Diff of the two buildlogs:

--
--- b1/build.log	2024-11-07 06:09:52.651112641 +0000
+++ b2/build.log	2024-11-07 06:20:07.613321049 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Wed Nov  6 18:02:18 -12 2024
-I: pbuilder-time-stamp: 1730959338
+I: Current time: Thu Nov  7 20:10:24 +14 2024
+I: pbuilder-time-stamp: 1730959824
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
 I: copying local configuration
@@ -26,52 +26,84 @@
 dpkg-source: info: unpacking twopaco_1.0.0+dfsg-1.debian.tar.xz
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/18335/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/15882/tmp/hooks/D01_modify_environment starting
+debug: Running on ff4a.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Nov  7 06:11 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/15882/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/15882/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='armhf'
-  DEBIAN_FRONTEND='noninteractive'
-  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
-  DISTRIBUTION='trixie'
-  HOME='/root'
-  HOST_ARCH='armhf'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf")
+  BASH_VERSION='5.2.32(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=armhf
+  DEBIAN_FRONTEND=noninteractive
+  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 '
+  DIRSTACK=()
+  DISTRIBUTION=trixie
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=arm
+  HOST_ARCH=armhf
   IFS=' 	
   '
-  INVOCATION_ID='616b0282e22d425a9a4a589cec39bf80'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='18335'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=27d8bb67903544e694cd87bc0e8569a3
+  LANG=C
+  LANGUAGE=it_CH:it
+  LC_ALL=C
+  MACHTYPE=arm-unknown-linux-gnueabihf
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnueabihf
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=15882
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yb7urydR/pbuilderrc_5TU2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yb7urydR/b1 --logfile b1/build.log twopaco_1.0.0+dfsg-1.dsc'
-  SUDO_GID='113'
-  SUDO_UID='107'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://10.0.0.15:3142/'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yb7urydR/pbuilderrc_N1oa --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yb7urydR/b2 --logfile b2/build.log twopaco_1.0.0+dfsg-1.dsc'
+  SUDO_GID=113
+  SUDO_UID=107
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://10.0.0.15:3142/
 I: uname -a
-  Linux virt64c 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux
 I: ls -l /bin
   lrwxrwxrwx 1 root root 7 Aug  4 21:30 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/18335/tmp/hooks/D02_print_environment finished
+I: user script /srv/workspace/pbuilder/15882/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -172,7 +204,7 @@
 Get: 57 http://deb.debian.org/debian trixie/main armhf libtbb12 armhf 2021.12.0-1 [74.1 kB]
 Get: 58 http://deb.debian.org/debian trixie/main armhf libtbb-dev armhf 2021.12.0-1 [193 kB]
 Get: 59 http://deb.debian.org/debian trixie/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB]
-Fetched 33.9 MB in 1s (41.9 MB/s)
+Fetched 33.9 MB in 3s (12.0 MB/s)
 debconf: delaying package configuration, since apt-utils is not installed
 Selecting previously unselected package libproc2-0:armhf.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19690 files and directories currently installed.)
