Diff of the two buildlogs: -- --- b1/build.log 2025-04-10 20:07:26.189641481 +0000 +++ b2/build.log 2025-04-10 20:12:15.843161807 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 10 08:03:09 -12 2025 -I: pbuilder-time-stamp: 1744315389 +I: Current time: Thu May 14 16:30:29 +14 2026 +I: pbuilder-time-stamp: 1778725829 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./ariba_2.14.6+ds.orig.tar.xz] I: copying [./ariba_2.14.6+ds-5.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Jan 7 02:59:17 2023 -12 +gpgv: Signature made Sun Jan 8 04:59:17 2023 +14 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key @@ -37,134 +37,166 @@ dpkg-source: info: applying adjust-bowtie2-test.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4145161/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1914595/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 14 16:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1914595/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1914595/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='c2047fc1004040d2bf3297b6849970a7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4145161' - PS1='# ' - PS2='> ' + INVOCATION_ID=f05b758af9a44a228d7439e15c8500d9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1914595 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EDlvCQ6X/pbuilderrc_wOtP --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EDlvCQ6X/b1 --logfile b1/build.log ariba_2.14.6+ds-5.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EDlvCQ6X/pbuilderrc_6f8c --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EDlvCQ6X/b2 --logfile b2/build.log ariba_2.14.6+ds-5.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-32-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Mar 29 2024 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Nov 21 08:01 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Nov 21 08:01 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Nov 21 08:01 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Nov 21 08:01 more - -rwsr-xr-x 1 root root 59704 Nov 21 08:01 mount - -rwxr-xr-x 1 root root 18744 Nov 21 08:01 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Jul 28 2023 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Nov 21 08:01 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Jan 19 2024 tar - -rwxr-xr-x 1 root root 14520 Jul 28 2023 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Nov 21 08:01 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Nov 21 08:01 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/4145161/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Mar 30 2024 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 2023 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Nov 22 2024 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 2022 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 2022 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 2023 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 2023 fgrep + -rwxr-xr-x 1 root root 85600 Nov 22 2024 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 2023 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 2022 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 2023 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Nov 22 2024 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Nov 22 2024 more + -rwsr-xr-x 1 root root 59704 Nov 22 2024 mount + -rwxr-xr-x 1 root root 18744 Nov 22 2024 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 2022 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Mar 30 2024 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Jul 29 2023 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 2023 sed + lrwxrwxrwx 1 root root 9 May 14 16:30 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Nov 22 2024 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Jan 20 2024 tar + -rwxr-xr-x 1 root root 14520 Jul 29 2023 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Nov 22 2024 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Nov 22 2024 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 2022 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/1914595/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -464,7 +496,7 @@ Get: 220 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1+deb12u1 [522 kB] Get: 221 http://deb.debian.org/debian bookworm/main amd64 python3-yaml amd64 6.0-3+b2 [119 kB] Get: 222 http://deb.debian.org/debian bookworm/main amd64 spades amd64 3.15.5+dfsg-2 [8663 kB] -Fetched 164 MB in 4s (42.6 MB/s) +Fetched 164 MB in 2s (78.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19546 files and directories currently installed.) @@ -1389,7 +1421,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ariba-2.14.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ariba_2.14.6+ds-5_source.changes +I: user script /srv/workspace/pbuilder/1914595/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for bookworm +I: user script /srv/workspace/pbuilder/1914595/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ariba-2.14.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ariba_2.14.6+ds-5_source.changes dpkg-buildpackage: info: source package ariba dpkg-buildpackage: info: source version 2.14.6+ds-5 dpkg-buildpackage: info: source distribution unstable @@ -1422,790 +1458,790 @@ running build running build_py creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/mapping.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/versions.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/common.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/tb.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/report.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/summary.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/link.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/assembly.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/histogram.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/common.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/flag.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/card_record.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/cluster.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/faidx.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/read_store.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba -copying ariba/clusters.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/link.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba copying ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba +copying ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks copying ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks copying ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks copying ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks copying ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks copying ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks -copying ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks +copying ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests copying ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests -copying ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests +copying ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data -copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data -copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data copying ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data +copying ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data copying ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data +copying ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data +copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data +copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data +copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data copying ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data -copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data -copying ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data copying ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data -copying ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data -copying ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data +copying ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data copying ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data -copying ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data +copying ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref -copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref +copying ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref copying ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding copying ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out +copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out -copying ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out copying ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref -copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref +copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref copying ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon -copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon -copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon copying ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon +copying ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon +copying ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail -copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail copying ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail +copying ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch -copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch +copying ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars -copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars -copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars copying ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars +copying ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars +copying ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene -copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene +copying ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly copying ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa -copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa +copying ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail -copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail +copying ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files -copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files copying ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files +copying ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering -copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering +copying ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 copying ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2 creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir -copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir -copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir copying ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir +copying ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir +copying ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only -copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only copying ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only +copying ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon -copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon -copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon copying ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon +copying ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon +copying ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 copying ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1 creating /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene -copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene +copying ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene running build_ext building 'minimap_ariba' extension creating build @@ -2352,7 +2388,7 @@ other = LooseVersion(other) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================ 323 passed, 33 skipped, 280 warnings in 12.71s ================ +================ 323 passed, 33 skipped, 280 warnings in 25.86s ================ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -2370,1009 +2406,1009 @@ creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11 creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/vcfcall_ariba.