Diff of the two buildlogs: -- --- b1/build.log 2024-12-04 06:47:49.564356383 +0000 +++ b2/build.log 2024-12-04 07:14:13.544597708 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 3 18:33:22 -12 2024 -I: pbuilder-time-stamp: 1733294002 +I: Current time: Wed Dec 4 20:48:07 +14 2024 +I: pbuilder-time-stamp: 1733294887 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/630/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/11751/tmp/hooks/D01_modify_environment starting +debug: Running on virt64a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 4 06:48 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/11751/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/11751/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='918df452ca224d37896a61b757dbde39' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='630' - PS1='# ' - PS2='> ' + INVOCATION_ID=25dfbc259b6a4bbc8fd4376e14a481db + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=11751 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tN5TBszM/pbuilderrc_kgvg --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tN5TBszM/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='110' - SUDO_UID='103' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tN5TBszM/pbuilderrc_GKAy --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tN5TBszM/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=114 + SUDO_UID=108 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt32z 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/630/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/11751/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -193,7 +225,7 @@ Get: 64 http://deb.debian.org/debian trixie/main armhf libspoa-dev armhf 4.1.4-2+b1 [9788 B] Get: 65 http://deb.debian.org/debian trixie/main armhf libthread-pool-dev armhf 4.0.0-2 [7304 B] Get: 66 http://deb.debian.org/debian trixie/main armhf rampler armhf 2.1.1-1 [19.3 kB] -Fetched 32.2 MB in 0s (78.0 MB/s) +Fetched 32.2 MB in 1s (47.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) @@ -472,7 +504,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/11751/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/11751/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -498,7 +534,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (1.1s) +-- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -513,7 +549,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks @@ -525,12 +561,14 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' -[ 30%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +[ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); @@ -544,8 +582,6 @@ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu -[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': @@ -570,8 +606,8 @@ cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' -make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build +make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o @@ -599,119 +635,119 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (3 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (2 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (2 ms) +[ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (3 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (9 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (5 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (10 ms) -[----------] 5 tests from RaconInitializeTest (31 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (6 ms) +[----------] 5 tests from RaconInitializeTest (17 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.001429 s -[racon::Polisher::initialize] loaded sequences 0.067299 s -[racon::Polisher::initialize] loaded overlaps 0.000847 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.054131 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.078104 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.106129 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.134065 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.158134 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.182186 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.246246 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.278128 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.302092 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.326064 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.354115 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.382120 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.410083 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.422082 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.442117 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.474123 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.490065 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.510111 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.542099 s [racon::Polisher::initialize] aligning overlaps [====================] 0.581781 s -[racon::Polisher::initialize] transformed data into windows 0.003090 s -[racon::Polisher::polish] generating consensus [=> ] 0.340654 s [racon::Polisher::polish] generating consensus [==> ] 0.648651 s [racon::Polisher::polish] generating consensus [===> ] 0.904665 s [racon::Polisher::polish] generating consensus [====> ] 1.100671 s [racon::Polisher::polish] generating consensus [=====> ] 1.212491 s [racon::Polisher::polish] generating consensus [======> ] 1.340623 s [racon::Polisher::polish] generating consensus [=======> ] 1.452621 s [racon::Polisher::polish] generating consensus [========> ] 1.688555 s [racon::Polisher::polish] generating consensus [=========> ] 1.808645 s [racon::Polisher::polish] generating consensus [==========> ] 2.132661 s [racon::Polisher::polish] generating consensus [===========> ] 2.428648 s [racon::Polisher::polish] generating consensus [============> ] 2.904674 s [racon::Polisher::polish] generating consensus [=============> ] 3.508702 s [racon::Polisher::polish] generating consensus [==============> ] 4.164662 s [racon::Polisher::polish] generating consensus [===============> ] 4.600646 s [racon::Polisher::polish] generating consensus [================> ] 4.924656 s [racon::Polisher::polish] generating consensus [=================> ] 5.312074 s [racon::Polisher::polish] generating consensus [==================> ] 5.548061 s [racon::Polisher::polish] generating consensus [===================>] 5.856069 s [racon::Polisher::polish] generating consensus [====================] 7.081213 s -[racon::Polisher::] total = 7.770015 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (7807 ms) +[racon::Polisher::initialize] loaded target sequences 0.001742 s +[racon::Polisher::initialize] loaded sequences 0.088356 s +[racon::Polisher::initialize] loaded overlaps 0.002994 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.088245 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.152225 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.244177 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.296960 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.360858 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.420855 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.549014 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.617137 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.677140 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.733171 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.837147 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.933141 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.957078 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.958384 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.959669 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.989381 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.990341 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.991278 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.999531 s [racon::Polisher::initialize] aligning overlaps [====================] 1.002791 s +[racon::Polisher::initialize] transformed data into windows 0.008786 s +[racon::Polisher::polish] generating consensus [=> ] 0.708484 s [racon::Polisher::polish] generating consensus [==> ] 1.636464 s [racon::Polisher::polish] generating consensus [===> ] 2.124466 s [racon::Polisher::polish] generating consensus [====> ] 2.424726 s [racon::Polisher::polish] generating consensus [=====> ] 2.664684 s [racon::Polisher::polish] generating consensus [======> ] 2.904444 s [racon::Polisher::polish] generating consensus [=======> ] 3.164448 s [racon::Polisher::polish] generating consensus [========> ] 3.408473 s [racon::Polisher::polish] generating consensus [=========> ] 3.770617 s [racon::Polisher::polish] generating consensus [==========> ] 4.100428 s [racon::Polisher::polish] generating consensus [===========> ] 4.704450 s [racon::Polisher::polish] generating consensus [============> ] 5.492458 s [racon::Polisher::polish] generating consensus [=============> ] 6.621392 s [racon::Polisher::polish] generating consensus [==============> ] 7.728454 s [racon::Polisher::polish] generating consensus [===============> ] 8.453320 s [racon::Polisher::polish] generating consensus [================> ] 9.069722 s [racon::Polisher::polish] generating consensus [=================> ] 9.709650 s [racon::Polisher::polish] generating consensus [==================> ] 10.141293 s [racon::Polisher::polish] generating consensus [===================>] 10.645733 s [racon::Polisher::polish] generating consensus [====================] 12.093987 s +[racon::Polisher::] total = 13.248588 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (13262 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.001035 s -[racon::Polisher::initialize] loaded sequences 0.028697 s -[racon::Polisher::initialize] loaded overlaps 0.000587 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.045062 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.069040 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.097079 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.121022 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.149057 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.173037 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.233065 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.265051 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.289005 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.309026 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.337031 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.365032 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.393008 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.405007 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.425033 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.457024 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.469091 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.493022 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.529022 s [racon::Polisher::initialize] aligning overlaps [====================] 0.563515 s -[racon::Polisher::initialize] transformed data into windows 0.000889 s -[racon::Polisher::polish] generating consensus [=> ] 0.360197 s [racon::Polisher::polish] generating consensus [==> ] 0.780216 s [racon::Polisher::polish] generating consensus [===> ] 1.088202 s [racon::Polisher::polish] generating consensus [====> ] 1.332248 s [racon::Polisher::polish] generating consensus [=====> ] 1.484199 s [racon::Polisher::polish] generating consensus [======> ] 1.652217 s [racon::Polisher::polish] generating consensus [=======> ] 1.832208 s [racon::Polisher::polish] generating consensus [========> ] 2.004225 s [racon::Polisher::polish] generating consensus [=========> ] 2.244166 s [racon::Polisher::polish] generating consensus [==========> ] 2.672206 s [racon::Polisher::polish] generating consensus [===========> ] 3.600208 s [racon::Polisher::polish] generating consensus [============> ] 4.140204 s [racon::Polisher::polish] generating consensus [=============> ] 4.940206 s [racon::Polisher::polish] generating consensus [==============> ] 5.524204 s [racon::Polisher::polish] generating consensus [===============> ] 6.108235 s [racon::Polisher::polish] generating consensus [================> ] 6.588151 s [racon::Polisher::polish] generating consensus [=================> ] 6.976203 s [racon::Polisher::polish] generating consensus [==================> ] 7.268248 s [racon::Polisher::polish] generating consensus [===================>] 7.608008 s [racon::Polisher::polish] generating consensus [====================] 9.645736 s -[racon::Polisher::] total = 10.270796 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (10309 ms) +[racon::Polisher::initialize] loaded target sequences 0.001554 s +[racon::Polisher::initialize] loaded sequences 0.051501 s +[racon::Polisher::initialize] loaded overlaps 0.000763 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.097240 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.145198 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.209208 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.256981 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.321210 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.356334 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.428379 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.461204 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.489133 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.513094 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.549109 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.577132 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.609084 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.624887 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.636919 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.653203 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.676335 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.709679 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.710003 s [racon::Polisher::initialize] aligning overlaps [====================] 0.730813 s +[racon::Polisher::initialize] transformed data into windows 0.001843 s +[racon::Polisher::polish] generating consensus [=> ] 0.611726 s [racon::Polisher::polish] generating consensus [==> ] 1.326785 s [racon::Polisher::polish] generating consensus [===> ] 1.823654 s [racon::Polisher::polish] generating consensus [====> ] 2.230792 s [racon::Polisher::polish] generating consensus [=====> ] 2.482876 s [racon::Polisher::polish] generating consensus [======> ] 2.765184 s [racon::Polisher::polish] generating consensus [=======> ] 3.031700 s [racon::Polisher::polish] generating consensus [========> ] 3.459806 s [racon::Polisher::polish] generating consensus [=========> ] 3.839746 s [racon::Polisher::polish] generating consensus [==========> ] 4.519118 s [racon::Polisher::polish] generating consensus [===========> ] 5.295730 s [racon::Polisher::polish] generating consensus [============> ] 6.283781 s [racon::Polisher::polish] generating consensus [=============> ] 7.730762 s [racon::Polisher::polish] generating consensus [==============> ] 8.822764 s [racon::Polisher::polish] generating consensus [===============> ] 9.727824 s [racon::Polisher::polish] generating consensus [================> ] 10.467939 s [racon::Polisher::polish] generating consensus [=================> ] 11.363720 s [racon::Polisher::polish] generating consensus [==================> ] 11.931827 s [racon::Polisher::polish] generating consensus [===================>] 12.607684 s [racon::Polisher::polish] generating consensus [====================] 16.212128 s +[racon::Polisher::] total = 17.028452 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (17041 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.001043 s -[racon::Polisher::initialize] loaded sequences 0.060814 s -[racon::Polisher::initialize] loaded overlaps 0.035349 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.007903 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.007941 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.007963 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.007992 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.008019 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.008044 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.008073 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.008099 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.008125 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.008153 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.008179 