Diff of the two buildlogs: -- --- b1/build.log 2023-04-20 11:44:24.600090014 +0000 +++ b2/build.log 2023-04-20 11:47:48.411048966 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 22 06:03:27 -12 2024 -I: pbuilder-time-stamp: 1716401007 +I: Current time: Fri Apr 21 01:44:27 +14 2023 +I: pbuilder-time-stamp: 1681991067 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration @@ -16,7 +16,7 @@ I: copying [./igv_2.16.0+dfsg.orig.tar.xz] I: copying [./igv_2.16.0+dfsg-1.debian.tar.xz] I: Extracting source -gpgv: Signature made Wed Feb 1 10:23:17 2023 -12 +gpgv: Signature made Thu Feb 2 12:23:17 2023 +14 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./igv_2.16.0+dfsg-1.dsc: no acceptable signature found @@ -35,135 +35,167 @@ dpkg-source: info: applying wrong_override.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3279105/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3081976/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 21 01:44 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3081976/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3081976/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' - DISTRIBUTION='bookworm' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="15" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.15(1)-release' + BUILDDIR=/build + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' + DIRSTACK=() + DISTRIBUTION=bookworm + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2720655f29b045ffbbe1819acf6d7c68' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3279105' - PS1='# ' - PS2='> ' + INVOCATION_ID=ad88446844a24c0c8c9bedd10cbfb4d3 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3081976 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0LWn0eNt/pbuilderrc_A8Tk --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0LWn0eNt/b1 --logfile b1/build.log igv_2.16.0+dfsg-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0LWn0eNt/pbuilderrc_mJo7 --distribution bookworm --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0LWn0eNt/b2 --logfile b2/build.log --extrapackages usrmerge igv_2.16.0+dfsg-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux + Linux i-capture-the-hostname 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 - -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff - -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep - -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep - -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep - -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 - -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover - lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore - -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore - -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat - -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp - -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod - -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown - -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp - -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash - -rwxr-xr-x 1 root root 121904 Sep 20 2022 date - -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd - -rwxr-xr-x 1 root root 102200 Sep 20 2022 df - -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir - -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg - lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname - lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname - -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo - -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep - -rwxr-xr-x 1 root root 35664 Sep 20 2022 false - -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep - -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt - -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount - -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep - -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip - -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe - -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip - -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname - -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln - -rwxr-xr-x 1 root root 53024 Mar 23 2023 login - -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls - -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk - -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir - -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod - -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp - -rwxr-xr-x 1 root root 59712 Mar 22 2023 more - -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount - -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint - -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv - lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname - lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 - -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd - lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash - -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink - -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm - -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir - -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts - -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed - lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash - -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep - -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty - -rwsr-xr-x 1 root root 72000 Mar 22 2023 su - -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync - -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar - -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile - -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch - -rwxr-xr-x 1 root root 35664 Sep 20 2022 true - -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server - -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount - -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname - -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress - -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir - -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl - lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname - -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat - -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp - -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff - -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep - -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep - -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce - -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep - -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless - -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore - -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew -I: user script /srv/workspace/pbuilder/3279105/tmp/hooks/D02_print_environment finished + -rwxr-xr-x 1 root root 1265648 Feb 13 10:05 bash + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff + -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep + -rwxr-xr-x 1 root root 4893 Nov 28 2021 bzexe + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep + -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep + -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 + -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover + lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore + -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore + -rwxr-xr-x 1 root root 44016 Sep 21 2022 cat + -rwxr-xr-x 1 root root 68656 Sep 21 2022 chgrp + -rwxr-xr-x 1 root root 64496 Sep 21 2022 chmod + -rwxr-xr-x 1 root root 72752 Sep 21 2022 chown + -rwxr-xr-x 1 root root 151152 Sep 21 2022 cp + -rwxr-xr-x 1 root root 125640 Jan 6 03:20 dash + -rwxr-xr-x 1 root root 121904 Sep 21 2022 date + -rwxr-xr-x 1 root root 89240 Sep 21 2022 dd + -rwxr-xr-x 1 root root 102200 Sep 21 2022 df + -rwxr-xr-x 1 root root 151344 Sep 21 2022 dir + -rwxr-xr-x 1 root root 88656 Mar 24 00:02 dmesg + lrwxrwxrwx 1 root root 8 Dec 20 03:33 dnsdomainname -> hostname + lrwxrwxrwx 1 root root 8 Dec 20 03:33 domainname -> hostname + -rwxr-xr-x 1 root root 43856 Sep 21 2022 echo + -rwxr-xr-x 1 root root 41 Jan 25 04:43 egrep + -rwxr-xr-x 1 root root 35664 Sep 21 2022 false + -rwxr-xr-x 1 root root 41 Jan 25 04:43 fgrep + -rwxr-xr-x 1 root root 85600 Mar 24 00:02 findmnt + -rwsr-xr-x 1 root root 35128 Mar 23 22:35 fusermount + -rwxr-xr-x 1 root root 203152 Jan 25 04:43 grep + -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip + -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe + -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip + -rwxr-xr-x 1 root root 22680 Dec 20 03:33 hostname + -rwxr-xr-x 1 root root 72824 Sep 21 2022 ln + -rwxr-xr-x 1 root root 53024 Mar 24 02:40 login + -rwxr-xr-x 1 root root 151344 Sep 21 2022 ls + -rwxr-xr-x 1 root root 207168 Mar 24 00:02 lsblk + -rwxr-xr-x 1 root root 97552 Sep 21 2022 mkdir + -rwxr-xr-x 1 root root 72912 Sep 21 2022 mknod + -rwxr-xr-x 1 root root 43952 Sep 21 2022 mktemp + -rwxr-xr-x 1 root root 59712 Mar 24 00:02 more + -rwsr-xr-x 1 root root 59704 Mar 24 00:02 mount + -rwxr-xr-x 1 root root 18744 Mar 24 00:02 mountpoint + -rwxr-xr-x 1 root root 142968 Sep 21 2022 mv + lrwxrwxrwx 1 root root 8 Dec 20 03:33 nisdomainname -> hostname + lrwxrwxrwx 1 root root 14 Apr 3 20:25 pidof -> /sbin/killall5 + -rwxr-xr-x 1 root root 43952 Sep 21 2022 pwd + lrwxrwxrwx 1 root root 4 Feb 13 10:05 rbash -> bash + -rwxr-xr-x 1 root root 52112 Sep 21 2022 readlink + -rwxr-xr-x 1 root root 72752 Sep 21 2022 rm + -rwxr-xr-x 1 root root 56240 Sep 21 2022 rmdir + -rwxr-xr-x 1 root root 27560 Nov 3 06:31 run-parts + -rwxr-xr-x 1 root root 126424 Jan 6 09:55 sed + lrwxrwxrwx 1 root root 9 Apr 21 01:44 sh -> /bin/bash + -rwxr-xr-x 1 root root 43888 Sep 21 2022 sleep + -rwxr-xr-x 1 root root 85008 Sep 21 2022 stty + -rwsr-xr-x 1 root root 72000 Mar 24 00:02 su + -rwxr-xr-x 1 root root 39824 Sep 21 2022 sync + -rwxr-xr-x 1 root root 531984 Apr 7 04:25 tar + -rwxr-xr-x 1 root root 14520 Nov 3 06:31 tempfile + -rwxr-xr-x 1 root root 109616 Sep 21 2022 touch + -rwxr-xr-x 1 root root 35664 Sep 21 2022 true + -rwxr-xr-x 1 root root 14568 Mar 23 22:35 ulockmgr_server + -rwsr-xr-x 1 root root 35128 Mar 24 00:02 umount + -rwxr-xr-x 1 root root 43888 Sep 21 2022 uname + -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress + -rwxr-xr-x 1 root root 151344 Sep 21 2022 vdir + -rwxr-xr-x 1 root root 72024 Mar 24 00:02 wdctl + lrwxrwxrwx 1 root root 8 Dec 20 03:33 ypdomainname -> hostname + -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat + -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp + -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff + -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep + -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep + -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce + -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep + -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless + -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore + -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew +I: user script /srv/workspace/pbuilder/3081976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -718,7 +750,7 @@ Get: 459 http://deb.debian.org/debian bookworm/main amd64 libprotobuf-java all 3.21.12-3 [1257 kB] Get: 460 http://deb.debian.org/debian bookworm/main amd64 libswing-layout-java all 1.0.4-4.1 [44.4 kB] Get: 461 http://deb.debian.org/debian bookworm/main amd64 openjfx amd64 11.0.11+1-3 [6272 B] -Fetched 606 MB in 7s (85.4 MB/s) +Fetched 606 MB in 10s (59.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libargon2-1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) @@ -2789,8 +2821,19 @@ Writing extended state information... Building tag database... -> Finished parsing the build-deps +Reading package lists... +Building dependency tree... +Reading state information... +usrmerge is already the newest version (35). +0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/igv-2.16.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../igv_2.16.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/3081976/tmp/hooks/A99_set_merged_usr starting +Re-configuring usrmerge... +removed '/etc/unsupported-skip-usrmerge-conversion' +The system has been successfully converted. +I: user script /srv/workspace/pbuilder/3081976/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/igv-2.16.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../igv_2.16.0+dfsg-1_source.changes dpkg-buildpackage: info: source package igv dpkg-buildpackage: info: source version 2.16.