Diff of the two buildlogs: -- --- b1/build.log 2025-01-16 15:26:33.208985618 +0000 +++ b2/build.log 2025-01-16 15:28:29.431706911 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jan 16 03:15:08 -12 2025 -I: pbuilder-time-stamp: 1737040508 +I: Current time: Fri Jan 17 05:26:41 +14 2025 +I: pbuilder-time-stamp: 1737041201 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/17194/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/30338/tmp/hooks/D01_modify_environment starting +debug: Running on virt64z. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 16 15:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/30338/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/30338/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='ba12dda65b5c40dd976b40384a8ba5eb' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='17194' - PS1='# ' - PS2='> ' + INVOCATION_ID=9008c617d81f4c24accc2bf186519e6a + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=30338 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pIDHtJh2/pbuilderrc_TqG6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pIDHtJh2/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-5.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pIDHtJh2/pbuilderrc_fbNW --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pIDHtJh2/b2 --logfile b2/build.log ruby-crb-blast_0.6.9-5.dsc' + SUDO_GID=110 + SUDO_UID=103 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux cbxi4a 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/17194/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/30338/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -292,7 +324,7 @@ Get: 161 http://deb.debian.org/debian trixie/main armhf ruby-shoulda all 4.0.0-3 [6352 B] Get: 162 http://deb.debian.org/debian trixie/main armhf ruby-threach all 0.2.0-2 [5320 B] Get: 163 http://deb.debian.org/debian trixie/main armhf ruby-trollop all 2.0-2.1 [17.0 kB] -Fetched 64.5 MB in 8s (8390 kB/s) +Fetched 64.5 MB in 6s (11.3 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19566 files and directories currently installed.) @@ -838,8 +870,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Jan 16 15:19:59 UTC 2025. -Universal Time is now: Thu Jan 16 15:19:59 UTC 2025. +Local time is now: Thu Jan 16 15:27:33 UTC 2025. +Universal Time is now: Thu Jan 16 15:27:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -981,7 +1013,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes +I: user script /srv/workspace/pbuilder/30338/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/30338/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable @@ -1060,38 +1096,38 @@ Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (9.754418) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (9.279889) - test: crb-blast should break input file into pieces. :.: (9.849776) - test: crb-blast should find reciprocals. : .: (10.960039) - test: crb-blast should get non reciprocal hits. : .: (7.895818) - test: crb-blast should load output should check if the databases exist. : .: (7.656338) - test: crb-blast should run blast should check if the databases exist yet. : .: (7.444090) - test: crb-blast should setup2 should run ok. : .: (7.147116) + test: crb-blast should add secondary hits. : .: (1.098616) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (1.087554) + test: crb-blast should break input file into pieces. :.: (1.101898) + test: crb-blast should find reciprocals. : .: (1.069719) + test: crb-blast should get non reciprocal hits. : .: (1.106044) + test: crb-blast should load output should check if the databases exist. : .: (1.115856) + test: crb-blast should run blast should check if the databases exist yet. : .: (1.101269) + test: crb-blast should setup2 should run ok. : .: (1.082524) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.012508) - test: crb-blast should run. : .: (8.107276) - test: crb-blast should work for query sequences with pipes. : .: (6.537424) + test: crb-blast should raise error when files don't exist. : .: (0.002996) + test: crb-blast should run. : .: (1.289014) + test: crb-blast should work for query sequences with pipes. : .: (0.971900) TestBinary: - test: crb-blast should run binary. : .: (2.067312) + test: crb-blast should run binary. : .: (0.328760) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (7.579899) - test: crb-blast should determine that the target is a protein sequence. : .: (7.546418) - test: crb-blast should find reciprocals. : .: (8.062021) - test: crb-blast should get number of reciprocals. : .: (8.033591) - test: crb-blast should get query results. : .: (7.740883) - test: crb-blast should load outputs. : .: (9.735533) - test: crb-blast should not find fake scaffold name. : .: (9.047899) - test: crb-blast should output all reciprocal hits. : .: (7.456493) - test: crb-blast should run blast. : .: (8.253898) - test: crb-blast should setup should run ok. : .: (7.996175) + test: crb-blast should check if contig has reciprocal hit. : .: (1.185759) + test: crb-blast should determine that the target is a protein sequence. : .: (1.160265) + test: crb-blast should find reciprocals. : .: (1.166493) + test: crb-blast should get number of reciprocals. : .: (1.145097) + test: crb-blast should get query results. : .: (1.129472) + test: crb-blast should load outputs. : .: (1.201395) + test: crb-blast should not find fake scaffold name. : .: (1.177064) + test: crb-blast should output all reciprocal hits. : .: (1.128377) + test: crb-blast should run blast. : .: (1.215562) + test: crb-blast should setup should run ok. : .: (1.214466) -Finished in 168.247243888 seconds. +Finished in 23.091169183 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -0.13 tests/s, 0.25 assertions/s +0.95 tests/s, 1.82 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ @@ -1122,12 +1158,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/30338/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/30338/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/17194 and its subdirectories -I: Current time: Thu Jan 16 03:26:28 -12 2025 -I: pbuilder-time-stamp: 1737041188 +I: removing directory /srv/workspace/pbuilder/30338 and its subdirectories +I: Current time: Fri Jan 17 05:28:25 +14 2025 +I: pbuilder-time-stamp: 1737041305