029] ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) +Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' +testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> + return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok -testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) -@see: [CSB 0000056] ... ok -testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp77fts2si' mode='r' encoding='UTF-8'> - break +testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok +testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok +testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok +testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok +testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok +testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok +testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok +testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok +testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok +testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok +testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok +testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok +testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok +testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok +testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok +testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok +testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok +testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok +testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok +testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok +testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok +testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok +testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok +testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok +testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok +testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok +testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmps8jm5zw1' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok -testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok -testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpp69bph9f' mode='r' encoding='UTF-8'> - generated = open(tmp.name).read() +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyzmhsrfw' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok +testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok +testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok +testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok +testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok +testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok +testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok +testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok +testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok +testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok +testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok +testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok +testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok +testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok +testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok +testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok +testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok +testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok +testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok +testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok +testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok +testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok +testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok +testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok +testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) @see: [CSB 0000067] ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok @@ -1731,92 +2058,48 @@ for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok -testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok -testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok -testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok -testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead - array = numpy.fromstring(map_data, numpy.float32, count) -ok -testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok -testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok -testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok -testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok -testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok -testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok -testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) -Test creating an empty L{Clans} instance. ... ok -testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok -testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok -testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok -testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok -testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok -testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok -testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok -testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> - self._clans_instance.filename)).read().split('\n', 1)[1] +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> + content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok -testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok -testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) -Test parsing of a small dummy file with known values ... ok -testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) -Test whether the premature (before parsing) access to clans_instance is ... ok -testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok -testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok -testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok -testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok -testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok +testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) +@see: [CSB 0000056] ... ok +testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmppzlerljs' mode='r' encoding='UTF-8'> + break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok +testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok +testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) +@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwlhc3d4p' mode='r' encoding='UTF-8'> + generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpc_2lo4rz' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptcxrdn_3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprlbeej7s' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8kzcbp2g' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0rx0450w' mode='r' encoding='UTF-8'> +testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgswutv99' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpa8mof8ce' mode='r' encoding='UTF-8'> +testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_5wud8hl' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnc2pnohx' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpg6i4z_cs' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzqin6q34' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcbgb3dob' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1828,11 +2111,11 @@ testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm1x37diy' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpd_ix1ve9' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmqrck62v' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmportd37an' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -1846,64 +2129,70 @@ testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok -testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok -testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok -testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok -testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok -testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok -testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok -testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok -testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok -testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok -testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok -testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok -testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok -testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok -testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok -testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok -testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok -testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok -testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok -testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok -testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok -testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok -testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok -testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok -testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) -@see: [CSB 0000058] ... ok -testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok -testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok -testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok -testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok -testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok -testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok -testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok -testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok -testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok -testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok -testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok -testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok -testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok -testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok -testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok -testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok -testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok -testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok -testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead + array = numpy.fromstring(map_data, numpy.float32, count) +ok +testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok +testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok +testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok +testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok +testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok +testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok +testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok +testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok +testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok +testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) +Test creating an empty L{Clans} instance. ... ok +testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok +testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok +testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok +testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok +testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok +testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok +testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok +testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> + self._clans_instance.filename)).read().split('\n', 1)[1] +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok +testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok +testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) +Test parsing of a small dummy file with known values ... ok +testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) +Test whether the premature (before parsing) access to clans_instance is ... ok +testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok +testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok +testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok +testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok +testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... ok testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok @@ -1936,7 +2225,7 @@ testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp46tb6nwd' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp8ozgq7n2' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2010,10 +2299,10 @@ testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpb31iomdo' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpi2821htw' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptqh2yaqw' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpdyr2tzx5' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2029,10 +2318,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7dmdcz67' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6j58jbld' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplcigmalj' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp497ci75x' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2048,10 +2337,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpi7kt5seg' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpx6beh1xo' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1qa1088f' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5k_3g2cw' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2078,10 +2367,10 @@ testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp171ksmlk' mode='r' encoding='UTF-8'> +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmjkdqhnh' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpz6smdpni' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnfrtd6tg' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2106,223 +2395,30 @@ testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok -testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) -@see: [CSB 0000122] ... ok -testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) -@see: [CSB 0000030] ... ok -testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) -@see: [CSB 0000029] ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) -Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' -testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> - return csb.io.Pickle.load(open(file, 'rb')) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok -testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok -testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok -testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok -testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok -testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok -testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok -testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok -testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok -testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok -testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok -testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok -testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok -testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok -testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok -testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok -testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok -testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok -testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok -testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok -testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok -testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok -testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok -testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok -testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok -testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok -testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpx6jnoas5' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprwe2wc_r' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok -testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok -testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok -testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok -testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok -testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok -testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok -testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok -testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok -testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok -testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok -testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok -testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok -testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' -testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok -testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok -testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok -testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) -The posterior of a gaussian scale mixture with gamma prior ... ok -testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) -The posterior of a gaussian scale mixture with gamma prior ... ok -testGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP) -The posterior of a gaussian scale mixture with gamma prior ... ok -testInvGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma) -The posterior of a gaussian scale mixture with gamma prior ... ok -testInvGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP) -The posterior of a gaussian scale mixture with gamma prior ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok -testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok -testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok -testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok -testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok -testConstrucor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok -testFindBaseParameter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok -testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok -testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok -testAssignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok -testParameterChaining (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok -testProperties (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok -testParameterValidation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation) -@see: [CSB 0000132] ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok -testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok -testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok -testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok -testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok -testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok -testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok -testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok -testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok -testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok -testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok -testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok -testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. - initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. - momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), -ok -testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok -testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok -testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' -testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok -testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok -testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok -testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' -testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok -testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok -testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok -testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok -testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok -testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok -testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok -testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok -testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok -testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok -testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok -testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok -testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR -testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR -testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR -testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpw97pue3n' mode='r' encoding='UTF-8'> +testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok +testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' +testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' +testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) +r526 ... ok +testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok +testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok +testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok +testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok +testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok +testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok +testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok +testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok +testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok +testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok +testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok +testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok +testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok +testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpipkr_zvz' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2339,15 +2435,15 @@ testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5zbek4ls' mode='r' encoding='UTF-8'> +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpn91prmg9' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwtmpuwgg' mode='r' encoding='UTF-8'> +testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_wxn892l' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzfq5rkwu' mode='r' encoding='UTF-8'> +testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpk73x4po2' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2363,7 +2459,7 @@ testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpes271mc8' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6ayrrlsz' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2378,78 +2474,18 @@ testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp89svxtia' mode='r' encoding='UTF-8'> +testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpalakkkwr' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok -testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok -testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok -testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok -testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok -testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok -testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok -testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok -testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok -testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok -testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok -testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok -testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok -testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok -testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok -testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok -testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok -testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' -testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' -testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) -r526 ... ok -testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok -testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok -testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok -testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok -testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok -testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok -testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok -testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok -testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok -testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok -testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok -testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok -testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok ====================================================================== ERROR: testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) @@ -2509,15 +2545,6 @@ AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'? ====================================================================== -FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ----------------------------------------------------------------------- -Traceback (most recent call last): - File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit - with self.assertRaises(RuntimeError): - ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^ -AssertionError: RuntimeError not raised - -====================================================================== FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ---------------------------------------------------------------------- Traceback (most recent call last): @@ -2526,8 +2553,17 @@ ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^ AssertionError: True is not false +====================================================================== +FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ---------------------------------------------------------------------- -Ran 697 tests in 252.377s +Traceback (most recent call last): + File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit + with self.assertRaises(RuntimeError): + ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^ +AssertionError: RuntimeError not raised + +---------------------------------------------------------------------- +Ran 