Diff of the two buildlogs: -- --- b1/build.log 2025-01-13 11:43:09.040190590 +0000 +++ b2/build.log 2025-01-13 11:49:27.447018804 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jan 12 23:34:21 -12 2025 -I: pbuilder-time-stamp: 1736768061 +I: Current time: Tue Jan 14 01:43:47 +14 2025 +I: pbuilder-time-stamp: 1736768627 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying use-archive-xopen.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/26497/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/26605/tmp/hooks/D01_modify_environment starting +debug: Running on virt32b. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 13 11:44 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/26605/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/26605/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='b737d28a6edb4eb4996f6558cb27459f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='26497' - PS1='# ' - PS2='> ' + INVOCATION_ID=e12cbafc26504c1e87f83aea414bc6a7 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=26605 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QZHKBgef/pbuilderrc_WZ3j --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QZHKBgef/b1 --logfile b1/build.log vcfanno_0.3.5+ds-2.dsc' - SUDO_GID='114' - SUDO_UID='109' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QZHKBgef/pbuilderrc_0lCV --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QZHKBgef/b2 --logfile b2/build.log vcfanno_0.3.5+ds-2.dsc' + SUDO_GID=112 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux ff64a 6.1.0-29-arm64 #1 SMP Debian 6.1.123-1 (2025-01-02) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-29-armmp-lpae #1 SMP Debian 6.1.123-1 (2025-01-02) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/26497/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/26605/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -232,7 +264,7 @@ Get: 99 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.5-2+b1 [82.3 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf samtools armhf 1.20-3 [620 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf tabix armhf 1.20+ds-2 [418 kB] -Fetched 118 MB in 4s (32.8 MB/s) +Fetched 118 MB in 4s (30.1 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19567 files and directories currently installed.) @@ -651,7 +683,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-2_source.changes +I: user script /srv/workspace/pbuilder/26605/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/26605/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/vcfanno-0.3.5+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../vcfanno_0.3.5+ds-2_source.changes dpkg-buildpackage: info: source package vcfanno dpkg-buildpackage: info: source version 0.3.5+ds-2 dpkg-buildpackage: info: source distribution unstable @@ -674,64 +710,64 @@ dh_autoreconf -O--buildsystem=golang dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang - cd obj-arm-linux-gnueabihf && go install -trimpath -v -p 5 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared -encoding + cd obj-arm-linux-gnueabihf && go install -trimpath -v -p 4 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared internal/unsafeheader -internal/byteorder internal/goarch -internal/cpu +encoding +internal/byteorder internal/coverage/rtcov -internal/godebugs +internal/cpu internal/abi +internal/godebugs internal/chacha8rand internal/goexperiment internal/goos +internal/bytealg internal/profilerecord +internal/runtime/atomic internal/runtime/syscall runtime/internal/math -internal/bytealg +internal/stringslite runtime/internal/sys -internal/runtime/atomic cmp internal/itoa internal/race -internal/stringslite +internal/runtime/exithook math/bits unicode/utf8 sync/atomic -unicode -internal/runtime/exithook math +unicode internal/asan internal/msan unicode/utf16 log/internal +runtime github.com/dsnet/compress/bzip2/internal/sais github.com/dsnet/compress/internal crypto/internal/alias crypto/internal/boring/sig +github.com/klauspost/compress github.com/ulikunitz/xz/internal/hash container/list vendor/golang.org/x/crypto/cryptobyte/asn1 vendor/golang.org/x/crypto/internal/alias internal/nettrace -runtime -github.com/klauspost/compress -internal/weak -crypto/subtle internal/reflectlite iter +crypto/subtle sync -maps slices +internal/weak +maps +internal/bisect internal/testlog internal/singleflight -internal/bisect runtime/cgo errors sort -io strconv +io internal/oserror path internal/godebug @@ -739,132 +775,132 @@ strings reflect bytes +bufio hash hash/crc32 -bufio +time +internal/syscall/unix +internal/syscall/execenv container/heap github.com/brentp/irelate/interfaces regexp/syntax math/rand +io/fs +internal/poll +internal/fmtsort +encoding/binary +github.com/BurntSushi/toml/internal +internal/filepathlite +regexp +context +encoding/base64 github.com/dsnet/compress/internal/errors +os github.com/dsnet/compress crypto -time -internal/syscall/unix -internal/syscall/execenv crypto/cipher -regexp -crypto/internal/boring crypto/internal/randutil -crypto/sha256 +github.com/cespare/xxhash +github.com/klauspost/compress/internal/snapref +crypto/internal/boring hash/crc64 +crypto/sha256 crypto/aes crypto/des crypto/internal/edwards25519/field -crypto/sha512 crypto/internal/nistec/fiat +crypto/sha512 crypto/internal/edwards25519 crypto/hmac -vendor/golang.org/x/crypto/hkdf -crypto/md5 -internal/fmtsort -io/fs -internal/poll -encoding/binary -github.com/BurntSushi/toml/internal -context -internal/filepathlite -crypto/rc4 -crypto/sha1 -vendor/golang.org/x/net/dns/dnsmessage -os -encoding/base64 -github.com/cespare/xxhash -github.com/klauspost/compress/internal/snapref vendor/golang.org/x/crypto/chacha20 vendor/golang.org/x/crypto/internal/poly1305 -encoding/pem vendor/golang.org/x/crypto/chacha20poly1305 -math/rand/v2 -vendor/golang.org/x/text/transform -net/http/internal/ascii -internal/concurrent -unique -net/netip -crypto/internal/nistec +fmt io/ioutil path/filepath -fmt +vendor/golang.org/x/crypto/hkdf vendor/golang.org/x/sys/cpu os/exec vendor/golang.org/x/crypto/sha3 -crypto/ecdh -encoding/hex +crypto/md5 +crypto/rc4 +crypto/sha1 +encoding/pem flag -net/url -compress/flate encoding/json +compress/flate +encoding/hex +net/url +compress/gzip encoding/csv +github.com/biogo/hts/bgzf log github.com/pkg/errors github.com/yuin/gopher-lua/ast -github.com/yuin/gopher-lua/pm -compress/gzip github.com/brentp/vcfgo -github.com/yuin/gopher-lua/parse -github.com/biogo/hts/bgzf -github.com/dsnet/compress/internal/prefix github.com/biogo/hts/bgzf/index -math/big github.com/biogo/hts/csi -github.com/BurntSushi/toml github.com/biogo/hts/internal -github.com/dsnet/compress/bzip2 -github.com/yuin/gopher-lua +github.com/BurntSushi/toml github.com/biogo/hts/tabix github.com/biogo/hts/sam +github.com/yuin/gopher-lua/parse +github.com/yuin/gopher-lua/pm +github.com/dsnet/compress/internal/prefix +github.com/dsnet/compress/bzip2 +github.com/biogo/hts/bam +github.com/yuin/gopher-lua +github.com/brentp/irelate/parsers github.com/klauspost/compress/fse +math/big +github.com/brentp/bix github.com/klauspost/compress/huff0 +github.com/brentp/irelate runtime/debug -github.com/biogo/hts/bam github.com/klauspost/compress/flate github.com/ulikunitz/xz/internal/xlog -github.com/brentp/irelate/parsers -crypto/rand github.com/ulikunitz/xz/lzma +crypto/rand github.com/klauspost/compress/zstd -github.com/brentp/bix -github.com/brentp/irelate github.com/ulikunitz/xz -crypto/elliptic github.com/klauspost/pgzip +crypto/internal/nistec crypto/internal/bigmod +github.com/yuin/gluare crypto/internal/boring/bbig encoding/asn1 +github.com/brentp/goluaez +crypto/ecdh +crypto/elliptic +vendor/golang.org/x/crypto/cryptobyte +github.com/brentp/vcfanno/api crypto/ed25519 -github.com/yuin/gluare crypto/internal/hpke crypto/internal/mlkem768 +crypto/ecdsa crypto/rsa -github.com/brentp/goluaez crypto/dsa -vendor/golang.org/x/crypto/cryptobyte crypto/x509/pkix -net +vendor/golang.org/x/net/dns/dnsmessage +math/rand/v2 +vendor/golang.org/x/text/transform vendor/golang.org/x/text/unicode/bidi -github.com/brentp/vcfanno/api -crypto/ecdsa vendor/golang.org/x/text/unicode/norm -vendor/golang.org/x/text/secure/bidirule +internal/concurrent +unique +net/netip vendor/golang.org/x/net/http2/hpack +vendor/golang.org/x/text/secure/bidirule mime mime/quotedprintable net/http/internal -os/user vendor/golang.org/x/net/idna -vendor/golang.org/x/net/http/httpproxy +net/http/internal/ascii +os/user +net net/textproto crypto/x509 +vendor/golang.org/x/net/http/httpproxy vendor/golang.org/x/net/http/httpguts mime/multipart crypto/tls @@ -874,14 +910,14 @@ github.com/brentp/vcfanno/shared github.com/brentp/vcfanno dh_auto_test -O--buildsystem=golang - cd obj-arm-linux-gnueabihf && go test -vet=off -v -p 5 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared + cd obj-arm-linux-gnueabihf && go test -vet=off -v -p 4 github.com/brentp/vcfanno github.com/brentp/vcfanno/api github.com/brentp/vcfanno/shared ? github.com/brentp/vcfanno/shared [no test files] testing: warning: no tests to run PASS -ok github.com/brentp/vcfanno 0.030s [no tests to run] +ok github.com/brentp/vcfanno 0.018s [no tests to run] === RUN Test OK: 13 passed ---- PASS: Test (0.09s) +--- PASS: Test (0.03s) === RUN TestHandleA --- PASS: TestHandleA (0.00s) === RUN TestHandlAMulti @@ -889,7 +925,7 @@ === RUN TestByAlt --- PASS: TestByAlt (0.00s) PASS -ok github.com/brentp/vcfanno/api 0.113s +ok github.com/brentp/vcfanno/api 0.051s create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang @@ -1002,12 +1038,12 @@ dh_installdeb -O--buildsystem=golang dh_golang -O--buildsystem=golang dh_gencontrol -O--buildsystem=golang -dpkg-gencontrol: warning: Depends field of package vcfanno-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package vcfanno: substitution variable ${misc:Static-Built-Using} unused, but is defined +dpkg-gencontrol: warning: Depends field of package vcfanno-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=golang dh_builddeb -O--buildsystem=golang -dpkg-deb: building package 'vcfanno-examples' in '../vcfanno-examples_0.3.5+ds-2_all.deb'. dpkg-deb: building package 'vcfanno' in '../vcfanno_0.3.5+ds-2_armhf.deb'. +dpkg-deb: building package 'vcfanno-examples' in '../vcfanno-examples_0.3.5+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../vcfanno_0.3.5+ds-2_armhf.buildinfo dpkg-genchanges --build=binary -O../vcfanno_0.3.5+ds-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1015,12 +1051,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/26605/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/26605/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/26497 and its subdirectories -I: Current time: Sun Jan 12 23:43:04 -12 2025 -I: pbuilder-time-stamp: 1736768584 +I: removing directory /srv/workspace/pbuilder/26605 and its subdirectories +I: Current time: Tue Jan 14 01:49:23 +14 2025 +I: pbuilder-time-stamp: 1736768963