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008205 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008233 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008258 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008283 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008311 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008337 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008877 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009366 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009678 s -[racon::Polisher::initialize] transformed data into windows 0.002789 s -[racon::Polisher::polish] generating consensus [=> ] 0.342039 s [racon::Polisher::polish] generating consensus [==> ] 0.654070 s [racon::Polisher::polish] generating consensus [===> ] 0.914024 s [racon::Polisher::polish] generating consensus [====> ] 1.122055 s [racon::Polisher::polish] generating consensus [=====> ] 1.218017 s [racon::Polisher::polish] generating consensus [======> ] 1.426008 s [racon::Polisher::polish] generating consensus [=======> ] 1.542005 s [racon::Polisher::polish] generating consensus [========> ] 1.694050 s [racon::Polisher::polish] generating consensus [=========> ] 1.866042 s [racon::Polisher::polish] generating consensus [==========> ] 2.074019 s [racon::Polisher::polish] generating consensus [===========> ] 2.438014 s [racon::Polisher::polish] generating consensus [============> ] 2.894014 s [racon::Polisher::polish] generating consensus [=============> ] 3.506026 s [racon::Polisher::polish] generating consensus [==============> ] 4.150022 s [racon::Polisher::polish] generating consensus [===============> ] 4.578023 s [racon::Polisher::polish] generating consensus [================> ] 4.898079 s [racon::Polisher::polish] generating consensus [=================> ] 5.322020 s [racon::Polisher::polish] generating consensus [==================> ] 5.554014 s [racon::Polisher::polish] generating consensus [===================>] 5.766015 s [racon::Polisher::polish] generating consensus [====================] 6.880920 s -[racon::Polisher::] total = 7.024450 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (7060 ms) +[racon::Polisher::initialize] loaded target sequences 0.001602 s +[racon::Polisher::initialize] loaded sequences 0.086244 s +[racon::Polisher::initialize] loaded overlaps 0.041650 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.014807 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.014847 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.014865 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.014882 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.014897 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.014913 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.014930 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.014947 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.014963 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.014980 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.014994 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.015010 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.015026 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.015042 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.015119 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.015137 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.015152 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.015167 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.015181 s [racon::Polisher::initialize] aligning overlaps [====================] 0.015196 s +[racon::Polisher::initialize] transformed data into windows 0.008223 s +[racon::Polisher::polish] generating consensus [=> ] 0.544536 s [racon::Polisher::polish] generating consensus [==> ] 1.048678 s [racon::Polisher::polish] generating consensus [===> ] 1.479556 s [racon::Polisher::polish] generating consensus [====> ] 1.919606 s [racon::Polisher::polish] generating consensus [=====> ] 2.103593 s [racon::Polisher::polish] generating consensus [======> ] 2.284564 s [racon::Polisher::polish] generating consensus [=======> ] 2.476524 s [racon::Polisher::polish] generating consensus [========> ] 2.777708 s [racon::Polisher::polish] generating consensus [=========> ] 3.035562 s [racon::Polisher::polish] generating consensus [==========> ] 3.460567 s [racon::Polisher::polish] generating consensus [===========> ] 4.140551 s [racon::Polisher::polish] generating consensus [============> ] 4.748517 s [racon::Polisher::polish] generating consensus [=============> ] 6.000607 s [racon::Polisher::polish] generating consensus [==============> ] 7.147556 s [racon::Polisher::polish] generating consensus [===============> ] 8.271576 s [racon::Polisher::polish] generating consensus [================> ] 8.836481 s [racon::Polisher::polish] generating consensus [=================> ] 9.523732 s [racon::Polisher::polish] generating consensus [==================> ] 9.943563 s [racon::Polisher::polish] generating consensus [===================>] 10.339571 s [racon::Polisher::polish] generating consensus [====================] 12.414729 s +[racon::Polisher::] total = 12.601222 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (12613 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.001007 s -[racon::Polisher::initialize] loaded sequences 0.028700 s -[racon::Polisher::initialize] loaded overlaps 0.035579 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.007492 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.007815 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.008128 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.008441 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.008749 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.009062 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.009394 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.009708 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.010021 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.010352 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.010666 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.010981 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.011294 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.011603 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.011912 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.012232 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.012536 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.012848 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.013180 s [racon::Polisher::initialize] aligning overlaps [====================] 0.013501 s -[racon::Polisher::initialize] transformed data into windows 0.000896 s -[racon::Polisher::polish] generating consensus [=> ] 0.338281 s [racon::Polisher::polish] generating consensus [==> ] 0.714287 s [racon::Polisher::polish] generating consensus [===> ] 1.006292 s [racon::Polisher::polish] generating consensus [====> ] 1.230304 s [racon::Polisher::polish] generating consensus [=====> ] 1.370267 s [racon::Polisher::polish] generating consensus [======> ] 1.522275 s [racon::Polisher::polish] generating consensus [=======> ] 1.678276 s [racon::Polisher::polish] generating consensus [========> ] 1.890302 s [racon::Polisher::polish] generating consensus [=========> ] 2.102282 s [racon::Polisher::polish] generating consensus [==========> ] 2.450263 s [racon::Polisher::polish] generating consensus [===========> ] 2.858267 s [racon::Polisher::polish] generating consensus [============> ] 3.370280 s [racon::Polisher::polish] generating consensus [=============> ] 4.126342 s [racon::Polisher::polish] generating consensus [==============> ] 4.734265 s [racon::Polisher::polish] generating consensus [===============> ] 5.350283 s [racon::Polisher::polish] generating consensus [================> ] 5.894330 s [racon::Polisher::polish] generating consensus [=================> ] 6.434280 s [racon::Polisher::polish] generating consensus [==================> ] 6.710279 s [racon::Polisher::polish] generating consensus [===================>] 7.030319 s [racon::Polisher::polish] generating consensus [====================] 8.878453 s -[racon::Polisher::] total = 8.984472 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (9022 