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2830,81 +2873,81 @@ mkdir ../../src/main/resources-icons && \ mv *.png ../../src/main/resources-icons/ -** (process:3347705): WARNING **: 06:05:04.826: Unable to create profile directory (Permission denied) (13) -** Message: 06:05:04.838: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 06:05:04.838: Inkscape will run with default settings, and new settings will not be saved. +** (process:3106588): WARNING **: 01:46:34.474: Unable to create profile directory (Permission denied) (13) +** Message: 01:46:34.487: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 01:46:34.488: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3347705): WARNING **: 06:05:05.114: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3106588): WARNING **: 01:46:34.749: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3347705): WARNING **: 06:05:05.115: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3106588): WARNING **: 01:46:34.749: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3347705): Gtk-CRITICAL **: 06:05:05.193: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3106588): Gtk-CRITICAL **: 01:46:34.815: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3347705): WARNING **: 06:05:05.193: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3106588): WARNING **: 01:46:34.815: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3347797): WARNING **: 06:05:05.326: Unable to create profile directory (Permission denied) (13) -** Message: 06:05:05.339: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 06:05:05.339: Inkscape will run with default settings, and new settings will not be saved. +** (process:3106591): WARNING **: 01:46:34.944: Unable to create profile directory (Permission denied) (13) +** Message: 01:46:34.958: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 01:46:34.958: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3347797): WARNING **: 06:05:05.593: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3106591): WARNING **: 01:46:35.216: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3347797): WARNING **: 06:05:05.593: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3106591): WARNING **: 01:46:35.217: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3347797): Gtk-CRITICAL **: 06:05:05.650: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3106591): Gtk-CRITICAL **: 01:46:35.300: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3347797): WARNING **: 06:05:05.650: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3106591): WARNING **: 01:46:35.300: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3348034): WARNING **: 06:05:05.779: Unable to create profile directory (Permission denied) (13) -** Message: 06:05:05.791: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 06:05:05.791: Inkscape will run with default settings, and new settings will not be saved. +** (process:3106641): WARNING **: 01:46:35.460: Unable to create profile directory (Permission denied) (13) +** Message: 01:46:35.478: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 01:46:35.479: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3348034): WARNING **: 06:05:06.041: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3106641): WARNING **: 01:46:35.849: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3348034): WARNING **: 06:05:06.041: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3106641): WARNING **: 01:46:35.849: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3348034): Gtk-CRITICAL **: 06:05:06.097: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3106641): Gtk-CRITICAL **: 01:46:35.933: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3348034): WARNING **: 06:05:06.097: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3106641): WARNING **: 01:46:35.933: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3348173): WARNING **: 06:05:06.228: Unable to create profile directory (Permission denied) (13) -** Message: 06:05:06.241: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 06:05:06.241: Inkscape will run with default settings, and new settings will not be saved. +** (process:3106644): WARNING **: 01:46:36.059: Unable to create profile directory (Permission denied) (13) +** Message: 01:46:36.074: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 01:46:36.074: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3348173): WARNING **: 06:05:06.486: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3106644): WARNING **: 01:46:36.355: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3348173): WARNING **: 06:05:06.486: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3106644): WARNING **: 01:46:36.355: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3348173): Gtk-CRITICAL **: 06:05:06.545: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3106644): Gtk-CRITICAL **: 01:46:36.422: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3348173): WARNING **: 06:05:06.545: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3106644): WARNING **: 01:46:36.423: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. -** (process:3348327): WARNING **: 06:05:06.681: Unable to create profile directory (Permission denied) (13) -** Message: 06:05:06.696: Cannot create profile directory /nonexistent/first-build/.config/inkscape. -** Message: 06:05:06.696: Inkscape will run with default settings, and new settings will not be saved. +** (process:3106783): WARNING **: 01:46:36.567: Unable to create profile directory (Permission denied) (13) +** Message: 01:46:36.582: Cannot create profile directory /nonexistent/second-build/.config/inkscape. +** Message: 01:46:36.582: Inkscape will run with default settings, and new settings will not be saved. Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories -** (inkscape:3348327): WARNING **: 06:05:06.974: Could not create directory '/nonexistent/first-build/.config/inkscape' +** (inkscape:3106783): WARNING **: 01:46:36.864: Could not create directory '/nonexistent/second-build/.config/inkscape' -** (inkscape:3348327): WARNING **: 06:05:06.974: Could not create extension error log file '/nonexistent/first-build/.config/inkscape/extension-errors.log' +** (inkscape:3106783): WARNING **: 01:46:36.864: Could not create extension error log file '/nonexistent/second-build/.config/inkscape/extension-errors.log' -(inkscape:3348327): Gtk-CRITICAL **: 06:05:07.033: Unable to create user data directory '/nonexistent/first-build/.local/share' for storing the recently used files list: Permission denied +(inkscape:3106783): Gtk-CRITICAL **: 01:46:36.928: Unable to create user data directory '/nonexistent/second-build/.local/share' for storing the recently used files list: Permission denied -** (inkscape:3348327): WARNING **: 06:05:07.033: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. +** (inkscape:3106783): WARNING **: 01:46:36.928: Failed to wrap object of type 'GtkRecentManager'. Hint: this error is commonly caused by failing to call a library init() function. make[1]: Leaving directory '/build/igv-2.16.0+dfsg' jh_linkjars -O--buildsystem=gradle dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=16 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=15 jar openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) @@ -2912,18 +2955,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/igv-2.16.