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/minimap_ariba.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/megares_data_finder.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/mapping.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/versions.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/assembly_variants.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/summary.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/report_filter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/pubmlst_getter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/summary.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/getref.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/pubmlstget.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/run.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/flag.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/prepareref_tb.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/aln2meta.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/refquery.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/reportfilter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/micplot.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/prepareref.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/version.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/pubmlstspecies.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/flag.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/pubmlstspecies.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/micplot.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/getref.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/summary.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/prepareref.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/version.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/flag.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/aln2meta.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/refquery.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/test.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/prepareref_tb.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/reportfilter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/run.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/expandflag.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/bam_parse.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/ref_genes_getter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/pubmlstget.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/expandflag.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/refquery.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/test.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tasks/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/read_filter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/refdata_query.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/histogram.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/external_progs.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/samtools_variants.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/common.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/pubmlst_ref_preparer.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/summary_cluster_variant.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/scaffold_graph.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/ref_seq_chooser.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/report_flag_expander.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/report.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/vfdb_parser.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/assembly.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/aln_to_metadata.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/card_record.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/summary_cluster.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/link.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/cdhit.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/report_filter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/flag.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/summary_cluster.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/common.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/summary.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/summary_sample.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/sequence_variant.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/mic_plotter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/report_flag_expander.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/clusters.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/histogram.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/link.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/faidx.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/card_record.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/refdata_query.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/sequence_metadata.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/reference_data.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/samtools_variants.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/mlst_reporter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/megares_data_finder.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/ref_preparer.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/mapping.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/mlst_profile.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/read_store.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/versions.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/cluster.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/vfdb_parser.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/report.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/read_filter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/assembly.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/external_progs.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/assembly_compare.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/assembly_variants.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/scaffold_graph.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/tb.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/bam_parse.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/sequence_variant_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/versions_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/ref_seq_chooser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_refs_fa/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_refs_fa +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.no_link_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.vcf -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_sequence_type.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/megares_zip_parser_write_files +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/megares_zip_parser_write_files +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/megares_zip_parser_write_files +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/megares_zip_parser_write_files +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ctg.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/megares_zip_parser_write_files -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_to_external_header_mappings_v1.01.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/megares_zip_parser_write_files -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_database_v1.01.fasta -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/megares_zip_parser_write_files -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files/megares_annotations_v1.01.csv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/megares_zip_parser_write_files -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_one_missing.zip -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_assembly_fail +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_parse.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_profile_test.init.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_fake_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/00.rename_info -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/refdata_query_prepareref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_partial_asmbly -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_1/genes.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_1 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.not_present.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.cluster -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/test_common_cat_files.in.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_to_matrix.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.snps -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/test_common_cat_files.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_write_distance_matrix.distances -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_ok.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_sort_file.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_noncoding_checks.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_presence_absence -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.no_link_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_rename_sequences.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_init_bad.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_sam_pair_to_insert.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_too_short.