ms) +[racon::Polisher::initialize] loaded target sequences 0.001602 s +[racon::Polisher::initialize] loaded sequences 0.052619 s +[racon::Polisher::initialize] loaded overlaps 0.043757 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.012727 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.013073 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.013280 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.013469 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.013782 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.013817 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.013837 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.013857 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.013875 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.013890 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.013952 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.013971 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.013986 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.014001 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.014016 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.014030 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.014044 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.014060 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.014075 s [racon::Polisher::initialize] aligning overlaps [====================] 0.014090 s +[racon::Polisher::initialize] transformed data into windows 0.001131 s +[racon::Polisher::polish] generating consensus [=> ] 0.632658 s [racon::Polisher::polish] generating consensus [==> ] 1.405631 s [racon::Polisher::polish] generating consensus [===> ] 1.993628 s [racon::Polisher::polish] generating consensus [====> ] 2.553498 s [racon::Polisher::polish] generating consensus [=====> ] 2.868659 s [racon::Polisher::polish] generating consensus [======> ] 3.164670 s [racon::Polisher::polish] generating consensus [=======> ] 3.504666 s [racon::Polisher::polish] generating consensus [========> ] 3.860695 s [racon::Polisher::polish] generating consensus [=========> ] 4.469867 s [racon::Polisher::polish] generating consensus [==========> ] 4.888655 s [racon::Polisher::polish] generating consensus [===========> ] 5.649500 s [racon::Polisher::polish] generating consensus [============> ] 6.612679 s [racon::Polisher::polish] generating consensus [=============> ] 8.013484 s [racon::Polisher::polish] generating consensus [==============> ] 9.229621 s [racon::Polisher::polish] generating consensus [===============> ] 10.189253 s [racon::Polisher::polish] generating consensus [================> ] 11.066834 s [racon::Polisher::polish] generating consensus [=================> ] 11.853459 s [racon::Polisher::polish] generating consensus [==================> ] 12.345611 s [racon::Polisher::polish] generating consensus [===================>] 12.885548 s [racon::Polisher::polish] generating consensus [====================] 16.460722 s +[racon::Polisher::] total = 16.597783 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (16612 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.001043 s -[racon::Polisher::initialize] loaded sequences 0.062650 s -[racon::Polisher::initialize] loaded overlaps 0.000627 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.049001 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.072793 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.104782 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.124733 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.156752 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.180802 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.245019 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.276831 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.300721 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.324730 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.352715 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.380745 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.408755 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.424728 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.444717 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.476945 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.488709 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.512766 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.552744 s [racon::Polisher::initialize] aligning overlaps [====================] 0.578778 s -[racon::Polisher::initialize] transformed data into windows 0.002811 s -[racon::Polisher::polish] generating consensus [=> ] 1.336138 s [racon::Polisher::polish] generating consensus [==> ] 1.336212 s [racon::Polisher::polish] generating consensus [===> ] 2.434765 s [racon::Polisher::polish] generating consensus [====> ] 2.435969 s [racon::Polisher::polish] generating consensus [=====> ] 2.966664 s [racon::Polisher::polish] generating consensus [======> ] 2.967671 s [racon::Polisher::polish] generating consensus [=======> ] 3.393936 s [racon::Polisher::polish] generating consensus [========> ] 3.394010 s [racon::Polisher::polish] generating consensus [=========> ] 4.217930 s [racon::Polisher::polish] generating consensus [==========> ] 4.217981 s [racon::Polisher::polish] generating consensus [===========> ] 7.129925 s [racon::Polisher::polish] generating consensus [============> ] 7.129984 s [racon::Polisher::polish] generating consensus [=============> ] 9.313940 s [racon::Polisher::polish] generating consensus [==============> ] 9.313991 s [racon::Polisher::polish] generating consensus [===============> ] 10.761927 s [racon::Polisher::polish] generating consensus [================> ] 10.762017 s [racon::Polisher::polish] generating consensus [=================> ] 12.097931 s [racon::Polisher::polish] generating consensus [==================> ] 12.097990 s [racon::Polisher::polish] generating consensus [===================>] 13.129893 s [racon::Polisher::polish] generating consensus [====================] 14.278437 s -[racon::Polisher::] total = 14.961402 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (15066 ms) +[racon::Polisher::initialize] loaded target sequences 0.001634 s +[racon::Polisher::initialize] loaded sequences 0.087495 s +[racon::Polisher::initialize] loaded overlaps 0.000739 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.107820 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.167794 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.211776 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.259369 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.291720 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.343817 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.458796 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.490788 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.519521 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.543568 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.579512 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.667585 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.791424 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.811710 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.883711 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.887346 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.903399 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.914759 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.914789 s [racon::Polisher::initialize] aligning overlaps [====================] 0.936970 s +[racon::Polisher::initialize] transformed data into windows 0.008294 s +[racon::Polisher::polish] generating consensus [=> ] 2.002115 s [racon::Polisher::polish] generating consensus [==> ] 2.074002 s [racon::Polisher::polish] generating consensus [===> ] 4.998124 s [racon::Polisher::polish] generating consensus [====> ] 4.999149 s [racon::Polisher::polish] generating consensus [=====> ] 5.898242 s [racon::Polisher::polish] generating consensus [======> ] 5.899513 s [racon::Polisher::polish] generating consensus [=======> ] 7.141316 s [racon::Polisher::polish] generating consensus [========> ] 7.141385 s [racon::Polisher::polish] generating consensus [=========> ] 8.786169 s [racon::Polisher::polish] generating