Diff of the two buildlogs: -- --- b1/build.log 2023-06-08 13:55:21.271264323 +0000 +++ b2/build.log 2023-06-08 13:56:50.119382126 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 10 08:14:58 -12 2024 -I: pbuilder-time-stamp: 1720642498 +I: Current time: Fri Jun 9 03:55:24 +14 2023 +I: pbuilder-time-stamp: 1686232524 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./garlic_1.6.orig.tar.gz] I: copying [./garlic_1.6-3.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Jan 2 01:48:19 2019 -12 +gpgv: Signature made Thu Jan 3 03:48:19 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key @@ -28,135 +28,167 @@ dpkg-source: info: applying hardening.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2029074/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2794268/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 9 03:56 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2794268/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2794268/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='cd08dd226382432b89c27a5b36417129' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2029074' - PS1='# ' - PS2='> ' + INVOCATION_ID=53ab84f2d9504909939b99e650e7befc + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2794268 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2TkwJwXK/pbuilderrc_ecxG --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2TkwJwXK/b1 --logfile b1/build.log garlic_1.6-3.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2TkwJwXK/pbuilderrc_VDXZ --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2TkwJwXK/b2 --logfile b2/build.log --extrapackages usrmerge garlic_1.6-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos5-amd64 6.1.0-0.deb11.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.20-2~bpo11+1 (2023-04-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/2029074/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Apr 24 11:23 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Apr 24 11:23 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 2022 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Jun 9 03:56 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 2022 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/2794268/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -238,7 +270,7 @@ Get: 42 http://deb.debian.org/debian bookworm/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libx11-dev amd64 2:1.8.4-2 [836 kB] -Fetched 21.9 MB in 1s (20.0 MB/s) +Fetched 21.9 MB in 0s (52.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) @@ -431,10 +463,17 @@ Reading package lists... Building dependency tree... Reading state information... +usrmerge is already the newest version (35). fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/garlic-1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../garlic_1.6-3_source.changes +I: user script /srv/workspace/pbuilder/2794268/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/2794268/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/garlic-1.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../garlic_1.6-3_source.changes dpkg-buildpackage: info: source package garlic dpkg-buildpackage: info: source version 1.6-3 dpkg-buildpackage: info: source distribution unstable @@ -456,7 +495,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/garlic-1.6' dh_auto_build -- CCOPT="-g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security" - make -j16 "INSTALL=install --strip-program=true" "CCOPT=-g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security" + make -j15 "INSTALL=install --strip-program=true" "CCOPT=-g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security" make[2]: Entering directory '/build/garlic-1.6' gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security garlic.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security print_usage.c @@ -474,13 +513,6 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security errmsg.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security warnmsg.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security openfile_r.c -openfile_r.c: In function 'OpenFileForReading_': -openfile_r.c:123:31: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 123 | path_nameA[n] = '\0'; - | ~~~~~~~~~~~~~~^~~~~~ -openfile_r.c:52:17: note: at offset [-2147483648, -1] into destination object 'path_nameA' of size 1024 - 52 | char path_nameA[STRINGSIZE]; - | ^~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_config.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security open_config_file.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_int.c @@ -490,6 +522,13 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_phrase.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_index.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_rot_steps.c +openfile_r.c: In function 'OpenFileForReading_': +openfile_r.c:123:31: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 123 | path_nameA[n] = '\0'; + | ~~~~~~~~~~~~~~^~~~~~ +openfile_r.c:52:17: note: at offset [-2147483648, -1] into destination object 'path_nameA' of size 1024 + 52 | char path_nameA[STRINGSIZE]; + | ^~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_trans_steps.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_slab_steps.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_fading_steps.c @@ -538,7 +577,6 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotation_angle.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security rotate.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translation_shift.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translate.c alloc_nearest.c: In function 'AllocateNearest_': alloc_nearest.c:70:39: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 70 | fprintf (stderr, "A total of %d bytes required.\n", mem_size); @@ -546,6 +584,7 @@ | | | | int size_t {aka long unsigned int} | %ld +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security translate.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security slab_shift.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_back_slab.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security move_front_slab.c @@ -625,6 +664,11 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security catch.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security discard.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security full_select.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security include.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chains.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_ranges.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_token.c load.c: In function 'Load_': load.c:122:60: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] 122 | sprintf (runtimeSP->messageA, "Unable to open file %s!", tokenA); @@ -632,11 +676,6 @@ load.c:122:9: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024 122 | sprintf (runtimeSP->messageA, "Unable to open file %s!", tokenA); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security full_select.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security include.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chains.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_ranges.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_token.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_serials.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security residue_names.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atom_names.c @@ -651,6 +690,13 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security special_select.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_hetero.