Diff of the two buildlogs: -- --- b1/build.log 2024-12-12 01:46:31.120780260 +0000 +++ b2/build.log 2024-12-12 01:48:43.362797569 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 11 13:45:05 -12 2024 -I: pbuilder-time-stamp: 1733967905 +I: Current time: Thu Dec 12 15:46:42 +14 2024 +I: pbuilder-time-stamp: 1733968002 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking r-cran-gridbase_0.4-7-5.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/28375/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4899/tmp/hooks/D01_modify_environment starting +debug: Running on ff4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 12 01:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4899/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4899/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='66116cd9ec9d46328089b516a1bf41c1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='28375' - PS1='# ' - PS2='> ' + INVOCATION_ID=c7b804020b5b4595999a7cb2b901216f + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4899 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wtOPHpPj/pbuilderrc_GimD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wtOPHpPj/b1 --logfile b1/build.log r-cran-gridbase_0.4-7-5.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wtOPHpPj/pbuilderrc_ZSna --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wtOPHpPj/b2 --logfile b2/build.log r-cran-gridbase_0.4-7-5.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64z 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/28375/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/4899/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -298,7 +330,7 @@ Get: 185 http://deb.debian.org/debian trixie/main armhf libwww-curl-perl armhf 4.17-11 [55.9 kB] Get: 186 http://deb.debian.org/debian trixie/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 187 http://deb.debian.org/debian trixie/main armhf dh-r all 20231212 [42.2 kB] -Fetched 93.3 MB in 1s (68.2 MB/s) +Fetched 93.3 MB in 7s (14.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19680 files and directories currently installed.) @@ -917,8 +949,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Dec 12 01:45:57 UTC 2024. -Universal Time is now: Thu Dec 12 01:45:57 UTC 2024. +Local time is now: Thu Dec 12 01:48:08 UTC 2024. +Universal Time is now: Thu Dec 12 01:48:08 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14) ... @@ -1069,22 +1101,43 @@ update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... -Creating config file /etc/R/Renviron with new version +/var/lib/dpkg/info/r-base-core.postinst: line 15: 9365 Segmentation fault ucf "$tmpRenviron" /etc/R/Renviron +dpkg: error processing package r-base-core (--configure): + installed r-base-core package post-installation script subprocess returned error exit status 139 Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... -Setting up r-base-dev (4.4.2-1) ... +dpkg: dependency problems prevent configuration of r-base-dev: + r-base-dev depends on r-base-core (>= 4.4.2-1); however: + Package r-base-core is not configured yet. + +dpkg: error processing package r-base-dev (--configure): + dependency problems - leaving unconfigured Setting up libmoose-perl:armhf (2.2207-1+b2) ... Setting up libnamespace-clean-perl (0.27-2) ... +dpkg: dependency problems prevent configuration of dh-r: + dh-r depends on r-base-dev; however: + Package r-base-dev is not configured yet. + +dpkg: error processing package dh-r (--configure): + dependency problems - leaving unconfigured Setting up libwww-curl-simple-perl (0.100191-3) ... -Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +Errors were encountered while processing: + r-base-core + r-base-dev + dh-r +E: Sub-process /usr/bin/dpkg returned an error code (1) +Setting up r-base-core (4.4.2-1) ... +Creating config file /etc/R/Renviron with new version +Setting up r-base-dev (4.4.2-1) ... +Setting up dh-r (20231212) ... Reading package lists... Building dependency tree... Reading state information... @@ -1092,85 +1145,11 @@ Initializing package states... Writing extended state information... Building tag database... - -> Finished parsing the build-deps -I: Building the package -I: Running cd /build/reproducible-path/r-cran-gridbase-0.4-7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-cran-gridbase_0.4-7-5_source.changes -dpkg-buildpackage: info: source package r-cran-gridbase -dpkg-buildpackage: info: source version 0.4-7-5 -dpkg-buildpackage: info: source distribution unstable -dpkg-buildpackage: info: source changed by Andreas Tille - dpkg-source --before-build . -dpkg-buildpackage: info: host architecture armhf - debian/rules clean -dh clean --buildsystem R - dh_auto_clean -O--buildsystem=R - dh_autoreconf_clean -O--buildsystem=R - dh_clean -O--buildsystem=R - debian/rules binary -dh binary --buildsystem R - dh_update_autotools_config -O--buildsystem=R - dh_autoreconf -O--buildsystem=R - dh_auto_configure -O--buildsystem=R - dh_auto_build -O--buildsystem=R - dh_auto_test -O--buildsystem=R - create-stamp debian/debhelper-build-stamp - dh_testroot -O--buildsystem=R - dh_prep -O--buildsystem=R - dh_auto_install --destdir=debian/r-cran-gridbase/ -O--buildsystem=R -I: R packages needed for DEP8: lattice -I: R Package: gridBase Version: 0.4-7 -I: Building using R version 4.4.2-1 -I: R API version: r-api-4.0 -I: Using built-time from d/changelog: Sat, 16 May 2020 07:08:05 +0200 - mkdir -p /build/reproducible-path/r-cran-gridbase-0.4-7/debian/r-cran-gridbase/usr/lib/R/site-library - R CMD INSTALL -l /build/reproducible-path/r-cran-gridbase-0.4-7/debian/r-cran-gridbase/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 16 May 2020 07:08:05 +0200'" -* installing *source* package 'gridBase' ... -** package 'gridBase' successfully unpacked and MD5 sums checked -** using staged installation -** R -** demo -** inst -** byte-compile and prepare package for lazy loading -** help -*** installing help indices -** building package indices -** installing vignettes -** testing if installed package can be loaded from temporary location -** testing if installed package can be loaded from final location -** testing if installed package keeps a record of temporary installation path -* DONE (gridBase) -W: Ignoring specified R dependency: R (>= 2.3.0) -I: Using r-cran-lattice for Recommends:lattice -I: Use r-cran-gridbase as Debian binary package for variables substitution - dh_installdocs -O--buildsystem=R - dh_installchangelogs -O--buildsystem=R - dh_installexamples -O--buildsystem=R - dh_installinit -O--buildsystem=R - dh_installsystemduser -O--buildsystem=R - dh_perl -O--buildsystem=R - dh_link -O--buildsystem=R - dh_strip_nondeterminism -O--buildsystem=R - dh_compress -O--buildsystem=R - dh_fixperms -O--buildsystem=R - dh_missing -O--buildsystem=R - dh_installdeb -O--buildsystem=R - dh_gencontrol -O--buildsystem=R - dh_md5sums -O--buildsystem=R - dh_builddeb -O--buildsystem=R -dpkg-deb: building package 'r-cran-gridbase' in '../r-cran-gridbase_0.4-7-5_all.deb'. - dpkg-genbuildinfo --build=binary -O../r-cran-gridbase_0.4-7-5_armhf.buildinfo - dpkg-genchanges --build=binary -O../r-cran-gridbase_0.4-7-5_armhf.changes -dpkg-genchanges: info: binary-only upload (no source code included) - dpkg-source --after-build . -dpkg-buildpackage: info: binary-only upload (no source included) -dpkg-genchanges: info: not including original source code in upload -I: copying local configuration +E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/28375 and its subdirectories -I: Current time: Wed Dec 11 13:46:24 -12 2024 -I: pbuilder-time-stamp: 1733967984 +I: removing directory /srv/workspace/pbuilder/4899 and its subdirectories