@@ -423,7 +455,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../twopaco_1.0.0+dfsg-1_source.changes
+I: user script /srv/workspace/pbuilder/15882/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/15882/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/twopaco-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../twopaco_1.0.0+dfsg-1_source.changes
 dpkg-buildpackage: info: source package twopaco
 dpkg-buildpackage: info: source version 1.0.0+dfsg-1
 dpkg-buildpackage: info: source distribution unstable
@@ -453,7 +489,7 @@
 -- Check for working CXX compiler: /usr/bin/c++ - skipped
 -- Detecting CXX compile features
 -- Detecting CXX compile features - done
--- Configuring done (1.4s)
+-- Configuring done (5.1s)
 -- Generating done (0.0s)
 CMake Warning:
   Manually-specified variables were not used by the project:
@@ -470,7 +506,7 @@
 
 -- Build files have been written to: /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf
    dh_auto_build -O--sourcedir=src
-	cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1
+	cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
 make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf'
 /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
@@ -483,18 +519,22 @@
 make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf'
 cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/twopaco-1.0.0+dfsg/src /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor/CMakeFiles/twopaco.dir/DependInfo.cmake "--color="
 make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf'
+make  -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build
 make[3]: Leaving directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf'
 make  -f graphconstructor/CMakeFiles/twopaco.dir/build.make graphconstructor/CMakeFiles/twopaco.dir/build
-make  -f graphdump/CMakeFiles/graphdump.dir/build.make graphdump/CMakeFiles/graphdump.dir/build
 make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf'
 make[3]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf'
-[  7%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o
+[  7%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o
 [ 14%] Building CXX object graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o
-cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp
+cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp
 cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o -MF CMakeFiles/graphdump.dir/graphdump.cpp.o.d -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp
-[ 21%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o
+[ 28%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o
+[ 28%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o
+cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp
+cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -MF CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp
+[ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o
 cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/constructor.cpp.o -MF CMakeFiles/twopaco.dir/constructor.cpp.o.d -o CMakeFiles/twopaco.dir/constructor.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp
-[ 28%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o
+[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o
 cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -MF CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o.d -o CMakeFiles/twopaco.dir/concurrentbitvector.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/concurrentbitvector.cpp
 /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp: In function ‘void GenerateFastaOutput(const std::string&, const std::vector<std::__cxx11::basic_string<char> >&, size_t)’:
 /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:519:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector<bool>::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow]
@@ -514,14 +554,16 @@
 /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:401:32: warning: unsigned conversion from ‘int64_t’ {aka ‘long long int’} to ‘std::vector<bool>::size_type’ {aka ‘unsigned int’} changes value from ‘34359738368’ to ‘0’ [-Woverflow]
   401 |         std::vector<bool> seen(MAX_SEGMENT_NUMBER, 0);
       |                                ^~~~~~~~~~~~~~~~~~
-[ 35%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o
+[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o
 cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/compressedstring.cpp.o -MF CMakeFiles/twopaco.dir/compressedstring.cpp.o.d -o CMakeFiles/twopaco.dir/compressedstring.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/compressedstring.cpp
+[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o
+cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp
+[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o
+cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp
 /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp: In function ‘int main(int, char**)’:
 /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/constructor.cpp:112:25: warning: conversion from ‘long long unsigned int’ to ‘unsigned int’ changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow]
   112 |                         UINT64_MAX,
       |                         ^~~~~~~~~~
-[ 42%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o
-cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp
 In file included from /usr/include/c++/14/algorithm:61,
                  from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:11:
 /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<TwoPaCo::JunctionPosition*, vector<TwoPaCo::JunctionPosition> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const TwoPaCo::JunctionPosition&, const TwoPaCo::JunctionPosition&)>]’:
@@ -536,14 +578,16 @@
 /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<TwoPaCo::JunctionPosition*, vector<TwoPaCo::JunctionPosition> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const TwoPaCo::JunctionPosition&, const TwoPaCo::JunctionPosition&)>]’:
 /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TwoPaCo::JunctionPosition*, std::vector<TwoPaCo::JunctionPosition> >’ changed in GCC 7.1
 /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TwoPaCo::JunctionPosition*, std::vector<TwoPaCo::JunctionPosition> >’ changed in GCC 7.1
-[ 50%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o
-cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/test.cpp.o -MF CMakeFiles/twopaco.dir/test.cpp.o.d -o CMakeFiles/twopaco.dir/test.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/test.cpp
+[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o
+cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp
 In file included from /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/graphdump.cpp:15:
 /usr/include/oneapi/tbb/parallel_sort.h: In function ‘void tbb::detail::d1::parallel_quick_sort(RandomAccessIterator, RandomAccessIterator, const Compare&) [with RandomAccessIterator = __gnu_cxx::__normal_iterator<EqClass*, std::vector<EqClass> >; Compare = bool(const EqClass&, const EqClass&)]’:
 /usr/include/oneapi/tbb/parallel_sort.h:186:6: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<EqClass*, std::vector<EqClass> >’ changed in GCC 7.1
   186 | void parallel_quick_sort( RandomAccessIterator begin, RandomAccessIterator end, const Compare& comp ) {
       |      ^~~~~~~~~~~~~~~~~~~
 /usr/include/oneapi/tbb/parallel_sort.h:186:6: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<EqClass*, std::vector<EqClass> >’ changed in GCC 7.1
