Diff of the two buildlogs: -- --- b1/build.log 2023-04-14 15:36:47.369887234 +0000 +++ b2/build.log 2023-04-14 15:42:13.339405511 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 16 09:55:58 -12 2024 -I: pbuilder-time-stamp: 1715896558 +I: Current time: Sat Apr 15 05:36:50 +14 2023 +I: pbuilder-time-stamp: 1681486610 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./ciftilib_1.6.0.orig.tar.gz] I: copying [./ciftilib_1.6.0-2.debian.tar.xz] I: Extracting source -gpgv: Signature made Sat Jan 23 04:42:37 2021 -12 +gpgv: Signature made Sun Jan 24 06:42:37 2021 +14 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key @@ -28,135 +28,144 @@ dpkg-source: info: applying 0002-Fix-compilation-with-Boost-1.71.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3568807/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3420219/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +lrwxrwxrwx 1 root root 4 Jan 6 03:20 /bin/sh -> dash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3420219/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3420219/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME='pbuilder2' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' - INVOCATION_ID='bc0a90b6077446d6b13b6d5d821ab2f5' + INVOCATION_ID='c3a8b399dd61470e96369184a779a1de' LANG='C' - LANGUAGE='en_US:en' + LANGUAGE='et_EE:et' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' + PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' - PPID='3568807' + PPID='3420219' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6lme7JT0/pbuilderrc_3lLd --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6lme7JT0/b1 --logfile b1/build.log ciftilib_1.6.0-2.dsc' - SUDO_GID='111' - SUDO_UID='106' + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6lme7JT0/pbuilderrc_hXn4 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6lme7JT0/b2 --logfile b2/build.log --extrapackages usrmerge ciftilib_1.6.0-2.dsc' + SUDO_GID='110' + SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' + TZ='/usr/share/zoneinfo/Etc/GMT-14' USER='root' _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + http_proxy='http://78.137.99.97:3128' I: uname -a - Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/3568807/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Feb 13 10:05 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:05 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 4 Jan 6 03:20 sh -> dash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3420219/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -306,7 +315,7 @@ Get: 100 http://deb.debian.org/debian bookworm/main amd64 libxml++2.6-2v5 amd64 2.40.1-3 [89.8 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.1+b3 [782 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libxml++2.6-dev amd64 2.40.1-3 [57.4 kB] -Fetched 120 MB in 3s (35.6 MB/s) +Fetched 120 MB in 4s (33.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -731,8 +740,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/ciftilib-1.6.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ciftilib_1.6.0-2_source.changes +I: user script /srv/workspace/pbuilder/3420219/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/3420219/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/ciftilib-1.6.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ciftilib_1.6.0-2_source.changes dpkg-buildpackage: info: source package ciftilib dpkg-buildpackage: info: source version 1.6.0-2 dpkg-buildpackage: info: source distribution unstable @@ -822,7 +842,7 @@ debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/ciftilib-1.6.0' dh_auto_build -- doc - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" doc VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" doc VERBOSE=1 make[2]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/ciftilib-1.6.0 -B/build/ciftilib-1.6.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 doc @@ -1588,7 +1608,7 @@ make[2]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/ciftilib-1.6.0' dh_auto_build -Nlibcifti-doc - cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j15 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/ciftilib-1.6.0 -B/build/ciftilib-1.6.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/CMakeFiles /build/ciftilib-1.6.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1603,23 +1623,23 @@ [ 3%] Building CXX object CMakeFiles/Cifti.dir/src/CiftiFile.cxx.o [ 6%] Building CXX object CMakeFiles/Cifti.dir/src/NiftiIO.cxx.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/CiftiFile.cxx.o -MF CMakeFiles/Cifti.dir/src/CiftiFile.cxx.o.d -o CMakeFiles/Cifti.dir/src/CiftiFile.cxx.o -c /build/ciftilib-1.6.0/src/CiftiFile.cxx -[ 10%] Building CXX object CMakeFiles/Cifti.dir/src/Nifti/NiftiHeader.cxx.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/NiftiIO.cxx.o -MF CMakeFiles/Cifti.dir/src/NiftiIO.cxx.o.d -o CMakeFiles/Cifti.dir/src/NiftiIO.cxx.o -c /build/ciftilib-1.6.0/src/NiftiIO.cxx -[ 13%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiXML.cxx.o +[ 10%] Building CXX object CMakeFiles/Cifti.dir/src/Nifti/NiftiHeader.cxx.