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.397 secs. -The client will now receive all logging from the daemon (pid: 3348968). The daemon log file: /build/igv-2.16.0+dfsg/.gradle/daemon/4.4.1/daemon-3348968.out.log +An attempt to start the daemon took 1.227 secs. +The client will now receive all logging from the daemon (pid: 3106947). The daemon log file: /build/igv-2.16.0+dfsg/.gradle/daemon/4.4.1/daemon-3106947.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 16 worker leases. -Creating new cache for fileHashes, path /build/igv-2.16.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@9fd4e37 -Creating new cache for resourceHashesCache, path /build/igv-2.16.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@9fd4e37 -Creating new cache for fileHashes, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@734c96d2 +Using 15 worker leases. +Creating new cache for fileHashes, path /build/igv-2.16.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@221191e9 +Creating new cache for resourceHashesCache, path /build/igv-2.16.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@221191e9 +Creating new cache for fileHashes, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7aad0b5 Starting Build Compiling initialization script '/build/igv-2.16.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/igv-2.16.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@60bc3052 +Creating new cache for metadata-1.1/results, path /build/igv-2.16.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@677b8309 Compiling initialization script '/build/igv-2.16.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/igv-2.16.0+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/igv-2.16.0+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2935,7 +2978,7 @@ Parallel execution is an incubating feature. Evaluating root project 'igv' using build file '/build/igv-2.16.0+dfsg/build.gradle'. Compiling build file '/build/igv-2.16.0+dfsg/build.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-2.36/module-metadata, path /build/igv-2.16.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@3f3006a8 +Creating new cache for metadata-2.36/module-metadata, path /build/igv-2.16.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@67687373 Loading the Maven rules... Ignoring net.sf.proguard:proguard-gradle:jar:6.1.1 Compiling build file '/build/igv-2.16.0+dfsg/build.gradle' using BuildScriptTransformer. @@ -2980,17 +3023,17 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@44b157f3 +Creating new cache for annotation-processors, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@56132b2 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@734c96d2 -Creating new cache for taskHistory, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5d419a45 -Creating new cache for outputFiles, path /build/igv-2.16.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@50953b55 -:compileJava (Thread[Task worker for ':' Thread 3,5,main]) started. +Creating new cache for resourceHashesCache, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7aad0b5 +Creating new cache for taskHistory, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@29f9d4f7 +Creating new cache for outputFiles, path /build/igv-2.16.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6adfe8d5 +:compileJava (Thread[Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.006 secs. file or directory '/build/igv-2.16.0+dfsg/lib', not found file or directory '/build/igv-2.16.0+dfsg/lib', not found -Up-to-date check for task ':compileJava' took 4.047 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 2.534 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. file or directory '/build/igv-2.16.0+dfsg/lib', not found @@ -3043,38 +3086,38 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 14 warnings -:compileJava (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 28.941 secs. -:processResources (Thread[Task worker for ':' Thread 3,5,main]) started. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 19.367 secs. +:processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.149 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.075 secs. It is not up-to-date because: No history is available. -:processResources (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 1.25 secs. -:classes (Thread[Task worker for ':' Thread 3,5,main]) started. +:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.258 secs. +:classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.001 secs. -:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) started. +:classes (Thread[Task worker for ':',5,main]) completed. Took 0.001 secs. +:debianMavenPom (Thread[Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.008 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/igv-2.16.0+dfsg/build/debian/igv.pom -:debianMavenPom (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.357 secs. -:jar (Thread[Task worker for ':' Thread 3,5,main]) started. +:debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.127 secs. +:jar (Thread[Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.111 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.041 secs. It is not up-to-date because: No history is available. -:jar (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 1.25 secs. +:jar (Thread[Task worker for ':',5,main]) completed. Took 0.694 secs. -BUILD SUCCESSFUL in 42s +BUILD SUCCESSFUL in 29s 4 actionable tasks: 4 executed jh_build -O--buildsystem=gradle dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=16 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel --max-workers=15 test openjdk version "17.0.6" 2023-01-17 OpenJDK Runtime Environment (build 17.0.6+10-Debian-1) OpenJDK 64-Bit Server VM (build 17.0.6+10-Debian-1, mixed mode, sharing) @@ -3082,17 +3125,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/igv-2.16.