+[ 78%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o
+cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp
 /usr/include/c++/14/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<EqClass*, vector<EqClass> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const EqClass&, const EqClass&)>]’:
 /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<EqClass*, std::vector<EqClass> >’ changed in GCC 7.1
  1750 |     __unguarded_linear_insert(_RandomAccessIterator __last,
@@ -665,10 +709,8 @@
 /usr/include/oneapi/tbb/parallel_sort.h:244:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<EqClass*, std::vector<EqClass> >’ changed in GCC 7.1
   244 |             parallel_quick_sort(begin, end, comp);
       |             ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
-[ 57%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o
-cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -MF CMakeFiles/twopaco.dir/vertexenumerator.cpp.o.d -o CMakeFiles/twopaco.dir/vertexenumerator.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/vertexenumerator.cpp
-[ 64%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o
-cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -MF CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o.d -o CMakeFiles/twopaco.dir/__/common/spooky/SpookyV2.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/spooky/SpookyV2.cpp
+[ 85%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o
+cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp
 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<EqClass*, vector<EqClass> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const EqClass&, const EqClass&)>]’,
     inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator<EqClass*, vector<EqClass> >; _Compare = bool (*)(const EqClass&, const EqClass&)]’ at /usr/include/c++/14/bits/stl_algo.h:4804:18,
     inlined from ‘void tbb::detail::d1::quick_sort_body<RandomAccessIterator, Compare>::operator()(const tbb::detail::d1::quick_sort_range<RandomAccessIterator, Compare>&) const [with RandomAccessIterator = __gnu_cxx::__normal_iterator<EqClass*, std::vector<EqClass> >; Compare = bool(const EqClass&, const EqClass&)]’ at /usr/include/oneapi/tbb/parallel_sort.h:170:18,
@@ -721,12 +763,6 @@
 /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<EqClass*, std::vector<EqClass> >’ changed in GCC 7.1
  1822 |         std::__insertion_sort(__first, __last, __comp);
       |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
-[ 71%] Building CXX object graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o
-cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphconstructor && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphconstructor/CMakeFiles/twopaco.dir/common.cpp.o -MF CMakeFiles/twopaco.dir/common.cpp.o.d -o CMakeFiles/twopaco.dir/common.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/graphconstructor/common.cpp
-[ 78%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o
-cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -MF CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/dnachar.cpp
-[ 85%] Building CXX object graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o
-cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/c++  -I/build/reproducible-path/twopaco-1.0.0+dfsg/src/graphdump/../common -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -MD -MT graphdump/CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -MF CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o.d -o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -c /build/reproducible-path/twopaco-1.0.0+dfsg/src/common/streamfastaparser.cpp
 [ 92%] Linking CXX executable graphdump