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include 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-I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Cifti/StructureEnum.cxx.o -MF CMakeFiles/Cifti.dir/src/Cifti/StructureEnum.cxx.o.d -o CMakeFiles/Cifti.dir/src/Cifti/StructureEnum.cxx.o -c /build/ciftilib-1.6.0/src/Cifti/StructureEnum.cxx -[ 53%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/VolumeSpace.cxx.o -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Cifti/VolumeSpace.cxx.o -MF CMakeFiles/Cifti.dir/src/Cifti/VolumeSpace.cxx.o.d -o CMakeFiles/Cifti.dir/src/Cifti/VolumeSpace.cxx.o -c /build/ciftilib-1.6.0/src/Cifti/VolumeSpace.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, @@ -1673,6 +1691,8 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +[ 53%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/VolumeSpace.cxx.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Cifti/VolumeSpace.cxx.o -MF CMakeFiles/Cifti.dir/src/Cifti/VolumeSpace.cxx.o.d -o CMakeFiles/Cifti.dir/src/Cifti/VolumeSpace.cxx.o -c /build/ciftilib-1.6.0/src/Cifti/VolumeSpace.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: /usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:149:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 149 | std::auto_ptr pimpl_; @@ -1682,8 +1702,8 @@ | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/ciftilib-1.6.0/src/Cifti/VolumeSpace.h:33, - from /build/ciftilib-1.6.0/src/Cifti/VolumeSpace.cxx:28: + from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, + from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -1727,11 +1747,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +[ 56%] Building CXX object CMakeFiles/Cifti.dir/src/Common/AString.cxx.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/AString.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/AString.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/AString.cxx.o -c /build/ciftilib-1.6.0/src/Common/AString.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/ciftilib-1.6.0/src/Cifti/CiftiScalarsMap.h:31, - from /build/ciftilib-1.6.0/src/Cifti/CiftiScalarsMap.cxx:28: + from /build/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.h:31, + from /build/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -1761,6 +1783,19 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, + from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, + from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, + from /build/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, + from /build/ciftilib-1.6.0/src/Cifti/CiftiXML.cxx:28: +/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; + | ^~~~~~~~ +In file included from /usr/include/c++/12/memory:76, + from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:73: /usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:159:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr pimpl_; @@ -1768,6 +1803,13 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:54: +/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:260:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 260 | std::auto_ptr propertyreader; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: /usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:149:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 149 | std::auto_ptr pimpl_; @@ -1778,8 +1820,8 @@ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/ciftilib-1.6.0/src/Cifti/CiftiSeriesMap.h:31, - from /build/ciftilib-1.6.0/src/Cifti/CiftiSeriesMap.cxx:28: + from /build/ciftilib-1.6.0/src/Cifti/CiftiScalarsMap.h:31, + from /build/ciftilib-1.6.0/src/Cifti/CiftiScalarsMap.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -1788,6 +1830,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:69: +/usr/include/libxml++-2.6/libxml++/relaxngschema.h:108:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:70: +/usr/include/libxml++-2.6/libxml++/xsdschema.h:99:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 99 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:54: /usr/include/libxml++-2.6/libxml++/parsers/textreader.h:260:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 260 | std::auto_ptr propertyreader; @@ -1816,6 +1872,20 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:73: +/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:159:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:149:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 149 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: /usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:149:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 149 | std::auto_ptr pimpl_; @@ -1875,15 +1945,8 @@ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/ciftilib-1.6.0/src/Cifti/CiftiLabelsMap.h:31, - from /build/ciftilib-1.6.0/src/Cifti/CiftiLabelsMap.cxx:28: -/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, - from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.cxx:28: + from /build/ciftilib-1.6.0/src/Cifti/CiftiSeriesMap.h:31, + from /build/ciftilib-1.6.0/src/Cifti/CiftiSeriesMap.