consensus [==========> ] 9.278188 s [racon::Polisher::polish] generating consensus [===========> ] 12.097318 s [racon::Polisher::polish] generating consensus [============> ] 13.042168 s [racon::Polisher::polish] generating consensus [=============> ] 18.237330 s [racon::Polisher::polish] generating consensus [==============> ] 18.909333 s [racon::Polisher::polish] generating consensus [===============> ] 21.522472 s [racon::Polisher::polish] generating consensus [================> ] 21.874405 s [racon::Polisher::polish] generating consensus [=================> ] 24.025320 s [racon::Polisher::polish] generating consensus [==================> ] 24.025380 s [racon::Polisher::polish] generating consensus [===================>] 25.778469 s [racon::Polisher::polish] generating consensus [====================] 29.870839 s +[racon::Polisher::] total = 30.940662 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (30974 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.001256 s -[racon::Polisher::initialize] loaded sequences 0.060847 s -[racon::Polisher::initialize] loaded overlaps 0.000690 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.045465 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.069443 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.097447 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.121442 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.149483 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.173479 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.233466 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.261466 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.285454 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.309451 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.337457 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.365458 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.393440 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.405454 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.441468 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.465440 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.497453 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.533467 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.545464 s [racon::Polisher::initialize] aligning overlaps [====================] 0.578393 s -[racon::Polisher::initialize] transformed data into windows 0.002832 s -[racon::Polisher::polish] generating consensus [=> ] 0.324049 s [racon::Polisher::polish] generating consensus [==> ] 0.624066 s [racon::Polisher::polish] generating consensus [===> ] 0.872058 s [racon::Polisher::polish] generating consensus [====> ] 1.068082 s [racon::Polisher::polish] generating consensus [=====> ] 1.164044 s [racon::Polisher::polish] generating consensus [======> ] 1.284062 s [racon::Polisher::polish] generating consensus [=======> ] 1.404064 s [racon::Polisher::polish] generating consensus [========> ] 1.536132 s [racon::Polisher::polish] generating consensus [=========> ] 1.732053 s [racon::Polisher::polish] generating consensus [==========> ] 1.984060 s [racon::Polisher::polish] generating consensus [===========> ] 2.316057 s [racon::Polisher::polish] generating consensus [============> ] 2.764061 s [racon::Polisher::polish] generating consensus [=============> ] 3.876064 s [racon::Polisher::polish] generating consensus [==============> ] 4.504086 s [racon::Polisher::polish] generating consensus [===============> ] 4.920063 s [racon::Polisher::polish] generating consensus [================> ] 5.228063 s [racon::Polisher::polish] generating consensus [=================> ] 5.616067 s [racon::Polisher::polish] generating consensus [==================> ] 5.840058 s [racon::Polisher::polish] generating consensus [===================>] 6.136064 s [racon::Polisher::polish] generating consensus [====================] 6.906415 s -[racon::Polisher::] total = 7.581433 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (7615 ms) +[racon::Polisher::initialize] loaded target sequences 0.001566 s +[racon::Polisher::initialize] loaded sequences 0.088618 s +[racon::Polisher::initialize] loaded overlaps 0.000765 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.077805 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.109702 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.145189 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.177150 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.196704 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.220670 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.289507 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.325653 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.353626 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.381618 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.413707 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.444121 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.476391 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.497661 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.521566 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.585614 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.605728 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.629671 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.664111 s [racon::Polisher::initialize] aligning overlaps [====================] 0.700054 s +[racon::Polisher::initialize] transformed data into windows 0.009524 s +[racon::Polisher::polish] generating consensus [=> ] 0.613561 s [racon::Polisher::polish] generating consensus [==> ] 1.222592 s [racon::Polisher::polish] generating consensus [===> ] 1.597522 s [racon::Polisher::polish] generating consensus [====> ] 1.978630 s [racon::Polisher::polish] generating consensus [=====> ] 2.186589 s [racon::Polisher::polish] generating consensus [======> ] 2.422805 s [racon::Polisher::polish] generating consensus [=======> ] 2.643108 s [racon::Polisher::polish] generating consensus [========> ] 2.918798 s [racon::Polisher::polish] generating consensus [=========> ] 3.313528 s [racon::Polisher::polish] generating consensus [==========> ] 4.114840 s [racon::Polisher::polish] generating consensus [===========> ] 4.721539 s [racon::Polisher::polish] generating consensus [============> ] 5.350574 s [racon::Polisher::polish] generating consensus [=============> ] 6.374818 s [racon::Polisher::polish] generating consensus [==============> ] 7.190799 s [racon::Polisher::polish] generating consensus [===============> ] 7.962791 s [racon::Polisher::polish] generating consensus [================> ] 8.614875 s [racon::Polisher::polish] generating consensus [=================> ] 9.301529 s [racon::Polisher::polish] generating consensus [==================> ] 9.853522 s [racon::Polisher::polish] generating consensus [===================>] 10.441538 s [racon::Polisher::polish] generating consensus [====================] 12.677621 s +[racon::Polisher::] total = 13.509469 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (13524 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.062509 s -[racon::Polisher::initialize] loaded sequences 0.067048 s -[racon::Polisher::initialize] loaded overlaps 0.017713 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.049025 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.089014 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.105012 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.128996 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.153041 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.177041 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.221028 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.249045 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.289034 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.317022 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.353019 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.405035 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.441022 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.497070 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.525029 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.569041 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.597046 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.613022 