 cd /build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf/graphdump && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphdump.dir/link.txt --verbose=1
 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/twopaco-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro CMakeFiles/graphdump.dir/graphdump.cpp.o CMakeFiles/graphdump.dir/__/common/dnachar.cpp.o CMakeFiles/graphdump.dir/__/common/streamfastaparser.cpp.o -o graphdump  -ltbb -lpthread
@@ -2461,2621 +2497,774 @@
    debian/rules override_dh_auto_test
 make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg'
 obj-*/graphconstructor/twopaco --test -f 34 example/example.fa
-ERROR at chr 0 pos 8, 1 != 0
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-ERROR at chr 0 pos 159, 1 != 0
-ERROR at chr 0 pos 179, 1 != 0
-ERROR at chr 0 pos 223, 1 != 0
-ERROR at chr 0 pos 228, 1 != 0
-ERROR at chr 0 pos 241, 1 != 0
-ERROR at chr 0 pos 248, 1 != 0
+ERROR at chr 0 pos 32, 1 != 0
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+ERROR at chr 0 pos 142, 1 != 0
+ERROR at chr 0 pos 256, 1 != 0
 ERROR at chr 0 pos 265, 1 != 0
-ERROR at chr 0 pos 309, 1 != 0
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-ERROR at chr 0 pos 388, 1 != 0
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-ERROR at chr 0 pos 2203, 1 != 0
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-ERROR at chr 0 pos 2290, 1 != 0
-ERROR at chr 0 pos 2301, 1 != 0
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 ERROR at chr 0 pos 2851, 1 != 0
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 ERROR at chr 0 pos 4752, 1 != 0
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 ERROR at chr 0 pos 5240, 1 != 0
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 ERROR at chr 0 pos 7970, 1 != 0
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 ERROR at chr 1 pos 251, 1 != 0
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 ERROR at chr 1 pos 4508, 1 != 0
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 ERROR at chr 1 pos 5266, 1 != 0
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-ERROR at chr 1 pos 6910, 1 != 0
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 ERROR at chr 1 pos 7952, 1 != 0
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 ERROR at chr 1 pos 8835, 1 != 0
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 ERROR at chr 2 pos 2538, 1 != 0
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 ERROR at chr 2 pos 4422, 1 != 0
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 ERROR at chr 2 pos 4694, 1 != 0
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 ERROR at chr 2 pos 7187, 1 != 0
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 ERROR at chr 3 pos 576, 1 != 0
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 ERROR at chr 3 pos 1526, 1 != 0
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 ERROR at chr 3 pos 2107, 1 != 0
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 ERROR at chr 3 pos 2183, 1 != 0
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 ERROR at chr 3 pos 3502, 1 != 0
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 ERROR at chr 3 pos 6070, 1 != 0
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 ERROR at chr 3 pos 6409, 1 != 0
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 ERROR at chr 3 pos 7980, 1 != 0
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 ERROR at chr 3 pos 8694, 1 != 0
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 ERROR at chr 4 pos 3292, 1 != 0
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 ERROR at chr 4 pos 5835, 1 != 0
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 ERROR at chr 4 pos 6159, 1 != 0
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 ERROR at chr 4 pos 6917, 1 != 0