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -1899,11 +1962,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/12/memory:76, - from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:69: /usr/include/libxml++-2.6/libxml++/relaxngschema.h:108:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | std::auto_ptr pimpl_; @@ -1918,41 +1976,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:54: -/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:260:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 260 | std::auto_ptr propertyreader; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:73: -/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:159:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:69: -/usr/include/libxml++-2.6/libxml++/relaxngschema.h:108:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:149:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 149 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:70: -/usr/include/libxml++-2.6/libxml++/xsdschema.h:99:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 99 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:73: /usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:159:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr pimpl_; @@ -1970,8 +1993,8 @@ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, - from /build/ciftilib-1.6.0/src/Cifti/CiftiXML.cxx:28: + from /build/ciftilib-1.6.0/src/Cifti/CiftiLabelsMap.h:31, + from /build/ciftilib-1.6.0/src/Cifti/CiftiLabelsMap.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2008,11 +2031,17 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:149:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 149 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here + 64 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.h:31, - from /build/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.cxx:28: + from /build/ciftilib-1.6.0/src/Cifti/MetaData.h:34, + from /build/ciftilib-1.6.0/src/Cifti/MetaData.cxx:32: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2028,13 +2057,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:149:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 149 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here - 64 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:69: /usr/include/libxml++-2.6/libxml++/relaxngschema.h:108:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | std::auto_ptr pimpl_; @@ -2049,7 +2071,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -[ 56%] Building CXX object CMakeFiles/Cifti.dir/src/Common/AString.cxx.o In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:73: /usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:159:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr pimpl_; @@ -2057,7 +2078,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/AString.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/AString.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/AString.cxx.o -c /build/ciftilib-1.6.0/src/Common/AString.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: /usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:149:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 149 | std::auto_ptr pimpl_; @@ -2112,10 +2132,16 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ +[ 60%] Building CXX object CMakeFiles/Cifti.dir/src/Common/BinaryFile.cxx.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/BinaryFile.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/BinaryFile.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/BinaryFile.cxx.o -c /build/ciftilib-1.6.0/src/Common/BinaryFile.cxx +[ 63%] Building CXX object CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o -c /build/ciftilib-1.6.0/src/Common/CiftiException.cxx +[ 66%] Building CXX object CMakeFiles/Cifti.dir/src/Common/FloatMatrix.cxx.o +/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/FloatMatrix.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/FloatMatrix.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/FloatMatrix.cxx.o -c /build/ciftilib-1.6.0/src/Common/FloatMatrix.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/ciftilib-1.6.0/src/Cifti/MetaData.h:34, - from /build/ciftilib-1.6.0/src/Cifti/MetaData.cxx:32: + from /build/ciftilib-1.6.0/src/Cifti/VolumeSpace.h:33, + from /build/ciftilib-1.6.0/src/Cifti/VolumeSpace.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2159,12 +2185,6 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -[ 60%] Building CXX object CMakeFiles/Cifti.dir/src/Common/BinaryFile.cxx.o -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/BinaryFile.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/BinaryFile.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/BinaryFile.cxx.o -c /build/ciftilib-1.6.0/src/Common/BinaryFile.cxx -[ 63%] Building CXX object CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o -c /build/ciftilib-1.6.0/src/Common/CiftiException.cxx -[ 66%] Building CXX object CMakeFiles/Cifti.dir/src/Common/FloatMatrix.cxx.o -/usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/FloatMatrix.