Diff of the two buildlogs: -- --- b1/build.log 2024-11-30 11:23:19.262727013 +0000 +++ b2/build.log 2024-11-30 11:25:11.277658585 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 29 23:21:38 -12 2024 -I: pbuilder-time-stamp: 1732965698 +I: Current time: Sun Dec 1 01:23:39 +14 2024 +I: pbuilder-time-stamp: 1732965819 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying Makefile.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/13823/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6487/tmp/hooks/D01_modify_environment starting +debug: Running on ff4a. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 30 11:24 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6487/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6487/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='armhf' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='armhf' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=armhf + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=arm + HOST_ARCH=armhf IFS=' ' - INVOCATION_ID='ecc87b8505f24323bb430296bb30ec7d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='13823' - PS1='# ' - PS2='> ' + INVOCATION_ID=e1daad71d1f54f01b105d0c09a7996e2 + LANG=C + LANGUAGE=it_CH:it + LC_ALL=C + MACHTYPE=arm-unknown-linux-gnueabihf + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnueabihf + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6487 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oTjiOMiI/pbuilderrc_QNJ4 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oTjiOMiI/b1 --logfile b1/build.log yaha_0.1.83-3.dsc' - SUDO_GID='113' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://10.0.0.15:3142/' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oTjiOMiI/pbuilderrc_hbsC --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oTjiOMiI/b2 --logfile b2/build.log yaha_0.1.83-3.dsc' + SUDO_GID=113 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://10.0.0.15:3142/ I: uname -a - Linux virt64c 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/13823/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/6487/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -138,7 +170,7 @@ Get: 27 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] -Fetched 19.1 MB in 1s (27.2 MB/s) +Fetched 19.1 MB in 1s (15.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19683 files and directories currently installed.) @@ -269,7 +301,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/yaha-0.1.83/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../yaha_0.1.83-3_source.changes +I: user script /srv/workspace/pbuilder/6487/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/6487/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/yaha-0.1.83/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../yaha_0.1.83-3_source.changes dpkg-buildpackage: info: source package yaha dpkg-buildpackage: info: source version 0.1.83-3 dpkg-buildpackage: info: source distribution unstable @@ -279,7 +315,7 @@ debian/rules clean dh clean dh_auto_clean - make -j3 clean + make -j4 clean make[1]: Entering directory '/build/reproducible-path/yaha-0.1.83' rm -Rf obj rm -Rf bin @@ -303,13 +339,14 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j3 "INSTALL=install --strip-program=true" + make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/yaha-0.1.83' mkdir -p obj mkdir -p bin cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Main.c -o obj/Main.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignArgs.c -o obj/AlignArgs.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignHelpers.c -o obj/AlignHelpers.o +g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignExtFrag.cpp -o obj/AlignExtFrag.o src/Main.c: In function 'main': src/Main.c:640:54: warning: format '%zd' expects argument of type 'signed size_t', but argument 3 has type 'long int' [-Wformat=] 640 | fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt); @@ -323,7 +360,6 @@ | | | | int long int | %ld -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignExtFrag.cpp -o obj/AlignExtFrag.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignOutput.c -o obj/AlignOutput.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/BaseSeq.c -o obj/BaseSeq.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Compress.c -o obj/Compress.o @@ -334,14 +370,14 @@ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/QueryMatch.c -o obj/QueryMatch.o cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/QueryState.c -o obj/QueryState.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/SW.cpp -o obj/SW.o -cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Math.c -o obj/Math.o src/SW.cpp:799:5: warning: redeclaration of 'template int findAffineGapScore(QueryState_t*, char*, SUINT, char*, SUINT, EditOpList_t*, SUINT*, SUINT*)' may not have default arguments [-fpermissive] 799 | int findAffineGapScore(QueryState_t * QS, char * qStr, SUINT qLen, char * rStr, SUINT rLen, EditOpList_t * list, SUINT * addedQLen = NULL, SUINT * addedRLen = NULL) | ^~~~~~~~~~~~~~~~~~ +cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/yaha-0.1.83=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Math.c -o obj/Math.o g++ -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -pthread -o bin/yaha obj/Main.o obj/AlignArgs.o obj/AlignHelpers.o obj/AlignExtFrag.o obj/AlignOutput.o obj/BaseSeq.o obj/Compress.o obj/FileHelpers.o obj/GraphPath.o obj/Index.o obj/Query.o obj/QueryMatch.o obj/QueryState.o obj/SW.o obj/Math.o make[1]: Leaving directory '/build/reproducible-path/yaha-0.1.83' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-802yCxBc + rm -fr -- /tmp/dh-xdg-rundir-5FM7cDVi create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/yaha.substvars @@ -429,12 +465,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6487/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6487/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/13823 and its subdirectories -I: Current time: Fri Nov 29 23:23:11 -12 2024 -I: pbuilder-time-stamp: 1732965791 +I: removing directory /srv/workspace/pbuilder/6487 and its subdirectories +I: Current time: Sun Dec 1 01:25:07 +14 2024 +I: pbuilder-time-stamp: 1732965907