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 ERROR at chr 4 pos 6984, 1 != 0
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 ERROR at chr 5 pos 3912, 1 != 0
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-ERROR at chr 5 pos 4782, 1 != 0
-ERROR at chr 5 pos 4799, 1 != 0
-ERROR at chr 5 pos 4804, 1 != 0
-ERROR at chr 5 pos 4832, 1 != 0
-ERROR at chr 5 pos 4852, 1 != 0
-ERROR at chr 5 pos 4858, 1 != 0
-ERROR at chr 5 pos 4873, 1 != 0
-ERROR at chr 5 pos 4874, 1 != 0
-ERROR at chr 5 pos 4888, 1 != 0
-ERROR at chr 5 pos 4986, 1 != 0
-ERROR at chr 5 pos 5025, 1 != 0
-ERROR at chr 5 pos 5034, 1 != 0
-ERROR at chr 5 pos 5047, 1 != 0
-ERROR at chr 5 pos 5049, 1 != 0
-ERROR at chr 5 pos 5071, 1 != 0
-ERROR at chr 5 pos 5082, 1 != 0
-ERROR at chr 5 pos 5100, 1 != 0
-ERROR at chr 5 pos 5158, 1 != 0
-ERROR at chr 5 pos 5216, 1 != 0
-ERROR at chr 5 pos 5217, 1 != 0
-ERROR at chr 5 pos 5228, 1 != 0
-ERROR at chr 5 pos 5253, 1 != 0
-ERROR at chr 5 pos 5256, 1 != 0
-ERROR at chr 5 pos 5259, 1 != 0
-ERROR at chr 5 pos 5272, 1 != 0
-ERROR at chr 5 pos 5279, 1 != 0
-ERROR at chr 5 pos 5280, 1 != 0
-ERROR at chr 5 pos 5306, 1 != 0
-ERROR at chr 5 pos 5333, 1 != 0
-ERROR at chr 5 pos 5344, 1 != 0
-ERROR at chr 5 pos 5352, 1 != 0
-ERROR at chr 5 pos 5367, 1 != 0
-ERROR at chr 5 pos 5395, 1 != 0
-ERROR at chr 5 pos 5396, 1 != 0
-ERROR at chr 5 pos 5399, 1 != 0
-ERROR at chr 5 pos 5401, 1 != 0
-ERROR at chr 5 pos 5440, 1 != 0
-ERROR at chr 5 pos 5508, 1 != 0
-ERROR at chr 5 pos 5518, 1 != 0
-ERROR at chr 5 pos 5528, 1 != 0
-ERROR at chr 5 pos 5553, 1 != 0
-ERROR at chr 5 pos 5555, 1 != 0
-ERROR at chr 5 pos 5561, 1 != 0
-ERROR at chr 5 pos 5647, 1 != 0
-ERROR at chr 5 pos 5652, 1 != 0
-ERROR at chr 5 pos 5663, 1 != 0
-ERROR at chr 5 pos 5665, 1 != 0
-ERROR at chr 5 pos 5677, 1 != 0
-ERROR at chr 5 pos 5741, 1 != 0
-ERROR at chr 5 pos 5791, 1 != 0
-ERROR at chr 5 pos 5800, 1 != 0
-ERROR at chr 5 pos 5845, 1 != 0
-ERROR at chr 5 pos 5856, 1 != 0
-ERROR at chr 5 pos 5868, 1 != 0
-ERROR at chr 5 pos 5872, 1 != 0
-ERROR at chr 5 pos 5907, 1 != 0
-ERROR at chr 5 pos 5910, 1 != 0
-ERROR at chr 5 pos 5921, 1 != 0
-ERROR at chr 5 pos 5924, 1 != 0
-ERROR at chr 5 pos 5925, 1 != 0
-ERROR at chr 5 pos 5941, 1 != 0
-ERROR at chr 5 pos 5944, 1 != 0
-ERROR at chr 5 pos 5977, 1 != 0
-ERROR at chr 5 pos 5999, 1 != 0
-ERROR at chr 5 pos 6002, 1 != 0
-ERROR at chr 5 pos 6005, 1 != 0
-ERROR at chr 5 pos 6011, 1 != 0
-ERROR at chr 5 pos 6022, 1 != 0
-ERROR at chr 5 pos 6023, 1 != 0
-ERROR at chr 5 pos 6066, 1 != 0
-ERROR at chr 5 pos 6094, 1 != 0
-ERROR at chr 5 pos 6100, 1 != 0
-ERROR at chr 5 pos 6109, 1 != 0
-ERROR at chr 5 pos 6117, 1 != 0
+ERROR at chr 5 pos 3948, 1 != 0
+ERROR at chr 5 pos 3967, 1 != 0
+ERROR at chr 5 pos 4150, 1 != 0
+ERROR at chr 5 pos 4153, 1 != 0
+ERROR at chr 5 pos 4276, 1 != 0
+ERROR at chr 5 pos 4375, 1 != 0
+ERROR at chr 5 pos 4424, 1 != 0
+ERROR at chr 5 pos 4452, 1 != 0
+ERROR at chr 5 pos 4499, 1 != 0
+ERROR at chr 5 pos 4557, 1 != 0
+ERROR at chr 5 pos 4598, 1 != 0
+ERROR at chr 5 pos 4623, 1 != 0
+ERROR at chr 5 pos 4692, 1 != 0
+ERROR at chr 5 pos 4698, 1 != 0
+ERROR at chr 5 pos 4699, 1 != 0
+ERROR at chr 5 pos 4740, 1 != 0
+ERROR at chr 5 pos 4807, 1 != 0
+ERROR at chr 5 pos 5176, 1 != 0
+ERROR at chr 5 pos 5190, 1 != 0
+ERROR at chr 5 pos 5224, 1 != 0
+ERROR at chr 5 pos 5339, 1 != 0
+ERROR at chr 5 pos 5462, 1 != 0
+ERROR at chr 5 pos 5463, 1 != 0
+ERROR at chr 5 pos 5478, 1 != 0
+ERROR at chr 5 pos 5482, 1 != 0
+ERROR at chr 5 pos 5494, 1 != 0
+ERROR at chr 5 pos 5538, 1 != 0
+ERROR at chr 5 pos 5552, 1 != 0
+ERROR at chr 5 pos 5557, 1 != 0
+ERROR at chr 5 pos 5673, 1 != 0
+ERROR at chr 5 pos 5694, 1 != 0
+ERROR at chr 5 pos 5742, 1 != 0
+ERROR at chr 5 pos 5805, 1 != 0
+ERROR at chr 5 pos 5839, 1 != 0