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.621011 s [racon::Polisher::initialize] aligning overlaps [====================] 0.679564 s -[racon::Polisher::initialize] transformed data into windows 0.006238 s -[racon::Polisher::polish] generating consensus [=> ] 0.230261 s [racon::Polisher::polish] generating consensus [==> ] 0.490241 s [racon::Polisher::polish] generating consensus [===> ] 0.722339 s [racon::Polisher::polish] generating consensus [====> ] 0.726386 s [racon::Polisher::polish] generating consensus [=====> ] 0.870300 s [racon::Polisher::polish] generating consensus [======> ] 0.974335 s [racon::Polisher::polish] generating consensus [=======> ] 1.126345 s [racon::Polisher::polish] generating consensus [========> ] 1.158401 s [racon::Polisher::polish] generating consensus [=========> ] 1.482204 s [racon::Polisher::polish] generating consensus [==========> ] 1.614179 s [racon::Polisher::polish] generating consensus [===========> ] 1.722288 s [racon::Polisher::polish] generating consensus [============> ] 1.762320 s [racon::Polisher::polish] generating consensus [=============> ] 1.890201 s [racon::Polisher::polish] generating consensus [==============> ] 1.890456 s [racon::Polisher::polish] generating consensus [===============> ] 2.190329 s [racon::Polisher::polish] generating consensus [================> ] 2.190551 s [racon::Polisher::polish] generating consensus [=================> ] 2.774311 s [racon::Polisher::polish] generating consensus [==================> ] 2.974338 s [racon::Polisher::polish] generating consensus [===================>] 3.174377 s [racon::Polisher::polish] generating consensus [====================] 3.199028 s -[racon::Polisher::] total = 4.036338 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (4076 ms) +[racon::Polisher::initialize] loaded target sequences 0.091635 s +[racon::Polisher::initialize] loaded sequences 0.089752 s +[racon::Polisher::initialize] loaded overlaps 0.024035 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.117880 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.170418 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.210289 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.238371 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.266351 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.295041 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.346673 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.378916 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.423034 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.454753 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.494604 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.550167 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.590125 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.634118 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.666098 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.694106 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.750989 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.751835 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.778579 s [racon::Polisher::initialize] aligning overlaps [====================] 0.813335 s +[racon::Polisher::initialize] transformed data into windows 0.013653 s +[racon::Polisher::polish] generating consensus [=> ] 0.355807 s [racon::Polisher::polish] generating consensus [==> ] 0.774434 s [racon::Polisher::polish] generating consensus [===> ] 1.138560 s [racon::Polisher::polish] generating consensus [====> ] 1.138896 s [racon::Polisher::polish] generating consensus [=====> ] 1.358569 s [racon::Polisher::polish] generating consensus [======> ] 1.514624 s [racon::Polisher::polish] generating consensus [=======> ] 1.738608 s [racon::Polisher::polish] generating consensus [========> ] 1.770697 s [racon::Polisher::polish] generating consensus [=========> ] 2.286410 s [racon::Polisher::polish] generating consensus [==========> ] 2.486381 s [racon::Polisher::polish] generating consensus [===========> ] 2.650525 s [racon::Polisher::polish] generating consensus [============> ] 2.710588 s [racon::Polisher::polish] generating consensus [=============> ] 2.906403 s [racon::Polisher::polish] generating consensus [==============> ] 2.906835 s [racon::Polisher::polish] generating consensus [===============> ] 3.354573 s [racon::Polisher::polish] generating consensus [================> ] 3.355203 s [racon::Polisher::polish] generating consensus [=================> ] 4.258621 s [racon::Polisher::polish] generating consensus [==================> ] 4.558550 s [racon::Polisher::polish] generating consensus [===================>] 4.896776 s [racon::Polisher::polish] generating consensus [====================] 4.968429 s +[racon::Polisher::] total = 6.003688 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (6017 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.061493 s -[racon::Polisher::initialize] loaded sequences 0.064932 s -[racon::Polisher::initialize] loaded overlaps 0.017431 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.825046 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.409058 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.925037 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.617033 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.213035 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.637033 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.257024 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.997023 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.637024 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.313037 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.845020 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.601824 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.329075 s [racon::Polisher::initialize] aligning overlaps [==============> ] 8.885022 s [racon::Polisher::initialize] aligning overlaps [===============> ] 9.665657 s [racon::Polisher::initialize] aligning overlaps [================> ] 10.377643 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.041649 s [racon::Polisher::initialize] aligning overlaps [==================> ] 11.757601 s [racon::Polisher::initialize] aligning overlaps [===================>] 12.461609 s [racon::Polisher::initialize] aligning overlaps [====================] 13.018560 s -[racon::Polisher::initialize] transformed data into windows 0.074236 s -[racon::Polisher::polish] generating consensus [=> ] 15.693939 s [racon::Polisher::polish] generating consensus [==> ] 29.003186 s [racon::Polisher::polish] generating consensus [===> ] 39.646656 s [racon::Polisher::polish] generating consensus [====> ] 48.238592 s [racon::Polisher::polish] generating consensus [=====> ] 57.301938 s [racon::Polisher::polish] generating consensus [======> ] 68.022646 s [racon::Polisher::polish] generating consensus [=======> ] 78.806562 s [racon::Polisher::polish] generating consensus [========> ] 87.730615 s [racon::Polisher::polish] generating consensus [=========> ] 98.238603 s [racon::Polisher::polish] generating consensus [==========> ] 109.730120 s [racon::Polisher::polish] generating consensus [===========> ] 118.810163 s [racon::Polisher::polish] generating consensus [============> ] 130.057970 s [racon::Polisher::polish] generating consensus [=============> ] 139.209935 s [racon::Polisher::polish] generating consensus [==============> ] 148.797907 s [racon::Polisher::polish] generating consensus [===============> ] 158.729951 s [racon::Polisher::polish] generating consensus [================> ] 164.605993 s [racon::Polisher::polish] generating consensus [=================> ] 174.897929 s [racon::Polisher::polish] generating consensus [==================> ] 185.041972 s [racon::Polisher::polish] generating consensus [===================>] 194.877918 s [racon::Polisher::polish] generating consensus [====================] 203.418453 s -[racon::Polisher::] total = 216.662762 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (216703 ms) +[racon::Polisher::initialize] loaded target sequences 0.086284 s +[racon::Polisher::initialize] loaded sequences 0.089497 s +[racon::Polisher::initialize] loaded overlaps 0.024530 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.921280 