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/FloatMatrix.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/FloatMatrix.cxx.o -c /build/ciftilib-1.6.0/src/Common/FloatMatrix.cxx [ 70%] Building CXX object CMakeFiles/Cifti.dir/src/Common/MathFunctions.cxx.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -fPIC -std=gnu++11 -MD -MT CMakeFiles/Cifti.dir/src/Common/MathFunctions.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/MathFunctions.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/MathFunctions.cxx.o -c /build/ciftilib-1.6.0/src/Common/MathFunctions.cxx [ 73%] Building CXX object CMakeFiles/Cifti.dir/src/Common/Vector3D.cxx.o @@ -2227,32 +2247,32 @@ make -f example/CMakeFiles/xmlinfo.dir/build.make example/CMakeFiles/xmlinfo.dir/depend make[3]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ciftilib-1.6.0 /build/ciftilib-1.6.0/example /build/ciftilib-1.6.0/obj-x86_64-linux-gnu /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/CMakeFiles/rewrite.dir/DependInfo.cmake --color= +make -f example/CMakeFiles/datatype.dir/build.make example/CMakeFiles/datatype.dir/depend make[3]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ciftilib-1.6.0 /build/ciftilib-1.6.0/example /build/ciftilib-1.6.0/obj-x86_64-linux-gnu /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/CMakeFiles/xmlinfo.dir/DependInfo.cmake --color= -make -f example/CMakeFiles/datatype.dir/build.make example/CMakeFiles/datatype.dir/depend make[3]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/ciftilib-1.6.0 /build/ciftilib-1.6.0/example /build/ciftilib-1.6.0/obj-x86_64-linux-gnu /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/CMakeFiles/datatype.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' -make -f example/CMakeFiles/xmlinfo.dir/build.make example/CMakeFiles/xmlinfo.dir/build +make -f example/CMakeFiles/rewrite.dir/build.make example/CMakeFiles/rewrite.dir/build make[3]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' -make -f example/CMakeFiles/datatype.dir/build.make example/CMakeFiles/datatype.dir/build -make[3]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' -make -f example/CMakeFiles/rewrite.dir/build.make example/CMakeFiles/rewrite.dir/build +make -f example/CMakeFiles/xmlinfo.dir/build.make example/CMakeFiles/xmlinfo.dir/build +make[3]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' +make -f example/CMakeFiles/datatype.dir/build.make example/CMakeFiles/datatype.dir/build make[3]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' -[ 83%] Building CXX object example/CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o +[ 83%] Building CXX object example/CMakeFiles/rewrite.dir/rewrite.cxx.o +cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/example -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/rewrite.dir/rewrite.cxx.o -MF CMakeFiles/rewrite.dir/rewrite.cxx.o.d -o CMakeFiles/rewrite.dir/rewrite.cxx.o -c /build/ciftilib-1.6.0/example/rewrite.cxx +[ 86%] Building CXX object example/CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/example -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -MF CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o.d -o CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -c /build/ciftilib-1.6.0/example/xmlinfo.cxx -[ 86%] Building CXX object example/CMakeFiles/datatype.dir/datatype.cxx.o +[ 90%] Building CXX object example/CMakeFiles/datatype.dir/datatype.cxx.o cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/example -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/datatype.dir/datatype.cxx.o -MF CMakeFiles/datatype.dir/datatype.cxx.o.d -o CMakeFiles/datatype.dir/datatype.cxx.o -c /build/ciftilib-1.6.0/example/datatype.cxx -[ 90%] Building CXX object example/CMakeFiles/rewrite.dir/rewrite.cxx.o -cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/ciftilib-1.6.0/example -I/build/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/rewrite.dir/rewrite.cxx.o -MF CMakeFiles/rewrite.dir/rewrite.cxx.o.d -o CMakeFiles/rewrite.dir/rewrite.cxx.o -c /build/ciftilib-1.6.0/example/rewrite.