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_element.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_atoms.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security quick_select.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security replace_command.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bonds.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security execute_script.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_rotate.c color.c: In function 'Color_': color.c:106:32: warning: '%s' directive writing up to 1023 bytes into a region of size 1011 [-Wformat-overflow=] 106 | "Color scheme %s is not available!", tokenA); @@ -660,14 +706,12 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 | "Color scheme %s is not available!", tokenA); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_atoms.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security quick_select.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security replace_command.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security atoms.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bonds.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security execute_script.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_rotate.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_translate.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_slab.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_fading.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security log.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_backbone.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security background.c execute_script.c: In function 'ExecuteScript_': execute_script.c:101:48: warning: '%s' directive writing up to 1023 bytes into a region of size 1002 [-Wformat-overflow=] 101 | "Unable to open script %s!", tokenA); @@ -677,14 +721,11 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | "Unable to open script %s!", tokenA); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_slab.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security comm_fading.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security log.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_backbone.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security background.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security text_background.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security text_foreground.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security change_slab.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security change_fading.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security full_colors.c prepare_backbone.c: In function 'PrepareBackbone_': prepare_backbone.c:103:39: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 103 | fprintf (stderr, "A total of %d bytes required.\n", mem_size); @@ -692,8 +733,8 @@ | | | | int size_t {aka long unsigned int} | %ld -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security change_fading.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security full_colors.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_old.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security font.c log.c: In function 'Log_': log.c:130:64: warning: '%s' directive writing up to 1023 bytes into a region of size 1000 [-Wformat-overflow=] 130 | sprintf (runtimeSP->messageA, "Unable to open log file %s!", tokenA); @@ -701,8 +742,6 @@ log.c:130:9: note: 'sprintf' output between 26 and 1049 bytes into a destination of size 1024 130 | sprintf (runtimeSP->messageA, "Unable to open log file %s!", tokenA); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_old.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security font.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security cpk.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security zebra.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security chain.c @@ -714,9 +753,6 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security backbone.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hybonds.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security generate_hybonds.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hybond_style.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security show_backbone.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hide_backbone.c font.c: In function 'Font_': font.c:87:45: warning: '%s' directive writing up to 1023 bytes into a region of size 1019 [-Wformat-overflow=] 87 | sprintf (runtimeSP->messageA, "Font %s is not available!", tokenA); @@ -724,12 +760,8 @@ font.c:87:9: note: 'sprintf' output between 24 and 1047 bytes into a destination of size 1024 87 | sprintf (runtimeSP->messageA, "Font %s is not available!", tokenA); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pdb_id.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security generate_plane.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security stereo.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security mono.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security position.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_doubles.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hybond_style.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security show_backbone.c comm_backbone.c: In function 'CommandBackbone_': comm_backbone.c:106:52: warning: '%s' directive writing up to 1023 bytes into a region of size 1000 [-Wformat-overflow=] 106 | "Backbone drawing style \"%s\" not available!", @@ -743,10 +775,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 | tokenA); | ~~~~~~~ -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security title.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security free_runtime.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_titles.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security foreground.c hybonds.c: In function 'HydrogenBonds_': hybonds.c:94:57: warning: '%s' directive writing up to 1023 bytes into a region of size 995 [-Wformat-overflow=] 94 | "Hydrogen bond drawing style \"%s\" not available!", @@ -760,6 +788,17 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 | tokenA); | ~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security hide_backbone.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security pdb_id.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security generate_plane.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security stereo.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security mono.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security position.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_doubles.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security title.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security free_runtime.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_titles.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security foreground.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security prepare_oc.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_complement.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security labels.c @@ -792,9 +831,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security center.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security write_line.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security big_spheres.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security tag.c labels.c: In function 'Labels_': labels.c:81:35: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] 81 | "Keyword %s not recognized!", @@ -808,6 +844,9 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 | tokenA); | ~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security write_line.