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_rename_sequences_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_column_names_tuples_and_het_snps.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_cdhit_clstr_to_reads.in.clstr -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.fa.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_rename_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_remove_bad_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_sorted.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_profile_test.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_fails.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite_fails.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.reads.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_fails.empty.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam.bai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.sma -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_varonly.not_present.always_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_run.expected.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.smi -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_count_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.noncoding.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.params.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parse_extract_files_ok.zip -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_insert_histogram.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_load_ref_data_from_dir/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_load_ref_data_from_dir +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.insertHistogram -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.in.read_store -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_whole_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_partial_asmbly.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/vfdb_parser_test_run.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_sequence.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_count_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_load_input_files.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_rename_seqs.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_profile_test.init_multiple_extra_columns.profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.meta.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_no_reads_2/genes.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_init_no_reads_2 +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data_metadata.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_getter.dbases.xml -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.coords -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_non_synon_variants.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_column_summary_data.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_init.fofn -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_out.rename -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data_variants_only.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster_counts.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.expect.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_choose_ref_fail -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_total_depth_per_contig -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.2.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_flag_expander.run.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_out.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_catted_assemblies_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_fasta_file.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.expected.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_variant_positions_from_vcf.vcf -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_run.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_rename_seqs.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.properPairs -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.asmbly.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr2rep -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.expected_contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_choose_ref_fail.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_catted_assembled_genes_fasta.expected.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/test_common_cat_files.in.3 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.make_link_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene1.tfa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/gene2.tfa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in/profile.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/pubmlst_ref_prepare.test_load_fa_and_clusters.in -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_dummy_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_get_clusters_from_bak_file.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_variants_only.snps -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_noncdg.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.cluster2representative -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite_fail.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_load_report_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_load_file.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_unsorted.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/test_common_cat_files.in.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_data_info_file -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_bad.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_write_report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_cluster_with_cdhit.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio2.yes.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.smi -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.expected.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_ok.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.mlst_profile.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_gather_unfiltered_output_data.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.bad -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_load_fofn -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_gene_fa.db.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_load_report_bad.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_all_metadata_tsvs.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_load_aln_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data_non_coding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_get_total_alignment_score.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_load_annotations.csv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_refdata.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_unmapped_mates_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite_fails.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_ok.rename.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_proper_pairs.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_whole_run.out.csv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_newick_from_dist_matrix.distances -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_not_gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_spaces_in_name.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_check_spades_log_file.log.good -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_non_coding +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.3.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_write_cluster_allocation_file.expected -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_fake_run.non-unique.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.ref_for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_clean.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.one_gene_missing.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_variants_in_coords.vcf -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_assemble_with_fermilite.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_make_cluster_file.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_non_coding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/tb_genbank_to_gene_coords.gb -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_fix_contig_orientation.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_bowtie2_remove_both_unmapped_reads.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_write_tb_resistance_calls_json.out.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.allrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_2.fq.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.clstr_count -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_cat_genes_match_ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_compare_parse_nucmer_coords_file.coords -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_keep_seqs_from_dict.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_write_files.expect.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2 +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_known_snp_presabs_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_remove_bad_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_filter_test_init_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_fails_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.no_combinations.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_ref.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_fails.empty.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_duplicate_name.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/tb_report_to_resistance_dict.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_test_flanking.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_all_fasta_files.in.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.expected.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_no_snp.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_genes_getter.fix_virulencefinder_fasta_file.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_load_input_files.1.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_one_var_one_ctg_cdg.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/megares_zip_parser_load_header_mappings.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_multiple_vars +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_sequence.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.out2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_assembly_fail.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_check_too_long.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data_presence_absence.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/tb_write_prepareref_metadata_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.clusterrefs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_rename_sequences.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_load_vars_file_good.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_compress_and_index_file.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_get_best_seq_by_alignment_score_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_parse.