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 3.161 secs. -The client will now receive all logging from the daemon (pid: 3364946). The daemon log file: /build/igv-2.16.0+dfsg/.gradle/daemon/4.4.1/daemon-3364946.out.log +An attempt to start the daemon took 1.338 secs. +The client will now receive all logging from the daemon (pid: 3107529). The daemon log file: /build/igv-2.16.0+dfsg/.gradle/daemon/4.4.1/daemon-3107529.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 16 worker leases. -Creating new cache for fileHashes, path /build/igv-2.16.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@9fd4e37 -Creating new cache for resourceHashesCache, path /build/igv-2.16.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@9fd4e37 -Creating new cache for fileHashes, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@734c96d2 +Using 15 worker leases. +Creating new cache for fileHashes, path /build/igv-2.16.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@55d51e95 +Creating new cache for resourceHashesCache, path /build/igv-2.16.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@55d51e95 +Creating new cache for fileHashes, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@db55f58 Starting Build -Creating new cache for metadata-1.1/results, path /build/igv-2.16.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@4b32ebb5 +Creating new cache for metadata-1.1/results, path /build/igv-2.16.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@777063ed Settings evaluated using settings file '/build/igv-2.16.0+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/igv-2.16.0+dfsg/build.gradle'. Included projects: [root project 'igv'] @@ -3100,7 +3143,7 @@ Adding Debian repository to project 'igv' Parallel execution is an incubating feature. Evaluating root project 'igv' using build file '/build/igv-2.16.0+dfsg/build.gradle'. -Creating new cache for metadata-2.36/module-metadata, path /build/igv-2.16.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@3d94b6b1 +Creating new cache for metadata-2.36/module-metadata, path /build/igv-2.16.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@330e5c23 Loading the Maven rules... Ignoring net.sf.proguard:proguard-gradle:jar:6.1.1 Replacing com.google.code.gson:gson:jar:2.8.5 -> com.google.code.gson:gson:jar:debian @@ -3144,25 +3187,25 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@64ffb7b2 +Creating new cache for annotation-processors, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@41866689 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@734c96d2 -Creating new cache for taskHistory, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5ce0044c -Creating new cache for outputFiles, path /build/igv-2.16.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@666bca11 +Creating new cache for resourceHashesCache, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@db55f58 +Creating new cache for taskHistory, path /build/igv-2.16.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b3926c3 +Creating new cache for outputFiles, path /build/igv-2.16.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@58700f02 :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.011 secs. +Putting task artifact state for task ':compileJava' into context took 0.007 secs. file or directory '/build/igv-2.16.0+dfsg/lib', not found file or directory '/build/igv-2.16.0+dfsg/lib', not found -Skipping task ':compileJava' as it is up-to-date (took 1.659 secs). +Skipping task ':compileJava' as it is up-to-date (took 0.726 secs). :compileJava UP-TO-DATE -:compileJava (Thread[Task worker for ':',5,main]) completed. Took 1.697 secs. +:compileJava (Thread[Task worker for ':',5,main]) completed. Took 0.759 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Skipping task ':processResources' as it is up-to-date (took 0.225 secs). +Skipping task ':processResources' as it is up-to-date (took 0.1 secs). :processResources UP-TO-DATE -:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.236 secs. +:processResources (Thread[Task worker for ':',5,main]) completed. Took 0.107 secs. :classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. @@ -3177,7 +3220,7 @@ Passing through org.hamcrest:hamcrest:jar:debian file or directory '/build/igv-2.16.0+dfsg/lib', not found file or directory '/build/igv-2.16.0+dfsg/lib', not found -Up-to-date check for task ':compileTestJava' took 2.914 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 1.435 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. file or directory '/build/igv-2.16.0+dfsg/lib', not found @@ -3187,14 +3230,14 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 18.394 secs. +:compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 7.804 secs. :processTestResources (Thread[Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/igv-2.16.0+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.036 secs. +:processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.005 secs. :testClasses (Thread[Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. @@ -3203,84 +3246,29 @@ :test Putting task artifact state for task ':test' into context took 0.0 secs. file or directory '/build/igv-2.16.0+dfsg/lib', not found -Up-to-date check for task ':test' took 1.928 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 0.748 secs. It is not up-to-date because: No history is available. file or directory '/build/igv-2.16.0+dfsg/lib', not found -Starting process 'Gradle Test Executor 6'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-0.deb11.5-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath550531716484421455txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' -Starting process 'Gradle Test Executor 2'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-0.deb11.5-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath15715689343960089039txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' -Starting process 'Gradle Test Executor 1'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-0.deb11.5-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath273402804373420618txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Starting process 'Gradle Test Executor 3'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-0.deb11.5-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath2824470766180444349txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' -Starting process 'Gradle Test Executor 8'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-0.deb11.5-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath3402919121313520291txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 8' Starting process 'Gradle Test Executor 5'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-0.deb11.5-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath14515260562759752443txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=5.10.