697 tests in 165.953s FAILED (failures=2, errors=5, skipped=6) I: pybuild base:311: set -e; \ @@ -2554,6 +2590,16 @@ pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' + re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' + re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' + re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' + re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' + re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' @@ -2574,18 +2620,189 @@ g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' - re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' - re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' - re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' - re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' - re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] +testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' +testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok +testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok +testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok +testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok +testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok +testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok +testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok +testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok +testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok +testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok +testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok +testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok +testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok +testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) +The posterior of a gaussian scale mixture with gamma prior ... ok +testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) +The posterior of a gaussian scale mixture with gamma prior ... ok +testGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP) +The posterior of a gaussian scale mixture with gamma prior ... ok +testInvGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma) +The posterior of a gaussian scale mixture with gamma prior ... ok +testInvGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP) +The posterior of a gaussian scale mixture with gamma prior ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok +testParameterValidation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation) +@see: [CSB 0000132] ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok +testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok +testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok +testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok +testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok +testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok +testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok +testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok +testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok +testConstrucor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok +testFindBaseParameter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok +testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok +testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok +testAssignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok +testParameterChaining (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok +testProperties (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok +testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok +testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok +testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok +testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok +testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok +testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok +testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok +testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok +testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok +testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok +testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok +testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. + initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. + momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), +ok +testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok +testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok +testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' +testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok +testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok +testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok +testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' +testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok +testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok +testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok +testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok +testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok +testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok +testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok +testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok +testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok +testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok +testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok +testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok +testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR +testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR +testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR +testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok +testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok +testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok +testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok +testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok +testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok +testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok +testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok +testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok +testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok +testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok +testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok +testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok +testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok +testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok +testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok +testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok +testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok +testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) +@see: [CSB 0000058] ... ok +testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok +testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok +testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok +testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok +testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok +testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok +testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok +testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok +testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok +testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok +testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok +testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok +testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok +testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok +testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok +testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok +testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok +testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok +testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok @@ -2643,27 +2860,137 @@ testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> - content = open(filename).read() +testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) +@see: [CSB 0000122] ... ok +testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) +@see: [CSB 0000030] ... ok +testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) +@see: [CSB 0000029] ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) +Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' +testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> + return csb.io.Pickle.load(open(file, 'rb')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok -testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) -@see: [CSB 0000056] ... ok -testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> - for line in open(structure_file): -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpodwb56ae' mode='r' encoding='UTF-8'> - break +testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok +testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok +testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok +testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok +testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok +testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok +testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok +testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok +testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok +testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok +testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok +testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok +testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok +testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok +testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok +testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok +testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok +testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok +testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok +testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok +testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) +@todo: more checks are needed here (e.g. append an atom to different residues) ... ok +testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) +@bug: check for overlapping SNs in a Chain ... ok +testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok +testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok +testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok +testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok +testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok +testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok +testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok +testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok +testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok +testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok +testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok +testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok +testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok +testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok +testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok +testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok +testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok +testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok +testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeh7npxcy' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok -testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok -testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) -@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpld04gmnx' mode='r' encoding='UTF-8'> - generated = open(tmp.name).read() +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpumrspsn5' mode='r' encoding='UTF-8'> + self.assertEqual(pdbraw, open(tmp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok +testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok +testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok +testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok +testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok +testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok +testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok +testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok +testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok +testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok +testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok +testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok +testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok +testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok +testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok +testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok +testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok +testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok +testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok +testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok +testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok +testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok +testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok +testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok +testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok +testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok +testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok +testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok +testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok +testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok +testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok +testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok +testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok +runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok +testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok +testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok +testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok +testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok +testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting) @see: [CSB 0000067] ... ok testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok @@ -2741,92 +3068,48 @@ for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok -testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok -testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok -testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok -testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> - content = open(self.file).read() -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead - array = numpy.fromstring(map_data, numpy.float32, count) -ok -testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok -testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok -testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok -testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok -testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok -testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok -testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) -Test creating an empty L{Clans} instance. ... ok -testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok -testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok -testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok -testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok -testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok -testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok -testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok -testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> - self._clans_instance.filename)).read().split('\n', 1)[1] +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'> + content = open(filename).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok -testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok -testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok -testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) -Test parsing of a small dummy file with known values ... ok -testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) -Test whether the premature (before parsing) access to clans_instance is ... ok -testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok -testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok -testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok -testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok -testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok +testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist) +@see: [CSB 0000056] ... ok +testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'> + for line in open(structure_file): ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok -testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok -testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjdy4ly3w' mode='r' encoding='UTF-8'> + break ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> - content = open(self.file).read() +testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok +testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok +testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M) +@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2i7ke26d' mode='r' encoding='UTF-8'> + generated = open(tmp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq9tktn_4' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6_lplagb' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpajes1wwt' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwu2jcqow' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpupev6c7u' mode='r' encoding='UTF-8'> +testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpw3emk221' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7c8kh09j' mode='r' encoding='UTF-8'> +testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2m27ax7f' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpxyzv4hpc' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmyazibi9' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzaxj2mj5' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0kqsuyvk' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2838,11 +3121,11 @@ testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok -testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcvchjnl0' mode='r' encoding='UTF-8'> +testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe51n01h_' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.alignment_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9_d2uuhh' mode='r' encoding='UTF-8'> +testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp60dx6yb3' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.sequence_string) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -2856,64 +3139,70 @@ testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok -testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok -testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok -testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok -testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok -testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok -testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok -testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok -testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok -testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok -testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok -testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok -testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok -testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok -testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok -testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok -testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok -testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok -testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok -testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok -testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok -testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok -testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok -testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok -testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok -testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok -testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok -testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok -testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose) -@see: [CSB 0000058] ... ok -testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok -testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok -testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok -testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok -testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok -testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok -testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok -testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok -testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok -testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok -testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok -testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok -testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok -testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok -testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok -testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok -testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok -testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok -testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead + array = numpy.fromstring(map_data, numpy.float32, count) +ok +testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok +testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok +testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok +testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok +testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok +testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok +testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok +testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok +testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok +testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'> + content = open(self.file).read() +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok +testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok +testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit) +Test creating an empty L{Clans} instance. ... ok +testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok +testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok +testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok +testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok +testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok +testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok +testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok +testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'> + self._clans_instance.filename)).read().split('\n', 1)[1] +ResourceWarning: Enable tracemalloc to get the object allocation traceback +ok +testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok +testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok +testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok +testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile) +Test parsing of a small dummy file with known values ... ok +testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter) +Test whether the premature (before parsing) access to clans_instance is ... ok +testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok +testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok +testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok +testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok +testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok +testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... ok testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok @@ -2946,7 +3235,7 @@ testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp5yhls_tk' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjnsyotyx' mode='r' encoding='UTF-8'> new = open(tmp.name).read().rstrip() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3020,10 +3309,10 @@ testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkhk11wpo' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcbjl37_c' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6f49pu0i' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprd1xg9s5' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3039,10 +3328,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp0lerusl8' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpw4xeyafs' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2xvzpgni' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfxudn4im' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3058,10 +3347,10 @@ testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok -testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsoiu47iy' mode='r' encoding='UTF-8'> +testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4eymxwsd' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6oetttzf' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbnk3_qlg' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3088,10 +3377,10 @@ testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmphk_zagw1' mode='r' encoding='UTF-8'> +testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_1k5ye9a' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcqk2mljn' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpvi_fn_49' mode='r' encoding='UTF-8'> self.assertEqual(open(tmp.name).read().strip(), self.data) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3116,223 +3405,30 @@ testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok -testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom) -@see: [CSB 0000122] ... ok -testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation) -@see: [CSB 0000030] ... ok -testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone) -@see: [CSB 0000029] ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates) -Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines' -testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'> - return csb.io.Pickle.load(open(file, 