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:53, from /build/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, from /build/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, from /build/ciftilib-1.6.0/src/CiftiFile.h:34, - from /build/ciftilib-1.6.0/example/rewrite.cxx:1: + from /build/ciftilib-1.6.0/example/xmlinfo.cxx:1: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2301,7 +2321,7 @@ from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, from /build/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, from /build/ciftilib-1.6.0/src/CiftiFile.h:34, - from /build/ciftilib-1.6.0/example/xmlinfo.cxx:1: + from /build/ciftilib-1.6.0/example/datatype.cxx:1: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2350,7 +2370,7 @@ from /build/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, from /build/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, from /build/ciftilib-1.6.0/src/CiftiFile.h:34, - from /build/ciftilib-1.6.0/example/datatype.cxx:1: + from /build/ciftilib-1.6.0/example/rewrite.cxx:1: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:224:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 224 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2394,21 +2414,21 @@ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ -[ 93%] Linking CXX executable rewrite -cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/rewrite.dir/link.txt --verbose=1 -/usr/bin/c++ -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/rewrite.dir/rewrite.cxx.o -o rewrite -Wl,-rpath,/build/ciftilib-1.6.0/obj-x86_64-linux-gnu ../libCifti.so.1.5 -lxml++-2.6 -lglibmm-2.4 -lglib-2.0 -lsigc-2.0 -lxml2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 -lz -make[3]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' -[ 93%] Built target rewrite -[ 96%] Linking CXX executable datatype +[ 93%] Linking CXX executable datatype cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/datatype.dir/link.txt --verbose=1 /usr/bin/c++ -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/datatype.dir/datatype.cxx.o -o datatype -Wl,-rpath,/build/ciftilib-1.6.0/obj-x86_64-linux-gnu ../libCifti.so.1.5 -lxml++-2.6 -lglibmm-2.4 -lglib-2.0 -lsigc-2.0 -lxml2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 -lz -[100%] Linking CXX executable xmlinfo +[ 96%] Linking CXX executable xmlinfo cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlinfo.dir/link.txt --verbose=1 /usr/bin/c++ -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -o xmlinfo -Wl,-rpath,/build/ciftilib-1.6.0/obj-x86_64-linux-gnu ../libCifti.so.1.5 -lxml++-2.6 -lglibmm-2.4 -lglib-2.0 -lsigc-2.0 -lxml2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 -lz make[3]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' -[100%] Built target datatype +[ 96%] Built target datatype +[100%] Linking CXX executable rewrite +cd /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/rewrite.dir/link.txt --verbose=1 +/usr/bin/c++ -fopenmp -g -O2 -ffile-prefix-map=/build/ciftilib-1.6.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic CMakeFiles/rewrite.dir/rewrite.cxx.o -o rewrite -Wl,-rpath,/build/ciftilib-1.6.0/obj-x86_64-linux-gnu ../libCifti.so.1.5 -lxml++-2.6 -lglibmm-2.4 -lglib-2.0 -lsigc-2.0 -lxml2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.74.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.74.0 -lz make[3]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' [100%] Built target xmlinfo +make[3]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' +[100%] Built target rewrite make[2]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' @@ -2442,35 +2462,35 @@ 1: Surface CORTEX_LEFT: 30424 out of 32492 vertices 1: Surface CORTEX_RIGHT: 30527 out of 32492 vertices 1: - 1/35 Test #1: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .................. Passed 0.33 sec + 1/35 Test #1: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .................. Passed 1.21 sec test 2 Start 2: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii 2: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "LITTLE" 2: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 2: Test timeout computed to be: 10000000 - 2/35 Test #2: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii ........ Passed 0.61 sec + 2/35 Test #2: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii ........ Passed 1.49 sec test 3 Start 3: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii 3: Test command: /usr/bin/cmake "-Dgood_sum=39ecfba4c1dade1a2ce3e95b325bd8b1" "-Dcheck_file=little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 3: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 3: Test timeout computed to be: 10000000 - 3/35 Test #3: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .... Passed 0.06 sec + 3/35 Test #3: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .... Passed 0.08 sec test 4 Start 4: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii 4: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "BIG" 4: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 4: Test timeout computed to be: 10000000 - 4/35 Test #4: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii ........... Passed 0.61 sec + 4/35 Test #4: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii ........... Passed 0.99 sec test 6 Start 6: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii 6: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" 6: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 6: Test timeout computed to be: 10000000 - 5/35 Test #6: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .............. Passed 0.69 sec + 5/35 Test #6: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .............. Passed 0.84 sec test 5 Start 