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.clusters -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_assemble_with_spades_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.params.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.ref/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/clusters_run_with_tb.ref +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_remove_bad_genes.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/aln_to_metadata_run_coding.out.cluster -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_not_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_out_cluster2representative.in -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_dummy_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_run_fermilite.reads.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_contained_ref_seq.cluster_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_subset.2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.ref.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.snp.snps -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_run_get_clusters_from_dict_rename.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.no_link.bam.bai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snps.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.all_present_perfect.report.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_write_all_links_to_file.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_load_summary_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.1.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.good.csv.1 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_no_nucmer_match.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_gene_start_mismatch -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_init_refdata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only.present.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_fasta_to_metadata.coding.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_out.removed.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_variants_only/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ok_variants_only copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.good -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_load_minimap_files.clusterCounts -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snp.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.no.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad3 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.new_st.report.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.hist -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_metadata_tsv.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_best_seq_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_write_sequences_to_files.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.expected.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_ok.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/dummy.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refcheck_test_fix_out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_smtls_snp_varonly_nonc.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_ref_seqs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_depths_at_position.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_sam_to_soft_clipped.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_nonc_no_snp.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_1.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_sequence_is_in_fasta_file.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_no_reads_after_filtering.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snps.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/report_flag_expander.run.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_init_ok.params.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.csv.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run.in.4.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_bam_to_clusters_reads.db.fa.fai -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_varonly_gene_2.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.het_snp.out.details.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_write_seqs_to_fasta.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.yes.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_make_vcf_and_depths_files.expect.cov -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.all.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.auto_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_genes.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/00.version_info.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.noncoding.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.varonly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.clusters.pickle -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_preparer_test_run_all_noncoding.out/02.cdhit.gene.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/ref_preparer_test_run_all_noncoding.out -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cdhit_test_load_user_clusters_file.bad2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_to_matrix.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/vfdb_parser_test_run.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_load_mic_file.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/refdata_query_prepareref.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mapping_test_sam_to_fastq.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/graph_test_update_from_sam.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.make_link.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_gene.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_clstrs_file.in.clstrs.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_test_all_non_wild_type_variants.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_parse.reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_smtls_snp_presabs_nonc -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_delete_codon/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_delete_codon -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run_cdhit_est_2d.expected.clstr -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_test_whole_run.in.2.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_scaffold_with_sspace_reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_mummer_variants.none.snps -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.in.reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/link_test_init.reads.make_link_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/for_reads.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_insert_codon/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_insert_codon +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ok_presence_absence.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.vcf -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_sort_file.out -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mic_plotter_to_boxplot_tsv.antibio1.exclude.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_multiple_vars.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_make_reads_for_assembly.in1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_load_input_check_seq_names.bad.fa.2 -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/summary_sample_test_var_groups.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_test_parse_assembly_bam.assembly.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.out.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/best_seq_chooser_total_alignment_score_reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_full_run_best_match_is_in_cluster.contigs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_dummy_db.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/bam_parse_test_update_soft_clipped_from_sam.bam -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_filter_test_run.in.ref.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_minimap_reads_to_all_refs.out.pairs -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/read_store_test_get_reads.expected.reads_2.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_write_mlst_reports.ariba.report.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/mlst_reporter.profile.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/ref_seq_chooser_matching_contig_pieces.expect.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene/references.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data/cluster_full_run_known_smtls_snp_presabs_gene -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/cluster_test_full_run_ref_not_in_cluster.all_refs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_sam_pair_to_insert_ref.fa.sma -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_filter_bad_data.expected.check_metadata.log -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_cluster_w_cdhit_nocluster.in.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_read_depths.gz.tbi -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/assembly_variants_test_get_variants_presence_absence.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/samtools_variants_test_get_variants.read_depths.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/reference_data_sequence_type.in.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/faidx_test_write_fa_subset.out.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_test_dummy_db.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/assembly_compare_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/scaffold_graph_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/summary_cluster_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/data/clusters_run_with_tb.reads_1.fq.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/data +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/external_progs_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/summary_sample_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/pubmlst_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/mapping_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/summary_cluster_variant_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/mlst_profile_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/reference_data_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/mlst_reporter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/ncbi_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/faidx_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/megares_zip_parser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/link_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/clusters_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/summary_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/card_record_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/sequence_metadata_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/cluster_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/ref_genes_getter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/common_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/flag_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/read_store_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/aln_to_metadata_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/report_flag_expander_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/histogram_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/assembly_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/tb_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/read_filter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/cdhit_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/mic_plotter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/test_refdata_query.