'rb')) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok -testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok -testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok -testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok -testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok -testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok -testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok -testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok -testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok -testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok -testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok -testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok -testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok -testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok -testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok -testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok -testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok -testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok -testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok -testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok -testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok -testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok -testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue) -@todo: more checks are needed here (e.g. append an atom to different residues) ... ok -testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber) -@bug: check for overlapping SNs in a Chain ... ok -testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok -testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok -testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok -testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok -testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok -testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok -testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok -testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok -testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok -testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok -testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok -testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok -testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok -testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok -testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok -testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok -testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok -testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok -testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok -testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmplcrwhz85' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpiev4tr9w' mode='r' encoding='UTF-8'> - self.assertEqual(pdbraw, open(tmp.name).read()) -ResourceWarning: Enable tracemalloc to get the object allocation traceback -ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok -testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok -testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok -testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok -testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok -testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok -testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok -testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok -testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok -testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok -testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok -testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok -testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok -testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow' -testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok -testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok -testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok -testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble) -The posterior of a gaussian scale mixture with gamma prior ... ok -testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma) -The posterior of a gaussian scale mixture with gamma prior ... ok -testGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP) -The posterior of a gaussian scale mixture with gamma prior ... ok -testInvGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma) -The posterior of a gaussian scale mixture with gamma prior ... ok -testInvGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP) -The posterior of a gaussian scale mixture with gamma prior ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok -testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok -testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok -testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok -testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok -testConstrucor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok -testFindBaseParameter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok -testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok -testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok -testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok -testAssignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok -testParameterChaining (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok -testProperties (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok -testParameterValidation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation) -@see: [CSB 0000132] ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok -testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok -testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok -testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok -testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok -testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok -testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok -testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok -testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok -testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok -testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok -testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok -testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok -testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok -testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok -testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok -testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite. - initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)), -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite. - momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d), -ok -testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok -testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok -testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.' -testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok -testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok -testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok -testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.' -testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok -testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok -testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok -testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok -testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok -testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok -testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok -testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok -testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok -testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok -testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok -testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok -testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR -testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR -testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR -testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6wl_czce' mode='r' encoding='UTF-8'> +testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok +testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' +testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' +testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) +r526 ... ok +testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok +testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok +testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok +testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok +testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok +testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok +testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok +testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok +testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok +testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok +testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok +testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok +testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok +testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok +testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok +testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpuo06bz8l' mode='r' encoding='UTF-8'> content = open(self.temp.name).read() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3349,15 +3445,15 @@ testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok -testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpr89g2mld' mode='r' encoding='UTF-8'> +testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3_n2f294' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1ydmrefv' mode='r' encoding='UTF-8'> +testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpndr1f37s' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'A/B/C/') ResourceWarning: Enable tracemalloc to get the object allocation traceback ok -testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpj24ecsgj' mode='r' encoding='UTF-8'> +testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgdo4nn05' mode='r' encoding='UTF-8'> self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3373,7 +3469,7 @@ testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback -/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_n6cw88d' mode='r' encoding='UTF-8'> +/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfj1idedr' mode='r' encoding='UTF-8'> self.assertEqual(open(self.tsv).read(), open(dump.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok @@ -3388,78 +3484,18 @@ testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok -testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpm1q8n8b1' mode='r' encoding='UTF-8'> +testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9zhj7x_q' mode='r' encoding='UTF-8'> self.assertEqual(data, open(temp.name).read()) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok -testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR -testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok -testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok -testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok -testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok -testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok -testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok -testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok -testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL -testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok -testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok -testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok -testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok -testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok -testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok -testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok -testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok -testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok -testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok -testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok -testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok -testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok -testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok -runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok -testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok -testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok -testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok -testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok -testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific' -testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific' -testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles) -r526 ... ok -testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok -testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok -testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok -testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok -testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok -testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok -testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok -testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok -testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok -testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok -testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok -testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok -testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok ====================================================================== ERROR: testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) @@ -3519,6 +3555,14 @@ AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'? ====================================================================== +FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testComparison) +---------------------------------------------------------------------- +Traceback (most recent call last): + File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py", line 73, in testComparison + self.assertFalse(self.enum.C == 66) +AssertionError: True is not false + +====================================================================== FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ---------------------------------------------------------------------- Traceback (most recent call last): @@ -3527,16 +3571,8 @@ ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AssertionError: RuntimeError not raised -====================================================================== -FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testComparison) ----------------------------------------------------------------------- -Traceback (most recent call last): - File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py", line 73, in testComparison - self.assertFalse(self.enum.C == 66) -AssertionError: True is not false - ---------------------------------------------------------------------- -Ran 697 tests in 253.880s +Ran 697 tests in 164.873s FAILED (failures=2, errors=5, skipped=6) make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg' @@ -3663,311 +3699,352 @@ running install_lib creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/whatif.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/hhpred.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/clans.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/procheck.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/cs.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/noe.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/hhpred.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/mrc.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/noe.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/clans.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/whatif.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/tsv.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/maxent.py to maxent.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py to __init__.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/rand.py to rand.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/ars.py to ars.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' +/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/dssp.py to dssp.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/vasco.py to vasco.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/fasta.py to fasta.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/psipred.py to psipred.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py to whatif.cpython-313.pyc +/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/clans.py to clans.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/noe.py to noe.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py to procheck.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' @@ -3979,115 +4056,74 @@ /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/fasta.py to fasta.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/dssp.py to dssp.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py to whatif.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/psipred.py to psipred.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/clans.py to clans.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/svg.py to svg.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' -/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/noe.py to noe.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/vasco.py to vasco.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/mrc.py to mrc.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/cs.py to cs.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/cs.py to cs.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/ars.py to ars.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py to __init__.cpython-313.pyc -/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/maxent.py to maxent.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/rand.py to rand.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/build.py to build.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/plots.py to plots.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/integrators.py to integrators.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/tsv.py to tsv.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/plots.py to plots.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/helloworld.py to helloworld.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/precision.py to precision.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfite.py to bfite.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/csfrag.py to csfrag.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/precision.py to precision.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/embd.py to embd.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfit.py to bfit.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/csfrag.py to csfrag.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/promix.py to promix.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/wham.py to wham.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/build.py to build.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/app.py to app.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-313.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/app.py to app.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/integrators.py to integrators.cpython-313.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__init__.py to __init__.cpython-313.pyc running install_egg_info Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt @@ -4221,311 +4257,352 @@ running install_lib creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/maxent.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/rand.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/ars.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/scalemixture.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/mixtures.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/whatif.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/mrc.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/procheck.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/noe.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/cs.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/clans.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/hhpred.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/cs.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/whatif.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/noe.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/dssp.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/rand.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/ars.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/maxent.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/mixtures.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/scalemixture.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__pycache__/integrators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__pycache__/tsv.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/ensembles.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/wham.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/ensembles.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__pycache__ -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__pycache__ +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__pycache__ +creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data +copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__pycache__ copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric -creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__pycache__/integrators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__ -copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/maxent.py to maxent.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__init__.py to __init__.cpython-312.pyc +/usr/lib/python3.12/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/rand.py to rand.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/ars.py to ars.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-312.pyc +/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-312.pyc +/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' +/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/dssp.py to dssp.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/vasco.py to vasco.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/fasta.py to fasta.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/psipred.py to psipred.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py to whatif.cpython-312.pyc +/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' +/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/clans.py to clans.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/noe.py to noe.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py to procheck.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' @@ -4537,115 +4614,74 @@ /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/fasta.py to fasta.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/dssp.py to dssp.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py to whatif.cpython-312.pyc -/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/psipred.py to psipred.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/clans.py to clans.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/svg.py to svg.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-312.pyc -/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' -/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/noe.py to noe.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/vasco.py to vasco.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/mrc.py to mrc.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/cs.py to cs.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/cs.py to cs.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-312.pyc -/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' -/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/ars.py to ars.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__init__.py to __init__.cpython-312.pyc -/usr/lib/python3.12/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/maxent.py to maxent.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/rand.py to rand.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/build.py to build.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/plots.py to plots.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/integrators.py to integrators.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/tsv.py to tsv.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/plots.py to plots.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/helloworld.py to helloworld.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/precision.py to precision.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/bfite.py to bfite.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/csfrag.py to csfrag.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/precision.py to precision.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/embd.py to embd.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/bfit.py to bfit.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/csfrag.py to csfrag.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/promix.py to promix.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/wham.py to wham.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/build.py to build.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/app.py to app.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-312.pyc +byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/app.py to app.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/integrators.py to integrators.cpython-312.pyc -byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb-1.2.5.egg-info Skipping SOURCES.txt @@ -4690,12 +4726,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6443/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6443/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/24523 and its subdirectories -I: Current time: Mon Jan 13 04:04:20 -12 2025 -I: pbuilder-time-stamp: 1736784260 +I: removing directory /srv/workspace/pbuilder/6443 and its subdirectories +I: Current time: Tue Jan 14 06:13:53 +14 2025 +I: pbuilder-time-stamp: 1736784833