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.589265 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.193266 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.925268 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.541278 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.977263 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.573256 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.322448 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.001267 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.701262 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.237245 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.005268 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.773264 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.405260 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.285280 s [racon::Polisher::initialize] aligning overlaps [================> ] 11.073259 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.769255 s [racon::Polisher::initialize] aligning overlaps [==================> ] 12.537264 s [racon::Polisher::initialize] aligning overlaps [===================>] 13.365508 s [racon::Polisher::initialize] aligning overlaps [====================] 13.977547 s +[racon::Polisher::initialize] transformed data into windows 0.228121 s +[racon::Polisher::polish] generating consensus [=> ] 17.947268 s [racon::Polisher::polish] generating consensus [==> ] 30.939003 s [racon::Polisher::polish] generating consensus [===> ] 45.303073 s [racon::Polisher::polish] generating consensus [====> ] 56.951075 s [racon::Polisher::polish] generating consensus [=====> ] 69.363023 s [racon::Polisher::polish] generating consensus [======> ] 84.591023 s [racon::Polisher::polish] generating consensus [=======> ] 99.879050 s [racon::Polisher::polish] generating consensus [========> ] 111.131269 s [racon::Polisher::polish] generating consensus [=========> ] 129.410971 s [racon::Polisher::polish] generating consensus [==========> ] 150.040052 s [racon::Polisher::polish] generating consensus [===========> ] 165.939080 s [racon::Polisher::polish] generating consensus [============> ] 183.408025 s [racon::Polisher::polish] generating consensus [=============> ] 199.575928 s [racon::Polisher::polish] generating consensus [==============> ] 217.514974 s [racon::Polisher::polish] generating consensus [===============> ] 236.907757 s [racon::Polisher::polish] generating consensus [================> ] 247.639883 s [racon::Polisher::polish] generating consensus [=================> ] 266.147833 s [racon::Polisher::polish] generating consensus [==================> ] 282.291069 s [racon::Polisher::polish] generating consensus [===================>] 301.782983 s [racon::Polisher::polish] generating consensus [====================] 315.825197 s +[racon::Polisher::] total = 330.240084 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (330252 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.029733 s -[racon::Polisher::initialize] loaded sequences 0.029664 s -[racon::Polisher::initialize] loaded overlaps 0.016999 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.718644 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.178633 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.634655 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.270648 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.806654 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.190636 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.706647 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.370643 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.998653 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.591297 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.059282 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.730666 s [racon::Polisher::initialize] aligning overlaps [=============> ] 7.406646 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.994636 s [racon::Polisher::initialize] aligning overlaps [===============> ] 8.738649 s [racon::Polisher::initialize] aligning overlaps [================> ] 9.446640 s [racon::Polisher::initialize] aligning overlaps [=================> ] 10.154635 s [racon::Polisher::initialize] aligning overlaps [==================> ] 10.858639 s [racon::Polisher::initialize] aligning overlaps [===================>] 11.558634 s [racon::Polisher::initialize] aligning overlaps [====================] 12.174480 s -[racon::Polisher::initialize] transformed data into windows 0.024243 s -[racon::Polisher::polish] generating consensus [=> ] 16.293522 s [racon::Polisher::polish] generating consensus [==> ] 28.989550 s [racon::Polisher::polish] generating consensus [===> ] 41.601584 s [racon::Polisher::polish] generating consensus [====> ] 51.485610 s [racon::Polisher::polish] generating consensus [=====> ] 62.629521 s [racon::Polisher::polish] generating consensus [======> ] 75.273549 s [racon::Polisher::polish] generating consensus [=======> ] 93.597813 s [racon::Polisher::polish] generating consensus [========> ] 106.622261 s [racon::Polisher::polish] generating consensus [=========> ] 121.049510 s [racon::Polisher::polish] generating consensus [==========> ] 137.673515 s [racon::Polisher::polish] generating consensus [===========> ] 150.617725 s [racon::Polisher::polish] generating consensus [============> ] 165.879291 s [racon::Polisher::polish] generating consensus [=============> ] 180.835444 s [racon::Polisher::polish] generating consensus [==============> ] 195.662204 s [racon::Polisher::polish] generating consensus [===============> ] 210.329650 s [racon::Polisher::polish] generating consensus [================> ] 217.958206 s [racon::Polisher::polish] generating consensus [=================> ] 235.722213 s [racon::Polisher::polish] generating consensus [==================> ] 252.221601 s [racon::Polisher::polish] generating consensus [===================>] 267.577525 s [racon::Polisher::polish] generating consensus [====================] 284.764121 s -[racon::Polisher::] total = 297.044022 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (297085 ms) +[racon::Polisher::initialize] loaded target sequences 0.052479 s +[racon::Polisher::initialize] loaded sequences 0.053325 s +[racon::Polisher::initialize] loaded overlaps 0.025819 s +[racon::Polisher::initialize] aligning overlaps [=> ] 1.169636 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.789745 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.417868 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.141693 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.945809 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.389580 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.969557 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.972793 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.769752 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.653787 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.485580 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.489532 s [racon::Polisher::initialize] aligning overlaps [=============> ] 10.436989 s [racon::Polisher::initialize] aligning overlaps [==============> ] 11.157993 s [racon::Polisher::initialize] aligning overlaps [===============> ] 11.989747 s [racon::Polisher::initialize] aligning overlaps [================> ] 12.733640 s [racon::Polisher::initialize] aligning overlaps [=================> ] 13.493688 s [racon::Polisher::initialize] aligning overlaps [==================> ] 14.509725 s [racon::Polisher::initialize] aligning overlaps [===================>] 15.401725 s [racon::Polisher::initialize] aligning overlaps [====================] 16.026035 s +[racon::Polisher::initialize] transformed data into windows 0.041727 s +[racon::Polisher::polish] generating consensus [=> ] 25.416309 s [racon::Polisher::polish] generating consensus [==> ] 51.056783 s [racon::Polisher::polish] generating consensus [===> ] 73.972373 s [racon::Polisher::polish] generating consensus [====> ] 90.489415 s [racon::Polisher::polish] generating consensus [=====> ] 109.161222 s [racon::Polisher::polish] generating consensus [======> ] 133.918249 s [racon::Polisher::polish] generating consensus [=======> ] 163.497252 s [racon::Polisher::polish] generating