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/link_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/versions_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/clusters_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/assembly_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/assembly_compare_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/summary_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/summary_cluster_variant_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/card_record_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/ref_preparer_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/megares_zip_parser_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/reference_data_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/ref_seq_chooser_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/flag_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/megares_data_finder_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/mapping_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/vfdb_parser_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/summary_sample_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/cdhit_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/mic_plotter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/common_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/tb_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/samtools_variants_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/faidx_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/pubmlst_getter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/mlst_reporter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/scaffold_graph_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/flag_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/read_filter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/test_refdata_query.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/bam_parse_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/mlst_profile_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/aln_to_metadata_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/read_store_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/versions_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/external_progs_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/assembly_variants_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/summary_cluster_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/pubmlst_ref_preparer_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/histogram_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/sequence_metadata_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/ref_genes_getter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/report_flag_expander_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/assembly_variants_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/bam_parse_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/report_filter_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/reference_data.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/flag.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/mlst_profile.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__init__.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/sequence_variant.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/cluster.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/summary_sample.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/assembly_compare.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/faidx.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/ref_preparer.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/ref_fasta_to_make_reads_from.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/metadata.tsv -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/reads_2.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/reads_1.fq -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/test_run_data/ref_seqs.fa -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/test_run_data -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/ref_seq_chooser.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/faidx.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/read_store.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/card_record.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/assembly_variants.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/link.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/read_filter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/assembly.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/scaffold_graph.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/summary_cluster.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/summary.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/mlst_profile.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/reference_data.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/refdata_query.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/megares_data_finder.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/assembly_compare.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/samtools_variants.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/pubmlst_getter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/mic_plotter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/summary_cluster_variant.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/versions.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/mapping.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/flag.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/histogram.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/mlst_reporter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/cdhit.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/common.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/summary_sample.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/cluster.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/ref_genes_getter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/external_progs.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/ref_preparer.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/megares_zip_parser.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/sequence_metadata.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/pubmlst_ref_preparer.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/tb.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/report_flag_expander.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/aln_to_metadata.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/vfdb_parser.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/report_filter.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/report.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/bam_parse.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/clusters.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/__pycache__/sequence_variant.cpython-311.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__pycache__ -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/read_store.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -creating /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/NC_000962.3.fa.gz -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20190102.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/NC_000962.3.gb -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20181221.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20190102.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20181115.json -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20181221.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tb_data/panel.20181115.txt -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb_data -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/mlst_reporter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/cdhit.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/clusters.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/report_filter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/ncbi_getter_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/sequence_variant_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/tb_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/__pycache__/cluster_test.cpython-311-pytest-7.2.1.pyc -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__pycache__ +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/pubmlst_ref_preparer_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/megares_data_finder_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/vfdb_parser_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/tests/samtools_variants_test.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/sequence_metadata.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/mic_plotter.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba +copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/ariba/megares_zip_parser.py -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/fermilite_ariba.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/minimap_ariba.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages -copying /build/reproducible-path/ariba-2.14.6+ds/.pybuild/cpython3_3.11_ariba/build/vcfcall_ariba.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb.py to tb.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/cdhit.py to cdhit.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/external_progs.py to external_progs.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/histogram.py to histogram.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/summary.py to summary.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/megares_data_finder.py to megares_data_finder.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/mapping.py to mapping.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/versions.py to versions.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/assembly_variants.py to assembly_variants.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tb.py to tb.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/report.py to report.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/summary.py to summary.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/read_store.py to read_store.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/common.py to common.