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath17474480396111247251txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 5' Starting process 'Gradle Test Executor 4'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-0.deb11.5-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath11800135651286850432txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=5.10.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath14345572371337577510txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' +Starting process 'Gradle Test Executor 6'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=5.10.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath13398727294523877570txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 6' +Starting process 'Gradle Test Executor 1'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=5.10.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath12985105406252227931txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Starting process 'Gradle Test Executor 7'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= - -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=6.1.0-0.deb11.5-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT-12:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath5239929210801473754txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 7' + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=5.10.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath12439749427762008845txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 7' +Starting process 'Gradle Test Executor 2'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=5.10.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath11428626277807065783txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 3'. Working directory: /build/igv-2.16.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Dcom.sun.xml.bind.v2.bytecode.ClassTailor.noOptimize -Ddebian.package=igv -Dfile.separator=/ -Dignore.ioexceptions=false -Dinclude.longrunning=false -Djava.awt.headless=true -Djava.class.path=/usr/share/gradle/lib/gradle-launcher-4.4.1.jar -Djava.class.version=61.0 -Djava.home=/usr/lib/jvm/java-17-openjdk-amd64 -Djava.library.path=/usr/java/packages/lib:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib -Djava.runtime.name=OpenJDK Runtime Environment -Djava.runtime.version=17.0.6+10-Debian-1 -Djava.specification.name=Java Platform API Specification -Djava.specification.vendor=Oracle Corporation -Djava.specification.version=17 -Djava.vendor=Debian -Djava.vendor.url=https://tracker.debian.org/openjdk-17 -Djava.vendor.url.bug=https://bugs.debian.org/openjdk-17 -Djava.version=17.0.6 -Djava.version.date=2023-01-17 -Djava.vm.compressedOopsMode=Zero based -Djava.vm.info=mixed mode, sharing -Djava.vm.name=OpenJDK 64-Bit Server VM -Djava.vm.specification.name=Java Virtual Machine Specification -Djava.vm.specification.vendor=Oracle Corporation -Djava.vm.specification.version=17 -Djava.vm.vendor=Debian -Djava.vm.version=17.0.6+10-Debian-1 -Djdk.debug=release -Dlibrary.jansi.path=/build/igv-2.16.0+dfsg/.gradle/native/jansi/null/linux64 -Dline.separator= + -Dmake.fail=false -Dnative.encoding=ANSI_X3.4-1968 -Dorg.gradle.appname=gradle -Dorg.gradle.jvmargs=-Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dorg.gradle.native=false -Dorg.xerial.snappy.tempdir=build/tmp -Dos.arch=amd64 -Dos.name=Linux -Dos.version=5.10.0-21-amd64 -Dpath.separator=: -Dsun.arch.data.model=64 -Dsun.boot.library.path=/usr/lib/jvm/java-17-openjdk-amd64/lib -Dsun.cpu.endian=little -Dsun.io.unicode.encoding=UnicodeLittle -Dsun.java.command=org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 -Dsun.java.launcher=SUN_STANDARD -Dsun.jnu.encoding=ANSI_X3.4-1968 -Dsun.management.compiler=HotSpot 64-Bit Tiered Compilers -Duser.dir=/build/igv-2.16.0+dfsg -Duser.home=. -Duser.name=debian -Duser.timezone=GMT+14:00 @scripts/test_suite.args @/tmp/gradle-worker-classpath3071558981205700482txt -Xmx2g -Dfile.encoding=UTF-8 -Djava.io.tmpdir=/tmp -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' Successfully started process 'Gradle Test Executor 6' +Successfully started process 'Gradle Test Executor 2' +Successfully started process 'Gradle Test Executor 3' Successfully started process 'Gradle Test Executor 7' +Successfully started process 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 4' -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports Successfully started process 'Gradle Test Executor 5' WARNING: Unknown module: org.igv specified to --add-exports WARNING: Unknown module: org.igv specified to --add-exports @@ -3298,12 +3286,6 @@ WARNING: Unknown module: org.igv specified to --add-exports WARNING: Unknown module: org.igv specified to --add-exports WARNING: Unknown module: org.igv specified to --add-exports -Successfully started process 'Gradle Test Executor 8' -Successfully started process 'Gradle Test Executor 3' -Successfully started process 'Gradle Test Executor 2' -Successfully started process 'Gradle Test Executor 1' -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports WARNING: Unknown module: org.igv specified to --add-exports WARNING: Unknown module: org.igv specified to --add-exports WARNING: Unknown module: org.igv specified to --add-exports @@ -3792,23 +3774,13 @@ WARNING: Unknown module: org.igv specified to --add-exports WARNING: Unknown module: org.igv specified to --add-exports WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -WARNING: Unknown module: org.igv specified to --add-exports -Gradle Test Executor 6 started executing tests. - +Gradle Test Executor 3 started executing tests. +Gradle Test Executor 4 started executing tests. Gradle Test Executor 5 started executing tests. +Gradle Test Executor 2 started executing tests. +Gradle Test Executor 7 started executing tests. +Gradle Test Executor 1 started executing tests. + org.broad.igv.bbfile.BBDataSourceTest > testBigInteract SKIPPED org.broad.igv.bbfile.BBDataSourceTest > testBigRmsk SKIPPED @@ -3816,198 +3788,124 @@ org.broad.igv.bbfile.BBDataSourceTest > testBigNarrowpeak SKIPPED org.broad.igv.bbfile.BBDataSourceTest > testBigGenePred SKIPPED -Gradle Test Executor 8 started executing tests. -Gradle Test Executor 4 started executing tests. -Gradle Test Executor 7 started executing tests. - -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED - -org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED -Gradle Test Executor 3 started executing tests. -Gradle Test Executor 2 started executing tests. -Gradle Test Executor 1 started executing tests. - -org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED - -org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalBaiCram SKIPPED - -org.broad.igv.sam.cram.CRAMReaderTest > testRemoteCraiCram SKIPPED - -org.broad.igv.sam.cram.CRAMReaderTest > testIterateLocalCraiCram SKIPPED -org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalCraiCram SKIPPED - -org.broad.igv.sam.cram.CRAMReaderTest > testRemoteBaiCram SKIPPED +org.broad.igv.batch.CommandExecutorTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test org.broad.igv.feature.ProbeToGeneMapTest > testAgilent SKIPPED org.broad.igv.feature.ProbeToGeneMapTest > testAffy SKIPPED -org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED - org.broad.igv.feature.ProbeToGeneMapTest > testIllumina SKIPPED -org.broad.igv.batch.CommandExecutorTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > compareSequences SKIPPED -org.broad.igv.renderer.MappedColorScaleTest > testSerialization STANDARD_ERROR - May 22, 2024 6:06:33 AM java.util.prefs.FileSystemPreferences$1 run - INFO: Created user preferences directory. +org.broad.igv.feature.genome.fasta.FastaBlockCompressedSequenceTest > findBlockContaining SKIPPED +Gradle Test Executor 6 started executing tests. org.broad.igv.batch.CommandListenerTest STANDARD_ERROR - May 22, 2024 6:06:33 AM java.util.prefs.FileSystemPreferences$1 run - WARNING: Couldn't create user preferences directory. User preferences are unusable. - -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED - -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED + Apr 21, 2023 1:47:26 AM java.util.prefs.FileSystemPreferences$1 run + INFO: Created user preferences directory. -org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED +org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED org.broad.igv.batch.CommandListenerTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED - -org.broad.igv.feature.genome.ChromosomeNameComparatorTest > testSort STANDARD_OUT - +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test org.broad.igv.htsget.HtsgetVariantSourceTest > testReadFeatures SKIPPED org.broad.igv.htsget.HtsgetVariantSourceTest > testGetHeader SKIPPED -org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [May 22,2024 06:06] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float +org.broad.igv.sam.reader.CGIAlignmentReaderTest > testURLs SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED +org.broad.igv.sam.reader.CGIAlignmentReaderTest > testURLsWithPort SKIPPED -org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [May 22,2024 06:06] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float +org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT + bam -org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED +org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED +org.broad.igv.util.blat.LegacyBlatClientTest > parseUCSCResult SKIPPED -org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED +org.broad.igv.util.blat.LegacyBlatClientTest > parseCustomResult SKIPPED +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar)Gradle Test Executor 5 finished executing tests. + +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR - SEVERE [May 22,2024 06:06] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [Apr 21,2023 01:47] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float + SEVERE [Apr 21,2023 01:47] [ExpDiffCodec] LogRatio 1.79769e+308 cannot be parsed as a float -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.feature.genome.ChromosomeNameComparatorTest > testSort STANDARD_OUT -org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED -org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED +org.broad.igv.data.cufflinks.ExpDiffCodecTest > testsamplegene_expdiff STANDARD_ERROR + SEVERE [Apr 21,2023 01:47] [ExpDiffCodec] LogRatio -1.79769e+308 cannot be parsed as a float org.broad.igv.htsget.HtsgetReaderTest > testReadHeader SKIPPED org.broad.igv.htsget.HtsgetReaderTest > testReadData SKIPPED -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release - -org.broad.igv.sam.reader.CGIAlignmentReaderTest > testURLs SKIPPED -org.broad.igv.sam.reader.CGIAlignmentReaderTest > testURLsWithPort SKIPPED -Gradle Test Executor 4 finished executing tests. - -org.broad.igv.tools.motiffinder.MotifFinderPluginHeadedTest STANDARD_OUT +org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.ui.panel.ReferenceFrameTestHeaded STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED -org.broad.igv.sam.SamIndexTest > testGetIndexedChromosomes SKIPPED +org.broad.igv.util.blat.BlatClientTest > blat SKIPPED -org.broad.igv.sam.BAMFileReaderTest > testClose SKIPPED +org.broad.igv.htsget.HtsgetBAMReaderTest > testQueryAlignments SKIPPED -org.broad.igv.sam.BAMFileReaderTest > testQueryAgainstSam SKIPPED +org.broad.igv.prefs.PreferencesManagerTest > getPreferences SKIPPED -org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.sam.SamQueryTextReaderTest > testMoran SKIPPED -org.broad.igv.tools.motiffinder.MotifFinderDialogHeadedTest STANDARD_OUT - You are trying to start a GUI in a headless environment. Aborting test +org.broad.igv.sam.SamQueryTextReaderTest > testQuery SKIPPED -org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT - dir/test.txt +org.broad.igv.sam.SamQueryTextReaderTest > testQuery2 SKIPPED -org.broad.igv.util.LittleEndianInputStreamTest > testRead SKIPPED +org.broad.igv.sam.SamQueryTextReaderTest > testQuery3 SKIPPED -org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT - IntArrayList time: 1 +org.broad.igv.sam.AsciiLineReaderTest > testSpeed SKIPPED -org.broad.igv.util.blat.LegacyBlatClientTest > fixWebBlat SKIPPED +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesCompressed SKIPPED -org.broad.igv.util.blat.LegacyBlatClientTest > parseUCSCResult SKIPPED +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegionCompressed SKIPPED -org.broad.igv.util.blat.LegacyBlatClientTest > parseCustomResult SKIPPED -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release +org.broad.igv.sam.cram.IGVReferenceSourceTest > testGetReferenceBasesByRegion SKIPPED -org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT - IntArrayList time: 551 +org.broad.igv.tdf.TDFReaderTest > testReader SKIPPED -org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED +org.broad.igv.track.TrackLoaderTestHeaded STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test -org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED -Gradle Test Executor 3 finished executing tests. -Gradle Test Executor 2 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release +org.broad.igv.sam.BAMFileReaderTest > testClose SKIPPED -org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 8 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 7 finished executing tests. +org.broad.igv.sam.BAMFileReaderTest > testQueryAgainstSam SKIPPED -org.broad.igv.util.ResourceLocatorTest > testGetFormat STANDARD_OUT - bam +org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalBaiCram SKIPPED -org.broad.igv.tools.parsers.TestBEDCodecs > testGffTags SKIPPED +org.broad.igv.sam.cram.CRAMReaderTest > testRemoteCraiCram SKIPPED -org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED +org.broad.igv.sam.cram.CRAMReaderTest > testIterateLocalCraiCram SKIPPED -org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED +org.broad.igv.sam.cram.CRAMReaderTest > testQueryLocalCraiCram SKIPPED -org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED -Gradle Test Executor 1 finished executing tests. -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -WARNING: A terminally deprecated method in java.lang.System has been called -WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) -WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker -WARNING: System::setSecurityManager will be removed in a future release -Gradle Test Executor 5 finished executing tests. +org.broad.igv.sam.cram.CRAMReaderTest > testRemoteBaiCram SKIPPED -org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT - Random sort: 647 - Random sort (reversed): 379 - Random sort (Arrays): 1651 - Sorted sort: 204 - Reverse sorted sort: 217 - Almost sorted sort: 226 +org.broad.igv.tools.motiffinder.MotifFinderPluginHeadlessTest STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test -org.broad.igv.util.blat.BlatClientTest > blat SKIPPED +org.broad.igv.ui.panel.ReferenceFrameTestHeaded STANDARD_OUT + You are trying to start a GUI in a headless environment. Aborting test org.broad.igv.util.blat.BlatClientTest > blatTooShort STANDARD_ERROR - SEVERE [May 22,2024 06:06] [OAuthUtils] Error fetching oAuth properties - SEVERE [May 22,2024 06:06] [OAuthUtils] java.net.UnknownHostException: s3.amazonaws.com + SEVERE [Apr 21,2023 01:47] [OAuthUtils] Error fetching oAuth properties + SEVERE [Apr 21,2023 01:47] [OAuthUtils] java.net.UnknownHostException: s3.amazonaws.com at java.base/sun.nio.ch.NioSocketImpl.connect(NioSocketImpl.java:567) at java.base/java.net.SocksSocketImpl.connect(SocksSocketImpl.java:327) at java.base/java.net.Socket.connect(Socket.java:633) @@ -4086,17 +3984,79 @@ at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:833) +Gradle Test Executor 3 finished executing tests. +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release + +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort: 399 +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release +Gradle Test Executor 7 finished executing tests. + +org.broad.igv.util.collections.IntArrayListTest > test STANDARD_OUT + IntArrayList time: 199 + +org.broad.igv.AbstractHeadlessTest > initializationError SKIPPED WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release +Gradle Test Executor 1 finished executing tests. + +org.broad.igv.tools.parsers.TestBEDCodecs > testGffTags SKIPPED + +org.broad.igv.tools.parsers.TestBEDCodecs > testLength1Feature SKIPPED + +org.broad.igv.util.ArrayMemoryTest > compareMemory SKIPPED + +org.broad.igv.util.collections.DoubleArrayListTest > test STANDARD_OUT + IntArrayList time: 4 + +org.broad.igv.util.IGVHttpClientUtilsTest > testExists SKIPPED + +org.broad.igv.util.IGVHttpClientUtilsTest > testGetContentLength SKIPPED Gradle Test Executor 6 finished executing tests. -Finished generating test XML results (0.065 secs) into: /build/igv-2.16.0+dfsg/build/test-results/test +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release + +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort (reversed): 349 + +org.broad.igv.util.FileUtilsTest > testFindRelativeHttpPath STANDARD_OUT + dir/test.txt + +org.broad.tribble.TribbleFeatureReaderTest > testQuery SKIPPED + +org.broad.tribble.TribbleFeatureReaderTest > testGetSequenceNames SKIPPED +Gradle Test Executor 4 finished executing tests. +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release + +org.broad.igv.util.HeapSortTest > tesArraySort STANDARD_OUT + Random sort (Arrays): 1245 + Sorted sort: 166 + Reverse sorted sort: 164 + Almost sorted sort: 171 +Gradle Test Executor 2 finished executing tests. +WARNING: A terminally deprecated method in java.lang.System has been called +WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) +WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker +WARNING: System::setSecurityManager will be removed in a future release +Finished generating test XML results (0.036 secs) into: /build/igv-2.16.0+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.328 secs) into: /build/igv-2.16.0+dfsg/build/reports/tests/test -:test (Thread[Task worker for ':',5,main]) completed. Took 15.924 secs. +Finished generating test html results (0.127 secs) into: /build/igv-2.16.0+dfsg/build/reports/tests/test +:test (Thread[Task worker for ':',5,main]) completed. Took 6.853 secs. -BUILD SUCCESSFUL in 52s +BUILD SUCCESSFUL in 22s 4 actionable tasks: 2 executed, 2 up-to-date create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=gradle @@ -4138,12 +4098,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3081976/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3081976/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3279105 and its subdirectories -I: Current time: Wed May 22 06:07:24 -12 2024 -I: pbuilder-time-stamp: 1716401244 +I: removing directory /srv/workspace/pbuilder/3081976 and its subdirectories +I: Current time: Fri Apr 21 01:47:48 +14 2023 +I: pbuilder-time-stamp: 1681991268