+ERROR at chr 5 pos 6063, 1 != 0
 ERROR at chr 5 pos 6118, 1 != 0
-ERROR at chr 5 pos 6136, 1 != 0
-ERROR at chr 5 pos 6170, 1 != 0
-ERROR at chr 5 pos 6171, 1 != 0
-ERROR at chr 5 pos 6239, 1 != 0
-ERROR at chr 5 pos 6307, 1 != 0
-ERROR at chr 5 pos 6309, 1 != 0
-ERROR at chr 5 pos 6311, 1 != 0
-ERROR at chr 5 pos 6332, 1 != 0
-ERROR at chr 5 pos 6345, 1 != 0
-ERROR at chr 5 pos 6399, 1 != 0
-ERROR at chr 5 pos 6413, 1 != 0
-ERROR at chr 5 pos 6428, 1 != 0
-ERROR at chr 5 pos 6429, 1 != 0
-ERROR at chr 5 pos 6437, 1 != 0
-ERROR at chr 5 pos 6455, 1 != 0
-ERROR at chr 5 pos 6495, 1 != 0
-ERROR at chr 5 pos 6497, 1 != 0
-ERROR at chr 5 pos 6503, 1 != 0
-ERROR at chr 5 pos 6576, 1 != 0
-ERROR at chr 5 pos 6586, 1 != 0
-ERROR at chr 5 pos 6592, 1 != 0
-ERROR at chr 5 pos 6617, 1 != 0
-ERROR at chr 5 pos 6621, 1 != 0
-ERROR at chr 5 pos 6628, 1 != 0
-ERROR at chr 5 pos 6658, 1 != 0
-ERROR at chr 5 pos 6665, 1 != 0
-ERROR at chr 5 pos 6687, 1 != 0
-ERROR at chr 5 pos 6721, 1 != 0
-ERROR at chr 5 pos 6747, 1 != 0
-ERROR at chr 5 pos 6748, 1 != 0
-ERROR at chr 5 pos 6749, 1 != 0
-ERROR at chr 5 pos 6784, 1 != 0
-ERROR at chr 5 pos 6895, 1 != 0
-ERROR at chr 5 pos 6913, 1 != 0
-ERROR at chr 5 pos 6966, 1 != 0
-ERROR at chr 5 pos 6997, 1 != 0
-ERROR at chr 5 pos 7049, 1 != 0
-ERROR at chr 5 pos 7081, 1 != 0
-ERROR at chr 5 pos 7088, 1 != 0
-ERROR at chr 5 pos 7089, 1 != 0
-ERROR at chr 5 pos 7121, 1 != 0
-ERROR at chr 5 pos 7166, 1 != 0
-ERROR at chr 5 pos 7173, 1 != 0
-ERROR at chr 5 pos 7204, 1 != 0
-ERROR at chr 5 pos 7206, 1 != 0
-ERROR at chr 5 pos 7210, 1 != 0
-ERROR at chr 5 pos 7230, 1 != 0
-ERROR at chr 5 pos 7233, 1 != 0
-ERROR at chr 5 pos 7291, 1 != 0
-ERROR at chr 5 pos 7296, 1 != 0
-ERROR at chr 5 pos 7305, 1 != 0
-ERROR at chr 5 pos 7319, 1 != 0
-ERROR at chr 5 pos 7323, 1 != 0
-ERROR at chr 5 pos 7328, 1 != 0
-ERROR at chr 5 pos 7349, 1 != 0
-ERROR at chr 5 pos 7370, 1 != 0
-ERROR at chr 5 pos 7372, 1 != 0
-ERROR at chr 5 pos 7376, 1 != 0
-ERROR at chr 5 pos 7377, 1 != 0
-ERROR at chr 5 pos 7415, 1 != 0
-ERROR at chr 5 pos 7436, 1 != 0
+ERROR at chr 5 pos 6119, 1 != 0
+ERROR at chr 5 pos 6157, 1 != 0
+ERROR at chr 5 pos 6184, 1 != 0
+ERROR at chr 5 pos 6269, 1 != 0
+ERROR at chr 5 pos 6283, 1 != 0
+ERROR at chr 5 pos 6340, 1 != 0
+ERROR at chr 5 pos 6600, 1 != 0
+ERROR at chr 5 pos 6714, 1 != 0
+ERROR at chr 5 pos 6801, 1 != 0
+ERROR at chr 5 pos 6824, 1 != 0
+ERROR at chr 5 pos 6827, 1 != 0
+ERROR at chr 5 pos 6984, 1 != 0
+ERROR at chr 5 pos 6985, 1 != 0
+ERROR at chr 5 pos 7004, 1 != 0
+ERROR at chr 5 pos 7008, 1 != 0
+ERROR at chr 5 pos 7051, 1 != 0
+ERROR at chr 5 pos 7107, 1 != 0
+ERROR at chr 5 pos 7113, 1 != 0
+ERROR at chr 5 pos 7181, 1 != 0
+ERROR at chr 5 pos 7243, 1 != 0
+ERROR at chr 5 pos 7286, 1 != 0
+ERROR at chr 5 pos 7327, 1 != 0
+ERROR at chr 5 pos 7458, 1 != 0
+ERROR at chr 5 pos 7486, 1 != 0
 ERROR at chr 5 pos 7506, 1 != 0
-ERROR at chr 5 pos 7532, 1 != 0
-ERROR at chr 5 pos 7560, 1 != 0
-ERROR at chr 5 pos 7593, 1 != 0
-ERROR at chr 5 pos 7596, 1 != 0
-ERROR at chr 5 pos 7606, 1 != 0
-ERROR at chr 5 pos 7653, 1 != 0
-ERROR at chr 5 pos 7663, 1 != 0
-ERROR at chr 5 pos 7714, 1 != 0
-ERROR at chr 5 pos 7741, 1 != 0
-ERROR at chr 5 pos 7769, 1 != 0
-ERROR at chr 5 pos 7773, 1 != 0
-ERROR at chr 5 pos 7799, 1 != 0
-ERROR at chr 5 pos 7817, 1 != 0
-ERROR at chr 5 pos 7850, 1 != 0
-ERROR at chr 5 pos 7861, 1 != 0
-ERROR at chr 5 pos 7863, 1 != 0
-ERROR at chr 5 pos 7926, 1 != 0
-ERROR at chr 5 pos 7930, 1 != 0
-ERROR at chr 5 pos 7952, 1 != 0
-ERROR at chr 5 pos 7996, 1 != 0
+ERROR at chr 5 pos 7626, 1 != 0
+ERROR at chr 5 pos 7700, 1 != 0
+ERROR at chr 5 pos 7910, 1 != 0
+ERROR at chr 5 pos 7959, 1 != 0
 ERROR at chr 5 pos 8005, 1 != 0