consensus [========> ] 181.504293 s [racon::Polisher::polish] generating consensus [=========> ] 206.489350 s [racon::Polisher::polish] generating consensus [==========> ] 230.684349 s [racon::Polisher::polish] generating consensus [===========> ] 251.300396 s [racon::Polisher::polish] generating consensus [============> ] 272.100385 s [racon::Polisher::polish] generating consensus [=============> ] 291.724344 s [racon::Polisher::polish] generating consensus [==============> ] 312.144358 s [racon::Polisher::polish] generating consensus [===============> ] 332.648338 s [racon::Polisher::polish] generating consensus [================> ] 343.648370 s [racon::Polisher::polish] generating consensus [=================> ] 369.404323 s [racon::Polisher::polish] generating consensus [==================> ] 400.468382 s [racon::Polisher::polish] generating consensus [===================>] 422.441300 s [racon::Polisher::polish] generating consensus [====================] 443.040211 s +[racon::Polisher::] total = 459.247004 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (459260 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.064322 s -[racon::Polisher::initialize] loaded sequences 0.062558 s -[racon::Polisher::initialize] loaded overlaps 0.017223 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.915893 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.542250 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.185605 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.961629 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.750244 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.234175 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.846188 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.633934 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.598195 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.425625 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.022013 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.029886 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.921611 s [racon::Polisher::initialize] aligning overlaps [==============> ] 10.641599 s [racon::Polisher::initialize] aligning overlaps [===============> ] 11.425620 s [racon::Polisher::initialize] aligning overlaps [================> ] 12.157590 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.762154 s [racon::Polisher::initialize] aligning overlaps [==================> ] 13.569597 s [racon::Polisher::initialize] aligning overlaps [===================>] 14.369598 s [racon::Polisher::initialize] aligning overlaps [====================] 14.547381 s -[racon::Polisher::initialize] transformed data into windows 0.072703 s -[racon::Polisher::polish] generating consensus [=> ] 11.819410 s [racon::Polisher::polish] generating consensus [==> ] 20.179398 s [racon::Polisher::polish] generating consensus [===> ] 29.235243 s [racon::Polisher::polish] generating consensus [====> ] 36.783239 s [racon::Polisher::polish] generating consensus [=====> ] 44.823182 s [racon::Polisher::polish] generating consensus [======> ] 54.815201 s [racon::Polisher::polish] generating consensus [=======> ] 64.595206 s [racon::Polisher::polish] generating consensus [========> ] 71.639195 s [racon::Polisher::polish] generating consensus [=========> ] 80.579182 s [racon::Polisher::polish] generating consensus [==========> ] 91.251184 s [racon::Polisher::polish] generating consensus [===========> ] 99.907244 s [racon::Polisher::polish] generating consensus [============> ] 109.839251 s [racon::Polisher::polish] generating consensus [=============> ] 118.527195 s [racon::Polisher::polish] generating consensus [==============> ] 127.671195 s [racon::Polisher::polish] generating consensus [===============> ] 137.699200 s [racon::Polisher::polish] generating consensus [================> ] 143.211255 s [racon::Polisher::polish] generating consensus [=================> ] 154.219201 s [racon::Polisher::polish] generating consensus [==================> ] 166.383874 s [racon::Polisher::polish] generating consensus [===================>] 180.155207 s [racon::Polisher::polish] generating consensus [====================] 190.564566 s -[racon::Polisher::] total = 205.335519 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (205373 ms) -[----------] 10 tests from RaconPolishingTest (780121 ms total) +[racon::Polisher::initialize] loaded target sequences 0.087689 s +[racon::Polisher::initialize] loaded sequences 0.088896 s +[racon::Polisher::initialize] loaded overlaps 0.022489 s +[racon::Polisher::initialize] aligning overlaps [=> ] 1.040333 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.952364 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.456624 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.189422 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.833248 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.297172 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.924273 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.701221 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.549934 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.368588 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.952309 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.741162 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.537276 s [racon::Polisher::initialize] aligning overlaps [==============> ] 10.227487 s [racon::Polisher::initialize] aligning overlaps [===============> ] 11.207905 s [racon::Polisher::initialize] aligning overlaps [================> ] 12.061422 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.917420 s [racon::Polisher::initialize] aligning overlaps [==================> ] 13.864334 s [racon::Polisher::initialize] aligning overlaps [===================>] 14.836306 s [racon::Polisher::initialize] aligning overlaps [====================] 15.528240 s +[racon::Polisher::initialize] transformed data into windows 0.242680 s +[racon::Polisher::polish] generating consensus [=> ] 27.633756 s [racon::Polisher::polish] generating consensus [==> ] 58.316333 s [racon::Polisher::polish] generating consensus [===> ] 93.601133 s [racon::Polisher::polish] generating consensus [====> ] 110.133695 s [racon::Polisher::polish] generating consensus [=====> ] 124.988679 s [racon::Polisher::polish] generating consensus [======> ] 149.525186 s [racon::Polisher::polish] generating consensus [=======> ] 177.449649 s [racon::Polisher::polish] generating consensus [========> ] 188.960727 s [racon::Polisher::polish] generating consensus [=========> ] 204.980692 s [racon::Polisher::polish] generating consensus [==========> ] 234.384793 s [racon::Polisher::polish] generating consensus [===========> ] 270.481274 s [racon::Polisher::polish] generating consensus [============> ] 301.697100 s [racon::Polisher::polish] generating consensus [=============> ] 336.509164 s [racon::Polisher::polish] generating consensus [==============> ] 359.089366 s [racon::Polisher::polish] generating consensus [===============> ] 387.684745 s [racon::Polisher::polish] generating consensus [================> ] 405.748727 s [racon::Polisher::polish] generating consensus [=================> ] 436.560736 s [racon::Polisher::polish] generating consensus [==================> ] 455.257754 s [racon::Polisher::polish] generating consensus [===================>] 470.700736 s [racon::Polisher::polish] generating consensus [====================] 481.727219 s +[racon::Polisher::] total = 497.704261 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (497717 ms) +[----------] 10 tests from RaconPolishingTest (1397279 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (780153 ms total) +[==========] 15 tests from 2 test suites ran. (1397296 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake - cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -758,12 +794,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/11751/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/11751/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/630 and its subdirectories -I: Current time: Tue Dec 3 18:47:45 -12 2024 -I: pbuilder-time-stamp: 1733294865 +I: removing directory /srv/workspace/pbuilder/11751 and its subdirectories +I: Current time: Wed Dec 4 21:14:07 +14 2024 +I: pbuilder-time-stamp: 1733296447