5: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii @@ -2500,49 +2520,49 @@ 8: Surface CORTEX_LEFT: 30424 out of 32492 vertices 8: Surface CORTEX_RIGHT: 30527 out of 32492 vertices 8: - 8/35 Test #8: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ................. Passed 0.31 sec + 8/35 Test #8: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ................. Passed 0.81 sec test 9 Start 9: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii 9: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "LITTLE" 9: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 9: Test timeout computed to be: 10000000 - 9/35 Test #9: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ....... Passed 0.39 sec + 9/35 Test #9: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ....... Passed 1.33 sec test 10 Start 10: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii 10: Test command: /usr/bin/cmake "-Dgood_sum=921a42e4181052ef4f211d389a2e9328" "-Dcheck_file=little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 10: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 10: Test timeout computed to be: 10000000 -10/35 Test #10: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ... Passed 0.04 sec +10/35 Test #10: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ... Passed 0.07 sec test 11 Start 11: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii 11: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "BIG" 11: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 11: Test timeout computed to be: 10000000 -11/35 Test #11: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii .......... Passed 0.73 sec +11/35 Test #11: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii .......... Passed 0.97 sec test 13 Start 13: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii 13: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" 13: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 13: Test timeout computed to be: 10000000 -12/35 Test #13: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ............. Passed 0.40 sec +12/35 Test #13: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ............. Passed 0.94 sec test 12 Start 12: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii 12: Test command: /usr/bin/cmake "-Dgood_sum=ca4cfb02fb7f0d8f167f546aab85e91d" "-Dcheck_file=big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 12: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 12: Test timeout computed to be: 10000000 -13/35 Test #12: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ...... Passed 0.03 sec +13/35 Test #12: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ...... Passed 0.07 sec test 14 Start 14: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii 14: Test command: /usr/bin/cmake "-Dgood_sum=f321156573ed8f165b208d84769bfd9a" "-Dcheck_file=datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 14: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 14: Test timeout computed to be: 10000000 -14/35 Test #14: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ......... Passed 0.03 sec +14/35 Test #14: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ......... Passed 0.07 sec test 15 Start 15: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii @@ -2610,35 +2630,35 @@ 15: Index 52, name 'ER_FRB08': 206 vertices, 0 voxels 15: Index 53, name '13b_OFP03': 131 vertices, 0 voxels 15: -15/35 Test #15: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ................. Passed 0.10 sec +15/35 Test #15: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ................. Passed 0.41 sec test 16 Start 16: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii 16: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "LITTLE" 16: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 16: Test timeout computed to be: 10000000 -16/35 Test #16: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ....... Passed 0.24 sec +16/35 Test #16: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ....... Passed 0.40 sec test 17 Start 17: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii 17: Test command: /usr/bin/cmake "-Dgood_sum=764c816004ebe23d188d98f9f29c7337" "-Dcheck_file=little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 17: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 17: Test timeout computed to be: 10000000 -17/35 Test #17: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ... Passed 0.03 sec +17/35 Test #17: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ... Passed 0.07 sec test 18 Start 18: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii 18: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "big-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "BIG" 18: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 18: Test timeout computed to be: 10000000 -18/35 Test #18: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii .......... Passed 0.17 sec +18/35 Test #18: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii .......... Passed 0.42 sec test 20 Start 