-ERROR at chr 5 pos 8016, 1 != 0
-ERROR at chr 5 pos 8086, 1 != 0
-ERROR at chr 5 pos 8139, 1 != 0
-ERROR at chr 5 pos 8330, 1 != 0
-ERROR at chr 5 pos 8378, 1 != 0
-ERROR at chr 5 pos 8391, 1 != 0
-ERROR at chr 5 pos 8392, 1 != 0
-ERROR at chr 5 pos 8399, 1 != 0
-ERROR at chr 5 pos 8416, 1 != 0
-ERROR at chr 5 pos 8417, 1 != 0
-ERROR at chr 5 pos 8446, 1 != 0
-ERROR at chr 5 pos 8451, 1 != 0
-ERROR at chr 5 pos 8466, 1 != 0
-ERROR at chr 5 pos 8485, 1 != 0
-ERROR at chr 5 pos 8491, 1 != 0
-ERROR at chr 5 pos 8492, 1 != 0
-ERROR at chr 5 pos 8533, 1 != 0
-ERROR at chr 5 pos 8619, 1 != 0
-ERROR at chr 5 pos 8622, 1 != 0
-ERROR at chr 5 pos 8632, 1 != 0
-ERROR at chr 5 pos 8643, 1 != 0
-ERROR at chr 5 pos 8651, 1 != 0
-ERROR at chr 5 pos 8656, 1 != 0
-ERROR at chr 5 pos 8664, 1 != 0
-ERROR at chr 5 pos 8701, 1 != 0
-ERROR at chr 5 pos 8711, 1 != 0
-ERROR at chr 5 pos 8718, 1 != 0
-ERROR at chr 5 pos 8743, 1 != 0
-ERROR at chr 5 pos 8751, 1 != 0
-ERROR at chr 5 pos 8797, 1 != 0
-ERROR at chr 5 pos 8801, 1 != 0
-ERROR at chr 5 pos 8802, 1 != 0
+ERROR at chr 5 pos 8414, 1 != 0
+ERROR at chr 5 pos 8432, 1 != 0
+ERROR at chr 5 pos 8484, 1 != 0
+ERROR at chr 5 pos 8556, 1 != 0
+ERROR at chr 5 pos 8558, 1 != 0
+ERROR at chr 5 pos 8578, 1 != 0
+ERROR at chr 5 pos 8671, 1 != 0
+ERROR at chr 5 pos 8688, 1 != 0
+ERROR at chr 5 pos 8738, 1 != 0
+ERROR at chr 5 pos 8794, 1 != 0
+ERROR at chr 5 pos 8813, 1 != 0
 ERROR at chr 5 pos 8826, 1 != 0
-ERROR at chr 5 pos 8828, 1 != 0
-ERROR at chr 5 pos 8831, 1 != 0
-ERROR at chr 5 pos 8847, 1 != 0
-ERROR at chr 5 pos 8858, 1 != 0
-ERROR at chr 5 pos 8859, 1 != 0
-ERROR at chr 5 pos 8871, 1 != 0
-ERROR at chr 5 pos 8872, 1 != 0
-ERROR at chr 5 pos 8896, 1 != 0
-ERROR at chr 5 pos 8933, 1 != 0
-ERROR at chr 5 pos 8941, 1 != 0
-ERROR at chr 5 pos 8969, 1 != 0
+ERROR at chr 5 pos 8833, 1 != 0
+ERROR at chr 5 pos 8918, 1 != 0
 Test # 0 FAILED
 obj-*/graphconstructor/twopaco -f 20 -k 11 example/example.fa -o example/example.dbg
 Threads = 1
@@ -5109,7 +3298,7 @@
    dh_testroot -O--sourcedir=src
    dh_prep -O--sourcedir=src
    dh_auto_install --destdir=debian/twopaco/ -O--sourcedir=src
-	cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
+	cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/twopaco-1.0.0\+dfsg/debian/twopaco AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
 make[1]: Entering directory '/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf'
 /usr/bin/cmake -S/build/reproducible-path/twopaco-1.0.0+dfsg/src -B/build/reproducible-path/twopaco-1.0.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
 make  -f CMakeFiles/Makefile2 preinstall
@@ -5224,8 +3413,8 @@
  diversion by libc6 from: /lib/ld-linux-armhf.so.3
 dpkg-shlibdeps: warning: diversions involved - output may be incorrect
  diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
-dpkg-shlibdeps: warning: debian/twopaco/usr/bin/graphdump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
 dpkg-shlibdeps: warning: debian/twopaco/usr/bin/twopaco contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
+dpkg-shlibdeps: warning: debian/twopaco/usr/bin/graphdump contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
    dh_installdeb -O--sourcedir=src
    dh_gencontrol -O--sourcedir=src
    dh_md5sums -O--sourcedir=src
@@ -5239,12 +3428,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/15882/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/15882/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/18335 and its subdirectories
-I: Current time: Wed Nov  6 18:09:44 -12 2024
-I: pbuilder-time-stamp: 1730959784
+I: removing directory /srv/workspace/pbuilder/15882 and its subdirectories
+I: Current time: Thu Nov  7 20:20:02 +14 2024
+I: pbuilder-time-stamp: 1730960402