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/report_filter.py to report_filter.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/pubmlst_getter.py to pubmlst_getter.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/link.py to link.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/card_record.py to card_record.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/assembly.py to assembly.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/run.py to run.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/version.py to version.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/clusters.py to clusters.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/summary_sample.py to summary_sample.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/bam_parse.py to bam_parse.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/flag.py to flag.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/refdata_query.py to refdata_query.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/test.py to test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/summary.py to summary.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/refquery.py to refquery.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/micplot.py to micplot.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/getref.py to getref.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/pubmlstget.py to pubmlstget.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/test.py to test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/run.py to run.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/flag.py to flag.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/prepareref_tb.py to prepareref_tb.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/aln2meta.py to aln2meta.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/expandflag.py to expandflag.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/bam_parse.py to bam_parse.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/ref_genes_getter.py to ref_genes_getter.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/refquery.py to refquery.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/reportfilter.py to reportfilter.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/micplot.py to micplot.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/prepareref.py to prepareref.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/version.py to version.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tasks/pubmlstspecies.py to pubmlstspecies.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/read_filter.py to read_filter.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/refdata_query.py to refdata_query.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/histogram.py to histogram.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/external_progs.py to external_progs.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/samtools_variants.py to samtools_variants.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/common.py to common.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/pubmlst_ref_preparer.py to pubmlst_ref_preparer.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/summary_cluster_variant.py to summary_cluster_variant.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/scaffold_graph.py to scaffold_graph.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/ref_seq_chooser.py to ref_seq_chooser.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/report_flag_expander.py to report_flag_expander.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__init__.py to __init__.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/report.py to report.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/vfdb_parser.py to vfdb_parser.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/assembly.py to assembly.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/faidx.py to faidx.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/aln_to_metadata.py to aln_to_metadata.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/reference_data.py to reference_data.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/card_record.py to card_record.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/summary_cluster.py to summary_cluster.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/cluster.py to cluster.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/link.py to link.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/sequence_variant_test.py to sequence_variant_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/versions_test.py to versions_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/ref_seq_chooser_test.py to ref_seq_chooser_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/link_test.py to link_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/assembly_compare_test.py to assembly_compare_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/scaffold_graph_test.py to scaffold_graph_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/ref_preparer_test.py to ref_preparer_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/summary_cluster_test.py to summary_cluster_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/external_progs_test.py to external_progs_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/summary_sample_test.py to summary_sample_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/pubmlst_getter_test.py to pubmlst_getter_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/mapping_test.py to mapping_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/summary_cluster_variant_test.py to summary_cluster_variant_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/mlst_profile_test.py to mlst_profile_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/reference_data_test.py to reference_data_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/mlst_reporter_test.py to mlst_reporter_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/common_test.py to common_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/ncbi_getter_test.py to ncbi_getter_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/faidx_test.py to faidx_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/megares_zip_parser_test.py to megares_zip_parser_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/link_test.py to link_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/clusters_test.py to clusters_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/summary_test.py to summary_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/card_record_test.py to card_record_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/sequence_metadata_test.py to sequence_metadata_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/cluster_test.py to cluster_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/ref_genes_getter_test.py to ref_genes_getter_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/common_test.py to common_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/flag_test.py to flag_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/read_store_test.py to read_store_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/aln_to_metadata_test.py to aln_to_metadata_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/report_flag_expander_test.py to report_flag_expander_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/histogram_test.py to histogram_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/assembly_variants_test.py to assembly_variants_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/bam_parse_test.py to bam_parse_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/report_filter_test.py to report_filter_test.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/reference_data.py to reference_data.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/flag.py to flag.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/mlst_profile.py to mlst_profile.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/__init__.py to __init__.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/sequence_variant.py to sequence_variant.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/cluster.py to cluster.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/summary_sample.py to summary_sample.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/assembly_compare.py to assembly_compare.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/faidx.py to faidx.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/ref_preparer.py to ref_preparer.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/read_store.py to read_store.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/mlst_reporter.py to mlst_reporter.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/cdhit.py to cdhit.cpython-311.pyc -byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/clusters.py to clusters.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/assembly_test.py to assembly_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/tb_test.py to tb_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/read_filter_test.py to read_filter_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/cdhit_test.py to cdhit_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/mic_plotter_test.py to mic_plotter_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/test_refdata_query.py to test_refdata_query.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/pubmlst_ref_preparer_test.py to pubmlst_ref_preparer_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/megares_data_finder_test.py to megares_data_finder_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/vfdb_parser_test.py to vfdb_parser_test.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/tests/samtools_variants_test.py to samtools_variants_test.cpython-311.pyc byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/sequence_metadata.py to sequence_metadata.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/mic_plotter.py to mic_plotter.cpython-311.pyc +byte-compiling /build/reproducible-path/ariba-2.14.6+ds/debian/ariba/usr/lib/python3.11/dist-packages/ariba/megares_zip_parser.py to megares_zip_parser.cpython-311.pyc running install_egg_info running egg_info creating ariba.egg-info @@ -3417,8 +3453,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'ariba' in '../ariba_2.14.6+ds-5_amd64.deb'. dpkg-deb: building package 'ariba-dbgsym' in '../ariba-dbgsym_2.14.6+ds-5_amd64.deb'. +dpkg-deb: building package 'ariba' in '../ariba_2.14.6+ds-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ariba_2.14.6+ds-5_amd64.buildinfo dpkg-genchanges --build=binary -O../ariba_2.14.6+ds-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3426,12 +3462,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1914595/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1914595/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4145161 and its subdirectories -I: Current time: Thu Apr 10 08:07:25 -12 2025 -I: pbuilder-time-stamp: 1744315645 +I: removing directory /srv/workspace/pbuilder/1914595 and its subdirectories +I: Current time: Thu May 14 16:35:15 +14 2026 +I: pbuilder-time-stamp: 1778726115