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security big_spheres.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security tag.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_tags.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security tag_position.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security button_press.c @@ -828,9 +867,6 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security phi_from_cncac.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security psi_from_ncaco.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security vector_product.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security absolute_value.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security scalar_product.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security omega_from_cacnca.c load_sequence.c: In function 'LoadSequence_': load_sequence.c:139:53: warning: '%s' directive writing between 4 and 1023 bytes into a region of size 1006 [-Wformat-overflow=] 139 | "Bad residue name: %s", tokenA); @@ -840,6 +876,9 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | "Bad residue name: %s", tokenA); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security absolute_value.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security scalar_product.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security omega_from_cacnca.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_cis_trans.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ramachandran.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_ramachandran.c @@ -863,16 +902,16 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security save_seq_w_numbers.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ssb.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_alternate.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_model.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_model.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security window.c draw_venn.c: In function 'DrawVenn_': +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_model.c draw_venn.c:481:28: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 481 | sprintf (stringA, "TOTAL: %d", residuesN); | ~^ ~~~~~~~~~ | | | | int size_t {aka long unsigned int} | %ld +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_model.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security window.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security plot.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_plots.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security weighted_hydrophobicity.c @@ -921,7 +960,6 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security open_template_file.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security read_template_file.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security ex_template_residues.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security count_template_res.c open_template_file.c: In function 'OpenTemplateFile_': open_template_file.c:68:1: warning: 'strncat' specified bound 13 equals source length [-Wstringop-overflow=] 68 | strncat (template_file_nameA, "/residues.pdb", 13); @@ -929,6 +967,7 @@ open_template_file.c:79:1: warning: 'strncat' specified bound 20 equals source length [-Wstringop-overflow=] 79 | strncat (template_file_nameA, "/garlic/residues.pdb", 20); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security count_template_res.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security create_structure.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security required_atoms.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security copy_template_atoms.c @@ -955,6 +994,11 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_squid.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security draw_seahorse.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security are_atoms_bound.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_partners.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_phi.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_psi.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cac.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security small_ramachandran.c replace.c: In function 'Replace_': replace.c:204:67: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 204 | "%d resid. selected but sequence buffer contains %d!", @@ -966,11 +1010,6 @@ | ~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka long unsigned int} -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security bond_partners.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_phi.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_psi.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_cac.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security small_ramachandran.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security edit_omega.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security small_omega.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security extract_h.c @@ -1061,6 +1100,11 @@ gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security color_size.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security command_dump.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security is_aromatic.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2c3.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2cz3.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2nz3.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c4.c +gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz4.c command_dump.c: In function 'Dump_': command_dump.c:195:57: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 195 | if (output_fileF) fprintf (outfileP, "%8d", residueI); @@ -1068,17 +1112,12 @@ | | | | int size_t {aka long unsigned int} | %8ld -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2c3.c command_dump.c:196:42: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' {aka 'long unsigned int'} [-Wformat=] 196 | else fprintf (stdout, "%8d", residueI); | ~~^ ~~~~~~~~ | | | | int size_t {aka long unsigned int} | %8ld -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2cz3.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_2nz3.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c4.c -gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz4.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3nz4.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3c5.c gcc -c -g -O2 -ffile-prefix-map=/build/garlic-1.6=. -fstack-protector-strong -Wformat -Werror=format-security select_3cz5.c @@ -1145,8 +1184,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'garlic-dbgsym' in '../garlic-dbgsym_1.6-3_amd64.deb'. dpkg-deb: building package 'garlic' in '../garlic_1.6-3_amd64.deb'. +dpkg-deb: building package 'garlic-dbgsym' in '../garlic-dbgsym_1.6-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../garlic_1.6-3_amd64.buildinfo dpkg-genchanges --build=binary -O../garlic_1.6-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1154,12 +1193,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2794268/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2794268/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2029074 and its subdirectories -I: Current time: Wed Jul 10 08:18:37 -12 2024 -I: pbuilder-time-stamp: 1720642717 +I: removing directory /srv/workspace/pbuilder/2794268 and its subdirectories +I: Current time: Fri Jun 9 03:56:49 +14 2023 +I: pbuilder-time-stamp: 1686232609