20: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii 20: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" 20: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 20: Test timeout computed to be: 10000000 -19/35 Test #20: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ............. Passed 0.27 sec +19/35 Test #20: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ............. Passed 0.38 sec test 19 Start 19: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii @@ -2652,7 +2672,7 @@ 21: Test command: /usr/bin/cmake "-Dgood_sum=794d60d9d397fe341e18313efeeac5ea" "-Dcheck_file=datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 21: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 21: Test timeout computed to be: 10000000 -21/35 Test #21: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ......... Passed 0.06 sec +21/35 Test #21: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ......... Passed 0.07 sec test 22 Start 22: info-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii @@ -2668,49 +2688,49 @@ 22: Surface CORTEX_LEFT: 32492 out of 32492 vertices 22: Surface CORTEX_RIGHT: 32492 out of 32492 vertices 22: -22/35 Test #22: info-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ..................... Passed 0.58 sec +22/35 Test #22: info-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ..................... Passed 1.06 sec test 23 Start 23: rewrite-little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii 23: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "LITTLE" 23: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 23: Test timeout computed to be: 10000000 -23/35 Test #23: rewrite-little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ........... Passed 0.94 sec +23/35 Test #23: rewrite-little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ........... Passed 1.79 sec test 24 Start 24: rewrite-little-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii 24: Test command: /usr/bin/cmake "-Dgood_sum=6fabac021e377efd35dede7198feefd4" "-Dcheck_file=little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 24: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 24: Test timeout computed to be: 10000000 -24/35 Test #24: rewrite-little-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ....... Passed 0.06 sec +24/35 Test #24: rewrite-little-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ....... Passed 0.07 sec test 25 Start 25: rewrite-big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii 25: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "BIG" 25: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 25: Test timeout computed to be: 10000000 -25/35 Test #25: rewrite-big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii .............. Passed 0.94 sec +25/35 Test #25: rewrite-big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii .............. Passed 1.20 sec test 27 Start 27: datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii 27: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/ciftilib-1.6.0/example/data/Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" 27: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 27: Test timeout computed to be: 10000000 -26/35 Test #27: datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ................. Passed 0.88 sec +26/35 Test #27: datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ................. Passed 1.15 sec test 26 Start 26: rewrite-big-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii 26: Test command: /usr/bin/cmake "-Dgood_sum=e761d405c945e724b37f96e356dc19ad" "-Dcheck_file=big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 26: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 26: Test timeout computed to be: 10000000 -27/35 Test #26: rewrite-big-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii .......... Passed 0.05 sec +27/35 Test #26: rewrite-big-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii .......... Passed 0.07 sec test 28 Start 28: datatype-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii 28: Test command: /usr/bin/cmake "-Dgood_sum=ea43725139bd3e152197fdf22c5e72e7" "-Dcheck_file=datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 28: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 28: Test timeout computed to be: 10000000 -28/35 Test #28: datatype-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ............. Passed 0.06 sec +28/35 Test #28: datatype-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ............. Passed 0.07 sec test 29 Start 29: info-ones.dscalar.nii @@ -2743,53 +2763,53 @@ 29: Voxels THALAMUS_LEFT: 1288 voxels 29: Voxels THALAMUS_RIGHT: 1248 voxels 29: -29/35 Test #29: info-ones.dscalar.nii ...................................................... Passed 0.89 sec +29/35 Test #29: info-ones.dscalar.nii ...................................................... Passed 1.64 sec test 30 Start 30: rewrite-little-ones.dscalar.nii 30: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/ones.dscalar.nii" "little-ones.dscalar.nii" "LITTLE" 30: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 30: Test timeout computed to be: 10000000 -30/35 Test #30: rewrite-little-ones.dscalar.nii ............................................ Passed 1.40 sec +30/35 Test #30: rewrite-little-ones.dscalar.nii ............................................ Passed 1.25 sec test 31 Start 31: rewrite-little-md5-ones.dscalar.nii 31: Test command: /usr/bin/cmake "-Dgood_sum=fe0cbb768e26aa12a0e03990f4f50a30" "-Dcheck_file=little-ones.dscalar.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 31: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 31: Test timeout computed to be: 10000000 -31/35 Test #31: rewrite-little-md5-ones.dscalar.nii ........................................ Passed 0.05 sec +31/35 Test #31: rewrite-little-md5-ones.dscalar.nii ........................................ Passed 0.06 sec test 32 Start 32: rewrite-big-ones.dscalar.nii 32: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/ciftilib-1.6.0/example/data/ones.dscalar.nii" "big-ones.dscalar.nii" "BIG" 32: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 32: Test timeout computed to be: 10000000 -32/35 Test #32: rewrite-big-ones.dscalar.nii ............................................... Passed 0.99 sec +32/35 Test #32: rewrite-big-ones.dscalar.nii ............................................... Passed 1.46 sec test 34 Start 34: datatype-ones.dscalar.nii 34: Test command: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/ciftilib-1.6.0/example/data/ones.dscalar.nii" "datatype-ones.dscalar.nii" 34: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 34: Test timeout computed to be: 10000000 -33/35 Test #34: datatype-ones.dscalar.nii .................................................. Passed 1.38 sec +33/35 Test #34: datatype-ones.dscalar.nii .................................................. Passed 1.31 sec test 33 Start 33: rewrite-big-md5-ones.dscalar.nii 33: Test command: /usr/bin/cmake "-Dgood_sum=2e4efa4e36cdb13f514c265e6c9c8c4b" "-Dcheck_file=big-ones.dscalar.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 33: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 33: Test timeout computed to be: 10000000 -34/35 Test #33: rewrite-big-md5-ones.dscalar.nii ........................................... Passed 0.06 sec +34/35 Test #33: rewrite-big-md5-ones.dscalar.nii ........................................... Passed 0.07 sec test 35 Start 35: datatype-md5-ones.dscalar.nii 35: Test command: /usr/bin/cmake "-Dgood_sum=4dbb23ab2564ba8c9f242a3cb6036600" "-Dcheck_file=datatype-ones.dscalar.nii" "-P" "/build/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" 35: Working Directory: /build/ciftilib-1.6.0/obj-x86_64-linux-gnu/example 35: Test timeout computed to be: 10000000 -35/35 Test #35: datatype-md5-ones.dscalar.nii .............................................. Passed 0.06 sec +35/35 Test #35: datatype-md5-ones.dscalar.nii .............................................. Passed 0.07 sec 100% tests passed, 0 tests failed out of 35 -Total Test time (real) = 13.63 sec +Total Test time (real) = 22.30 sec make[2]: Leaving directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/ciftilib-1.6.0' debian/rules override_dh_auto_test-indep @@ -2805,7 +2825,7 @@ DO NOTHING IN dh_auto_install in binary independent package since this only has docs make[1]: Leaving directory '/build/ciftilib-1.6.0' dh_auto_install -Nlibcifti-doc - cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/ciftilib-1.6.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j15 install DESTDIR=/build/ciftilib-1.6.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ciftilib-1.6.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/ciftilib-1.6.0 -B/build/ciftilib-1.6.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2889,10 +2909,10 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libcifti0' in '../libcifti0_1.6.0-2_amd64.deb'. dpkg-deb: building package 'libcifti-dev' in '../libcifti-dev_1.6.0-2_amd64.deb'. -dpkg-deb: building package 'libcifti0-dbgsym' in '../libcifti0-dbgsym_1.6.0-2_amd64.deb'. dpkg-deb: building package 'libcifti-doc' in '../libcifti-doc_1.6.0-2_all.deb'. +dpkg-deb: building package 'libcifti0-dbgsym' in '../libcifti0-dbgsym_1.6.0-2_amd64.deb'. +dpkg-deb: building package 'libcifti0' in '../libcifti0_1.6.0-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ciftilib_1.6.0-2_amd64.buildinfo dpkg-genchanges --build=binary -O../ciftilib_1.6.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2900,12 +2920,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3420219/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3420219/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3568807 and its subdirectories -I: Current time: Thu May 16 09:59:46 -12 2024 -I: pbuilder-time-stamp: 1715896786 +I: removing directory /srv/workspace/pbuilder/3420219 and its subdirectories +I: Current time: Sat Apr 15 05:42:12 +14 2023 +I: pbuilder-time-stamp: 1681486932